BAC Information

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BAC

Clone NameB6Ng01-201E03
Chromosome6 (Build37)
Map Location 33,586,237 - 33,587,424
singlet/doubletsinglet
Overlap geneExoc4
Upstream geneChchd3, LOC100039118, Gm1401
Downstream geneLrguk, Slc35b4, Akr1b3, Akr1b8, LOC664942, 2310005E10Rik, Akr1b7, Bpgm
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-201E03.bB6Ng01-201E03.g
ACCGA022085GA022086
length1,1781,182
definitionB6Ng01-201E03.b B6Ng01-201E03.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaactcctaagagcttgagatgggaaaatgatgagtcagcaccct
cagagtctactctttccctaaaaataaagggctaggaactatgcacagca
gcaaagcacttggccagcaggcatacgacccttgaatctgttgtagcact
atgggaaatgatatgaaaagcactggtcctgtaagtgttccctttgcaaa
tatggttgggtcagaggtggacagtctagttgtgataaaaaggaaaccac
gcttttttgggagaaaggggaagatacaatatcaaaatattctgattatt
taaaaaaatcagttattttccacttgtggaacatttataatggatgtttg
aatacatctagaatcaaatgcaaagcctgagaatgactctgggagcacca
cctttatttattattattgttattgatattattttattaatcattttgtt
tacatttcaaatgatatccccctccctgtggttacccctccagcaacctc
ccccatgtcgtcccccccagtccctctcctttttccctaggagggtgctc
ctctgaaaatagaactgagactgaaggaaaggccattcacagtgccacct
ttaattttgtgcttccacaggtccaggtgaggtggctacttacattccta
caagttcacaggaggctggtccaaggtcacactctacactccctggcaag
cagtgtctctgcagcctggaaagtctgcacacacttggcattttcactga
gcctagatcaaagacaaccttctcctaagcctttctaactcatttcggtt
tacagaaaacccctcttttatctttctctataaaggaacagaatggactt
gacctacagtaaatgacctacaataagtggcttcttttctgccctcactg
cctagaacacagataacatcttatctatcacttttcatgattaaaattca
catgccaatcagagaatgacagatctagccacggattgccctatttaaat
ccgccacgtgtgtttcttgtgcataggattgctacctaaattcttccaat
acctcattttctgcttacacccagagcatcagcagctgcattacaggact
gtgggtgtgaactgattcaacatgccattaatgcacttggccacgcactt
attgtggccagtctgccactcttattca

gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacgccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaacaggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtattcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgctaaacacatgaaactcaag
gagaatgaagactgaagtgtggacactatgcccctccttaggtttgggaa
caaaacacccatggaaggagttacagagacggagtttggagctgagatga
aagggtggaccatgtagagactgccatagccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttattgaaa
ggacgcagatgtagctgtctcttgtgagactatgccggggcccagcaaac
acagaagtggatgctcacagtcagctaatggatggatcatagggctccca
atggaggagctagagaaagtagtcaggagctaaagggatctgcaccctat
agtggaacaacatatgagctaaccagtaccccggagctcttgacctctag
ctgcatatattatcaaagaatggactagtcgcatcactgggaagagaagg
ccaatggactgcaaactttatatggccagtacagaatcagccaatggccg
atgctgccatgacaaattgcgtggtctcatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_33586237_33587424
seq2: B6Ng01-201E03.b_45_1222 (reverse)

seq1  TGAATAA-AGATGCAGACTGTGCCAC-ATAAGTGCTGTGCCAAGTGCATT  48
      ||||||| ||  |||||||| ||||| ||||||||   |||||||||| |
seq2  TGAATAAGAGTGGCAGACTG-GCCACAATAAGTGCGTGGCCAAGTGCA-T  48

seq1  TAATGCATTGTTGTATTCAGTTCACA-CCACAGTCCTGTAATGCCAGCCT  97
      |||||   ||||| | |||||||||| |||||||||||||||| ||||  
seq2  TAATGGCATGTTG-AATCAGTTCACACCCACAGTCCTGTAATG-CAGC--  94

