BAC Information

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BAC

Clone NameB6Ng01-200F08
Chromosome6 (Build37)
Map Location 9,506,053 - 9,507,095
singlet/doubletsinglet
Overlap genenone
Upstream geneGlcci1, Ica1, LOC100040238, Nxph1
Downstream geneLOC330264
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-200F08.bB6Ng01-200F08.g
ACCGA021424GA021425
length1,0561,003
definitionB6Ng01-200F08.b B6Ng01-200F08.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttctgcaagtagttcttggtcatttaactcttaatgtgctcca
ttctggagaacaatctcaacctctagtccaaacaatattactgcttttag
gtatctgttttgtaagaaccaattttatcatgtcacagtactattttgtg
caaatgatattttgcttgtaaatgacaagcagtaacattatggtgttttt
aatgctattcagattgtgaaaaaccagtaacatcatagagctactctgct
attgaaatactaaaataaatatttttattgaaatgctttagatgtttggg
gagttatataccgaaataaaatagaaatgagatacttattctgagataaa
ttcaacaggggatctcagagctacttcctacataatcagagtgtggggaa
tgaggggtcctatgatagaatttacagcaaggttttaccttgaatggcta
taataaagaaagtgtgcaagcttaaccttttatcacttacaaaatgatac
ttgagtctacttggactgcttgcatataattcagcctctctaattagaca
tgtgacctgatcaaatcccagatatttttaacagtggaaagaattttcca
ttttaatatgctgccaagggagtataagtgcaaaaatgaatataggttta
gttcattgtgtttgtgtaatgaatggtggttgcaattttctattgtaaca
atagaagagggaaaagaaatccagagaaaaatgacagcatatagagttta
agccaggatatatctctagatgtttatatttgcagaaggtggctttttaa
tcttttgaaagaagcatggttcaaatatgtcatctttttgtctagtcaat
aagggtaggtggttagtgctgtgctattataatgcaggccaatgcaaaaa
tatcagtaagatattactataagttataataaccatcgtactaagtatga
ctcctggtggtagtgtagggagcaacagtaaatgcaagcttgctgggcca
tttattttggtctatacaaaaactctaaggaagatgcctacttctatgtt
atggcc

gaattcacaacagaggaatctcgaacagctgagaagcacttaaagaaatg
tgcaatgttcttcaatgtcttaaagtgataaattttgggcaaggttccat
aagctactgaaaataaggtgtattatttgtgtttgggtggaacaatctgt
agatttctgtttgatccacttgatttaaggcattctttacagaatttctt
tgtttagatattgtctgaatgaccggtttattggtgagactagggtattg
aaatctcccattaagtctaatttagggtgaatatgtaattttagctgaag
taatgtttgtttgtttgttgtagttgttttatgaacttcataactgttta
gagttgtaatataagttttatagattaatgagtatgtagtattcttccct
cttagttttgtttgaagtctattttgtcaaatattaaaatagctacgcct
acttgattcttggttacattaacttggaataacattttttatcctttttc
cctaaagtgaagtctatccttgttggtgaggtatgtgtatgatatggagc
aaaaagaaagatcctgttttcttacataatttattaatgtgtatttagag
atgaattgagaccatcaatactgagagttattaatgatcagtgttaattg
agtactgttttattgttgtgtgtaaattttcccctctattgaaaaattgt
cttcgaattatttattccttgttcctcttgaatgtaggtagccccgtttt
tggactgaaaatttcctcccagagtcttacttagagctgtgctttggtag
ggagaaacggatttcattttggtgtaatgtatggatttttcctctctacc
tattgaattgatagttttgctaagaagttgggctggcatctttggccctc
aggtttcttagatctcagggttccaggcataatggctttcaaattccaat
gataaaagtgaggttttgtgctagaaaggcataagatggatatggttacc
tgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_9506053_9507095
seq2: B6Ng01-200F08.b_47_1102

seq1  GAATTCTTTCTGCAAGTAGTTCTTGGTCATTTAACTCTTAATGTGCTCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTGCAAGTAGTTCTTGGTCATTTAACTCTTAATGTGCTCCA  50

seq1  TTCTGGAGAACAATCTCAACCTCTAGTCCAAACAATATTACTGCTTTTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGAGAACAATCTCAACCTCTAGTCCAAACAATATTACTGCTTTTAG  100

seq1  GTATCTGTTTTGTAAGAACCAATTTTATCATGTCACAGTACTATTTTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTGTTTTGTAAGAACCAATTTTATCATGTCACAGTACTATTTTGTG  150

