BAC Information

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BAC

Clone NameB6Ng01-201D08
Chromosome6 (Build37)
Map Location 104,698,597 - 104,825,708
singlet/doubletdoublet
Overlap geneCntn6
Upstream geneLOC100043345
Downstream geneLOC384470, LOC100043716, LOC100043350, Cntn4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-201D08.bB6Ng01-201D08.g
ACCGA022049GA022050
length1,099911
definitionB6Ng01-201D08.b B6Ng01-201D08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,698,597 - 104,699,683)(104,824,799 - 104,825,708)
sequence
gaattctagaaactctttattttttcatttctgccttgatccatttttta
tgcagtagagattccttcagtttccatgggcttgtaaatgttctattgtt
tctgttgttgatattcagttttaatctgtagtgttctgaccgattaaagg
aaattattttcttgagaaatcacattttcaattttctggagaaaagacat
tgtcttaacttaacagtgtctttccttgaactctatgtttctgcatagtg
gagaattttggatttttttcctagttgttattgttacttggttctttcgg
ttgtttgtttaattttttaaaggagcatgcttttagttaaatgtgaaatc
tcttcaacacaatcaagattacatagatttgcaaagtttgccttctagat
gtcttacagtttgtgctttacacgttggtttatgatttgttttgcattaa
attatttgaaaaccgtttatttttattttttaaatcatttattacctatg
agcagaaaattattctgacatctattgaaagctggtgaattctacactgc
atacctttcagttcttggcaaagatatgtgaaacgagtattttttttctg
aaattataacttttccatttttctgttcctcttccttttcctcctcttcc
ccaacccttctgctcctctgacatctccttctctgccaccatctcttact
ttacttcttctaatggaatgatctggccattatgactgtggttaatgctc
tgtcagaaaatttcagtgttcctggttattccaaatattctgcttatttt
gataatttaatggcaattcatttttttctataatttctgcataaactttt
ggaatatttatctatttccacgaatttgatagtttgtggaactcctgatc
atcttgaaaaaacttcacatattaaaatattaatgttctaatagatatgt
aataaaattggttcttccatttaattggagcttctcttaaatgttttcca
agaatgttgatttttgcccttcaatataacatgtaatgtaatatatgcat
ataagtgggcgttaaatataaagtgtttacatcgaatatatgtggtgtg

gaattcatgtttggacgcacaggaaaacatgaggaaatatctgatatact
ttacacaaaggaaaaatataaacttacagttttatgactgttttcaacaa
catggctatagaacaatttttagtccagatatggtgacaaatacagaaga
caattaacttaaagggggaaagtttattttagcttaccatttcaaaactt
tcagtccttgctcgattgctctgttgagcaatacaccattgaggaagtgt
gaccagaaactcctcagatcatgacctctaagaagggcaaagggaaagag
tcagagaagtgatgtctgcttcaaggtaggctctcagtgttccaagttct
tttcagtaggcttcactccttgtaggttccaccatctctcaacatcacca
tcattagattcagcctacaacacatgtgccaacacagcatcttaagtgca
gattagcaaaattgttttatgtgaagctacaaatcatggtttttccacct
gttaattagcctggcccaagtataccaataaaaaatctttttgatgatat
tcttacttatcttttcttactctaacatttacttttcaagtaagagtgtc
ataaaaacctactcaaacatgcaaaataataacctttctcattatctatc
ttcttacagtccttgcatatacctcaaagtacactgtgttcacagcctgt
tagtcgtggctgaagaatctataatccacaattaattcaacagtgtatgc
tggaagcaaaaaataataatcataataataataaaaattaaaaaaacgta
tagtagaaaggtaaggtatcaaaaaggccatgataaatatgtttcaagat
tcacaatggacagagagaaatatatcttactttgaaggggtaaggggtat
ggggaggaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_104698597_104699683
seq2: B6Ng01-201D08.b_44_1142

seq1  GAATTCTAGAAACTCTTTATTTTTTCATTTCTGCCTTGATCCATTTTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGAAACTCTTTATTTTTTCATTTCTGCCTTGATCCATTTTTTA  50

seq1  TGCAGTAGAGATTCCTTCAGTTTCCATGGGCTTGTAAATGTTCTATTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTAGAGATTCCTTCAGTTTCCATGGGCTTGTAAATGTTCTATTGTT  100

seq1  TCTGTTGTTGATATTCAGTTTTAATCTGTAGTGTTCTGACCGATTAAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTGTTGATATTCAGTTTTAATCTGTAGTGTTCTGACCGATTAAAGG  150

