BAC Information

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BAC

Clone NameB6Ng01-200J13
Chromosome6 (Build37)
Map Location 4,297,619 - 4,434,196
singlet/doubletdoublet
Overlap geneLOC667381, LOC100039965
Upstream geneSamd9l, AI987662, Ccdc132, Calcr, LOC100039942, Tfpi2, Gngt1, Gng11, 4930528H21Rik, Bet1
Downstream geneCol1a2, Casd1, Sgce, Peg10, LOC100040018, Ppp1r9a, Pon1, Pon3, Pon2, Asb4, Pdk4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-200J13.bB6Ng01-200J13.g
ACCGA021612GA021613
length348981
definitionB6Ng01-200J13.b B6Ng01-200J13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,297,619 - 4,297,966)(4,433,108 - 4,434,196)
sequence
actgattaaagtggctgtgctgttttcaataaggagcaatgtttatctac
ccacctggacctccatttcatattaaaagcttcataggtaatatttccta
caaatatatccatttgacttggtttgaattttatacaaaaatgttaatga
tcttacttttgtctctcatctttgagttgctaagttttgtcataaattta
tttgtattactttgttttttttaaatgactaaatttttttgttgatactg
ctgattacaactgttttctcctttattaacttattttgctaagtacctgt
tttttaacctttcttggatttatgtgtgtgtgtgtgtgtgtgtgtgtg
gaattccatttctcctccaaattgtctgcagcgtcgtttgctaagcattg
tgggactccggtcttaactgattgcaaatgtctctgaggtaaagttttcc
atgggagtcaccagctggatttggccagtgttcattctctcttgaggtaa
aatttgccaaaaggggacgggtaataatgagattcccaccctcaagtcct
gacgtggccataagaagaagctgtcaactggggtttgttttccatgcaac
agaagtgcagagcacttacagagaccaggtaaagtcattaaaaaaaaagt
aactggactcttacttctgctcagccagaggacttccagtggtttgtgag
tacagcccccaaaaaaagaggagcagtttccagaaaaaacaccttaagcc
gccaagccaagcaatcttcttaaagtgggtaaaagcagggctggcagggt
gcagcttggaagccagaaaccttccttgtttcctttgcctgctctcgtgg
acccgaatcctggattttaataaggcagcaaaattgaattgccaggaaga
acggagctgtcacctgctgtgtatcttcattaagaattgaaattcttcaa
aataagctttcccaccaggattaaaagacagaaaatctattgtcacaatt
tctggatgtttgttcttgtatttcccaagggtcagaagtcgtcattaaaa
cacatagttctcttcaaattggacttccttgaaaagagtgttattagttc
ttttttttttcctttaaaggaatcataagtagagggaagacagggttggc
ctttccaaagcaaaactgtaagttagtaggtactcagtaccttttgcctg
agatattcatgtctgttgacttctaaagcaaaggtcagagcgacttttct
gagttattctgggcgaagtttcttctgttgctctccaaataatgtcagca
aggctacttattcccgtagctcagcccttca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_4297619_4297966
seq2: B6Ng01-200J13.b_54_401

seq1  ACTGATTAAAGTGGCTGTGCTGTTTTCAATAAGGAGCAATGTTTATCTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATTAAAGTGGCTGTGCTGTTTTCAATAAGGAGCAATGTTTATCTAC  50

seq1  CCACCTGGACCTCCATTTCATATTAAAAGCTTCATAGGTAATATTTCCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTGGACCTCCATTTCATATTAAAAGCTTCATAGGTAATATTTCCTA  100

seq1  CAAATATATCCATTTGACTTGGTTTGAATTTTATACAAAAATGTTAATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATATCCATTTGACTTGGTTTGAATTTTATACAAAAATGTTAATGA  150

seq1  TCTTACTTTTGTCTCTCATCTTTGAGTTGCTAAGTTTTGTCATAAATTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACTTTTGTCTCTCATCTTTGAGTTGCTAAGTTTTGTCATAAATTTA  200

seq1  TTTGTATTACTTTGTTTTTTTTAAATGACTAAATTTTTTTGTTGATACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATTACTTTGTTTTTTTTAAATGACTAAATTTTTTTGTTGATACTG  250

seq1  CTGATTACAACTGTTTTCTCCTTTATTAACTTATTTTGCTAAGTACCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTACAACTGTTTTCTCCTTTATTAACTTATTTTGCTAAGTACCTGT  300

seq1  TTTTTAACCTTTCTTGGATTTATGTGTGTGTGTGTGTGTGTGTGTGTG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAACCTTTCTTGGATTTATGTGTGTGTGTGTGTGTGTGTGTGTG  348

seq1: chr6_4433108_4434196
seq2: B6Ng01-200J13.g_71_1051 (reverse)