seq1  CAAATGATATTTTGCTTGTAAATGACAAGCAGTAACATTATGGTGTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGATATTTTGCTTGTAAATGACAAGCAGTAACATTATGGTGTTTTT  200

seq1  AATGCTATTCAGATTGTGAAAAACCAGTAACATCATAGAGCTACTCTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTATTCAGATTGTGAAAAACCAGTAACATCATAGAGCTACTCTGCT  250

seq1  ATTGAAATACTAAAATAAATATTTTTATTGAAATGCTTTAGATGTTTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAATACTAAAATAAATATTTTTATTGAAATGCTTTAGATGTTTGGG  300

seq1  GAGTTATATACCGAAATAAAATAGAAATGAGATACTTATTCTGAGATAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTATATACCGAAATAAAATAGAAATGAGATACTTATTCTGAGATAAA  350

seq1  TTCAACAGGGGATCTCAGAGCTACTTCCTACATAATCAGAGTGTGGGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACAGGGGATCTCAGAGCTACTTCCTACATAATCAGAGTGTGGGGAA  400

seq1  TGAGGGGTCCTATGATAGAATTTACAGCAAGGTTTTACCTTGAATGGCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGGTCCTATGATAGAATTTACAGCAAGGTTTTACCTTGAATGGCTA  450

seq1  TAATAAAGAAAGTGTGCAAGCTTAACCTTTTATCACTTACAAAATGATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAAGAAAGTGTGCAAGCTTAACCTTTTATCACTTACAAAATGATAC  500

seq1  TTGAGTCTACTTGGACTGCTTGCATATAATTCAGCCTCTCTAATTAGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTCTACTTGGACTGCTTGCATATAATTCAGCCTCTCTAATTAGACA  550

seq1  TGTGACCTGATCAAATCCCAGATATTTTTAACAGTGGAAAGAATTTTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACCTGATCAAATCCCAGATATTTTTAACAGTGGAAAGAATTTTCCA  600

seq1  TTTTAATATGCTGCCAAGGGAGTATAAGTGCAAAAATGAATATAGGTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATATGCTGCCAAGGGAGTATAAGTGCAAAAATGAATATAGGTTTA  650

seq1  GTTCATTGTGTTTGTGTAATGAATGGTGGTTGCAATTTTCTATTGTAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATTGTGTTTGTGTAATGAATGGTGGTTGCAATTTTCTATTGTAACA  700

seq1  ATAGAAGAGGGAAAAGAAATCCAGAGAAAAATGACAGCATATAGAG-TTA  749
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ATAGAAGAGGGAAAAGAAATCCAGAGAAAAATGACAGCATATAGAGTTTA  750

seq1  AGCCAGGATATATCTCTAGATG-TTATATTTGCAGAAGGTGGCTTTTTAA  798
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AGCCAGGATATATCTCTAGATGTTTATATTTGCAGAAGGTGGCTTTTTAA  800

seq1  TC-TTTGAAAGAAGCATGGTTCAAATATGTCATCTTTTTGTCTAGTCAAT  847
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGAAAGAAGCATGGTTCAAATATGTCATCTTTTTGTCTAGTCAAT  850

seq1  AAGGGTAGGTGGTTAGTGCTGTGCTATTATAATGCA-GCCAATGCAAAAT  896
      |||||||||||||||||||||||||||||||||||| |||||||||||| 
seq2  AAGGGTAGGTGGTTAGTGCTGTGCTATTATAATGCAGGCCAATGCAAAAA  900

seq1  TATCAGTAAGATATTACTAATAAGTTATAATAACCATCGTACTAAGTATG  946
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TATCAGTAAGATATTACT-ATAAGTTATAATAACCATCGTACTAAGTATG  949

seq1  ACTCCT-GTTGTAGTGTA-GGAGCAACAG-AAATGCAAGCTTGCT-GGCC  992
      |||||| || |||||||| |||||||||| ||||||||||||||| ||||
seq2  ACTCCTGGTGGTAGTGTAGGGAGCAACAGTAAATGCAAGCTTGCTGGGCC  999

seq1  ATTTATTTT-GTCTATTACAAAACTCTAAG--AGATG-CTAC-TCTATG-  1036
      ||||||||| ||||||   |||||||||||  ||||| |||| |||||| 
seq2  ATTTATTTTGGTCTATACAAAAACTCTAAGGAAGATGCCTACTTCTATGT  1049

seq1  TATGGCC  1043
      |||||||
seq2  TATGGCC  1056


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