seq1  AAATTATTTTCTTGAGAAATCACATTTTCAATTTTCTGGAGAAAAGACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATTTTCTTGAGAAATCACATTTTCAATTTTCTGGAGAAAAGACAT  200

seq1  TGTCTTAACTTAACAGTGTCTTTCCTTGAACTCTATGTTTCTGCATAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTAACTTAACAGTGTCTTTCCTTGAACTCTATGTTTCTGCATAGTG  250

seq1  GAGAATTTTGGATTTTTTTCCTAGTTGTTATTGTTACTTGGTTCTTTCGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATTTTGGATTTTTTTCCTAGTTGTTATTGTTACTTGGTTCTTTCGG  300

seq1  TTGTTTGTTTAATTTTTTAAAGGAGCATGCTTTTAGTTAAATGTGAAATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTTTAATTTTTTAAAGGAGCATGCTTTTAGTTAAATGTGAAATC  350

seq1  TCTTCAACACAATCAAGATTACATAGATTTGCAAAGTTTGCCTTCTAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAACACAATCAAGATTACATAGATTTGCAAAGTTTGCCTTCTAGAT  400

seq1  GTCTTACAGTTTGTGCTTTACACGTTGGTTTATGATTTGTTTTGCATTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTACAGTTTGTGCTTTACACGTTGGTTTATGATTTGTTTTGCATTAA  450

seq1  ATTATTTGAAAACCGTTTATTTTTATTTTTTAAATCATTTATTACCTATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTGAAAACCGTTTATTTTTATTTTTTAAATCATTTATTACCTATG  500

seq1  AGCAGAAAATTATTCTGACATCTATTGAAAGCTGGTGAATTCTACACTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAAAATTATTCTGACATCTATTGAAAGCTGGTGAATTCTACACTGC  550

seq1  ATACCTTTCAGTTCTTGGCAAAGATATGTGAAACGAGTATTTTTTTTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTTTCAGTTCTTGGCAAAGATATGTGAAACGAGTATTTTTTTTCTG  600

seq1  AAATTATAACTTTTCCATTTTTCTGTTCCTCTTCCTTTTCCTCCTCTTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATAACTTTTCCATTTTTCTGTTCCTCTTCCTTTTCCTCCTCTTCC  650

seq1  CCAACCCTTCTGCTCCTCTGACATCTCCTTCTCTGCCACCATCTCTTACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCCTTCTGCTCCTCTGACATCTCCTTCTCTGCCACCATCTCTTACT  700

seq1  TTACTTCTTCTAATGGAATGATCTGGCCATTATGACTGTGGTTAATGCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTCTTCTAATGGAATGATCTGGCCATTATGACTGTGGTTAATGCTC  750

seq1  TGTCAGAAAATTTCAGTGTTCCTGGTTATTCCAAATATTCTGCTTATTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGAAAATTTCAGTGTTCCTGGTTATTCCAAATATTCTGCTTATTTT  800

seq1  GATAATTTAATGGCAATTCATTTTTTTCTATAATTTCTGCATAAACTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATTTAATGGCAATTCATTTTTTTCTATAATTTCTGCATAAACTTTT  850

seq1  -GAATATTTATCTATTTCCACGAAATTTGATAG-TTGTGGAACTCCTGAT  898
       ||||||||||||||||||||| |||||||||| ||||||||||||||||
seq2  GGAATATTTATCTATTTCCACG-AATTTGATAGTTTGTGGAACTCCTGAT  899

seq1  CATCTTGAAAAAACCTCACATATTAAAATATTAATGTTCTAATAGATATG  948
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CATCTTGAAAAAACTTCACATATTAAAATATTAATGTTCTAATAGATATG  949

seq1  T-ATAAAATT-GTTC-TCCATTTAATTGGAGCTTCTCT--AATTGTTTCC  993
      | |||||||| |||| ||||||||||||||||||||||  |||  |||||
seq2  TAATAAAATTGGTTCTTCCATTTAATTGGAGCTTCTCTTAAATGTTTTCC  999

seq1  AAGAATGTTGATTTTTG-CCTTC-ATAT-ACATGT-ATGT-ATATATGCA  1038
      ||||||||||||||||| ||||| |||| |||||| |||| |||||||||
seq2  AAGAATGTTGATTTTTGCCCTTCAATATAACATGTAATGTAATATATGCA  1049