seq1  TGAAGCAGGAGCATCACAAGTTCAAAGCAGGCTCAGGTCACGAAGTAAGT  50
                                                        
seq2  --------------------------------------------------  0

seq1  TCAAGACCAGCCTGGACAACTTAGTGAGACACTGATTTATAAACATTCAG  100
                                                        
seq2  --------------------------------------------------  0

seq1  TATCTATGCTATGCTGAA-GGCTGAGCTACGGGA--TAGTAGCCTTGCTG  147
                    |||| |||||||||||||||   |||||||||||||
seq2  --------------TGAAGGGCTGAGCTACGGGAATAAGTAGCCTTGCTG  36

seq1  ACATTATCTGGAGAGCAAACAGAAGAAACTTCG-CCAGAATAACTCAG-A  195
      ||||||| |||||||| |||||||||||||||| |||||||||||||| |
seq2  ACATTATTTGGAGAGC-AACAGAAGAAACTTCGCCCAGAATAACTCAGAA  85

seq1  AAGTCGCTCTGACCTTTGC-TTAGAAGTCAACAGACATGAATATCTCAGG  244
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AAGTCGCTCTGACCTTTGCTTTAGAAGTCAACAGACATGAATATCTCAGG  135

seq1  C-AAAGGTACTGAGTACCTACTAACTTACAGTTTTGCTTTGGAAAGGCCA  293
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGGTACTGAGTACCTACTAACTTACAGTTTTGCTTTGGAAAGGCCA  185

seq1  ACCCTGTCTTCCCTCTACTTATGATTCCTTTAAAGGAAAAAAAAAAGAAC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGTCTTCCCTCTACTTATGATTCCTTTAAAGGAAAAAAAAAAGAAC  235

seq1  TAATAACACTCTTTTCAAGGAAGTCCAATTTGAAGAGAACTATGTGTTTT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAACACTCTTTTCAAGGAAGTCCAATTTGAAGAGAACTATGTGTTTT  285

seq1  AATGACGACTTCTGACCCTTGGGAAATACAAGAACAAACATCCAGAAATT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACGACTTCTGACCCTTGGGAAATACAAGAACAAACATCCAGAAATT  335

seq1  GTGACAATAGATTTTCTGTCTTTTAATCCTGGTGGGAAAGCTTATTTTGA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAATAGATTTTCTGTCTTTTAATCCTGGTGGGAAAGCTTATTTTGA  385

seq1  AGAATTTCAATTCTTAATGAAGATACACAGCAGGTGACAGCTCCGTTCTT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTTCAATTCTTAATGAAGATACACAGCAGGTGACAGCTCCGTTCTT  435

seq1  CCTGGCAATTCAATTTTGCTGCCTTATTAAAATCCAGGATTCGGGTCCAC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCAATTCAATTTTGCTGCCTTATTAAAATCCAGGATTCGGGTCCAC  485

seq1  GAGAGCAGGCAAAGGAAACAAGGAAGGTTTCTGGCTTCCAAGCTGCACCC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCAGGCAAAGGAAACAAGGAAGGTTTCTGGCTTCCAAGCTGCACCC  535

seq1  TGCCAGCCCTGCTTTTACCCACTTTAAGAAGATTGCTTGGCTTGGCGGCT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGCCCTGCTTTTACCCACTTTAAGAAGATTGCTTGGCTTGGCGGCT  585

seq1  TAAGGTGTTTTTTCTGGAAACTGCTCCTCTTTTTTTGGGGGCTGTACTCA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTGTTTTTTCTGGAAACTGCTCCTCTTTTTTTGGGGGCTGTACTCA  635

seq1  CAAACCACTGGAAGTCCTCTGGCTGAGCAGAAGTAAGAGTCCAGTTACTT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCACTGGAAGTCCTCTGGCTGAGCAGAAGTAAGAGTCCAGTTACTT  685

seq1  TTTTTTTAATGACTTTACCTGGTCTCTGTAAGTGCTCTGCACTTCTGTTG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTAATGACTTTACCTGGTCTCTGTAAGTGCTCTGCACTTCTGTTG  735

seq1  CATGGAAAACAAACCCCAGTTGACAGCTTCTTCTTATGGCCACGTCAGGA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAAAACAAACCCCAGTTGACAGCTTCTTCTTATGGCCACGTCAGGA  785

seq1  CTTGAGGGTGGGAATCTCATTATTACCCGTCCCCTTTTGGCAAATTTTAC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGGGTGGGAATCTCATTATTACCCGTCCCCTTTTGGCAAATTTTAC  835

seq1  CTCAAGAGAGAATGAACACTGGCCAAATCCAGCTGGTGACTCCCATGGAA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGAGAGAATGAACACTGGCCAAATCCAGCTGGTGACTCCCATGGAA  885

seq1  AACTTTACCTCAGAGACATTTGCAATCAGTTAAGACCGGAGTCCCACAAT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTACCTCAGAGACATTTGCAATCAGTTAAGACCGGAGTCCCACAAT  935

seq1  GCTTAGCAAACGACGCTGCAGACAATTTGGAGGAGAAATGGAATTC  1089
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGCAAACGACGCTGCAGACAATTTGGAGGAGAAATGGAATTC  981