seq1  TATAAGTGTGCGTT-AATATAAAGTGTTTACATCG-ATATATGTGTGTGT  1086
      |||||||| ||||| |||||||||||||||||||| ||||||||| ||||
seq2  TATAAGTGGGCGTTAAATATAAAGTGTTTACATCGAATATATGTG-GTGT  1098

seq1  G  1087
      |
seq2  G  1099


seq1: chr6_104824799_104825708
seq2: B6Ng01-201D08.g_70_980 (reverse)

seq1  CCCTCCT-CCCATACCCCTTACCCCTTCAAAGTAAGATATATTTCTCTCT  49
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCTCCCCATACCCCTTACCCCTTCAAAGTAAGATATATTTCTCTCT  50

seq1  GTCCATTGTGAATCTTGAAACATATTTATCATGGCCTTTTTGATACCTTA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATTGTGAATCTTGAAACATATTTATCATGGCCTTTTTGATACCTTA  100

seq1  CCTTTCTACTATACGTTTTTTTAATTTTTATTATTATTATGATTATTATT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTACTATACGTTTTTTTAATTTTTATTATTATTATGATTATTATT  150

seq1  TTTTGCTTCCAGCATACACTGTTGAATTAATTGTGGATTATAGATTCTTC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTTCCAGCATACACTGTTGAATTAATTGTGGATTATAGATTCTTC  200

seq1  AGCCACGACTAACAGGCTGTGAACACAGTGTACTTTGAGGTATATGCAAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACGACTAACAGGCTGTGAACACAGTGTACTTTGAGGTATATGCAAG  250

seq1  GACTGTAAGAAGATAGATAATGAGAAAGGTTATTATTTTGCATGTTTGAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTAAGAAGATAGATAATGAGAAAGGTTATTATTTTGCATGTTTGAG  300

seq1  TAGGTTTTTATGACACTCTTACTTGAAAAGTAAATGTTAGAGTAAGAAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTTTTATGACACTCTTACTTGAAAAGTAAATGTTAGAGTAAGAAAA  350

seq1  GATAAGTAAGAATATCATCAAAAAGATTTTTTATTGGTATACTTGGGCCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGTAAGAATATCATCAAAAAGATTTTTTATTGGTATACTTGGGCCA  400

seq1  GGCTAATTAACAGGTGGAAAAACCATGATTTGTAGCTTCACATAAAACAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAATTAACAGGTGGAAAAACCATGATTTGTAGCTTCACATAAAACAA  450

seq1  TTTTGCTAATCTGCACTTAAGATGCTGTGTTGGCACATGTGTTGTAGGCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTAATCTGCACTTAAGATGCTGTGTTGGCACATGTGTTGTAGGCT  500

seq1  GAATCTAATGATGGTGATGTTGAGAGATGGTGGAACCTACAAGGAGTGAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTAATGATGGTGATGTTGAGAGATGGTGGAACCTACAAGGAGTGAA  550

seq1  GCCTACTGAAAAGAACTTGGAACACTGAGAGCCTACCTTGAAGCAGACAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTACTGAAAAGAACTTGGAACACTGAGAGCCTACCTTGAAGCAGACAT  600

seq1  CACTTCTCTGACTCTTTCCCTTTGCCCTTCTTAGAGGTCATGATCTGAGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCTCTGACTCTTTCCCTTTGCCCTTCTTAGAGGTCATGATCTGAGG  650

seq1  AGTTTCTGGTCACACTTCCTCAATGGTGTATTGCTCAACAGAGCAATCGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTGGTCACACTTCCTCAATGGTGTATTGCTCAACAGAGCAATCGA  700

seq1  GCAAGGACTGAAAGTTTTGAAATGGTAAGCTAAAATAAACTTTCCCCCTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGACTGAAAGTTTTGAAATGGTAAGCTAAAATAAACTTTCCCCCTT  750

seq1  TAAGTTAATTGTCTTCTGTATTTGTCACCATATCTGGACTAAAAATTGTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTAATTGTCTTCTGTATTTGTCACCATATCTGGACTAAAAATTGTT  800

seq1  CTATAGCCATGTTGTTGAAAACAGTCATAAAACTGTAAGTTTATATTTTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGCCATGTTGTTGAAAACAGTCATAAAACTGTAAGTTTATATTTTT  850

seq1  CCTTTGTGTAAAGTATATCAGATATTTCCTCATGTTTTCCTGTGCGTCCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGTGTAAAGTATATCAGATATTTCCTCATGTTTTCCTGTGCGTCCA  900

seq1  AACATGAATTC  910
      |||||||||||
seq2  AACATGAATTC  911


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