seq1  TGCTGATGCTCTGGGGTTGTAAGCAGAAAAATGA-GTATTTGGAGAATTT  146
      |||||||||||||||  ||||||||| ||||||| ||||| | |||||||
seq2  TGCTGATGCTCTGGG--TGTAAGCAG-AAAATGAGGTATTGGAAGAATTT  141

seq1  AGGTAGCAATTCCTAATGCAC-AGAAACACACGTGGCCGGATTTAAATAG  195
      ||||||||| |||| |||||| |||||||||||||| |||||||||||||
seq2  AGGTAGCAA-TCCT-ATGCACAAGAAACACACGTGG-CGGATTTAAATAG  188

seq1  GGCAATCCGTGGCTAGAATCTGTTCATTCTCCTGATTGGCATGTGAATTT  245
      |||||||||||||||| ||||| ||||||| |||||||||||||||||||
seq2  GGCAATCCGTGGCTAG-ATCTG-TCATTCT-CTGATTGGCATGTGAATTT  235

seq1  TAATCATGAAAAGTGATAGATAAGATGTTATCTGTGTTCTAGGCAGTGAG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCATGAAAAGTGATAGATAAGATGTTATCTGTGTTCTAGGCAGTGAG  285

seq1  GGCAGAAAAGAAGCCACTTATTGTAGGTCATTTACTGTAGGTCAAGTCCA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAAAAGAAGCCACTTATTGTAGGTCATTTACTGTAGGTCAAGTCCA  335

seq1  TTCTGTTCCTTTATAGAGAAAGATAAAAGAGGGGTTTTCTGTAAACCGAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTCCTTTATAGAGAAAGATAAAAGAGGGGTTTTCTGTAAACCGAA  385

seq1  ATGAGTTAGAAAGGCTTAGGAGAAGGTTGTCTTTGATCTAGGCTCAGTGA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTTAGAAAGGCTTAGGAGAAGGTTGTCTTTGATCTAGGCTCAGTGA  435

seq1  AAATGCCAAGTGTGTGCAGACTTTCCAGGCTGCAGAGACACTGCTTGCCA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCCAAGTGTGTGCAGACTTTCCAGGCTGCAGAGACACTGCTTGCCA  485

seq1  GGGAGTGTAGAGTGTGACCTTGGACCAGCCTCCTGTGAACTTGTAGGAAT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTGTAGAGTGTGACCTTGGACCAGCCTCCTGTGAACTTGTAGGAAT  535

seq1  GTAAGTAGCCACCTCACCTGGACCTGTGGAAGCACAAAATTAAAGGTGGC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTAGCCACCTCACCTGGACCTGTGGAAGCACAAAATTAAAGGTGGC  585

seq1  ACTGTGAATGGCCTTTCCTTCAGTCTCAGTTCTATTTTCAGAGGAGCACC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGAATGGCCTTTCCTTCAGTCTCAGTTCTATTTTCAGAGGAGCACC  635

seq1  CTCCTAGGGAAAAAGGAGAGGGACTGGGGGGGACGACATGGGGGAGGTTG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTAGGGAAAAAGGAGAGGGACTGGGGGGGACGACATGGGGGAGGTTG  685

seq1  CTGGAGGGGTAACCACAGGGAGGGGGATATCATTTGAAATGTAAACAAAA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGGGGTAACCACAGGGAGGGGGATATCATTTGAAATGTAAACAAAA  735

seq1  TGATTAATAAAATAATATCAATAACAATAATAATAAATAAAGGTGGTGCT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTAATAAAATAATATCAATAACAATAATAATAAATAAAGGTGGTGCT  785

seq1  CCCAGAGTCATTCTCAGGCTTTGCATTTGATTCTAGATGTATTCAAACAT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAGTCATTCTCAGGCTTTGCATTTGATTCTAGATGTATTCAAACAT  835

seq1  CCATTATAAATGTTCCACAAGTGGAAAATAACTGATTTTTTTAAATAATC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTATAAATGTTCCACAAGTGGAAAATAACTGATTTTTTTAAATAATC  885

seq1  AGAATATTTTGATATTGTATCTTCCCCTTTCTCCCAAAAAAGCGTGGTTT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATATTTTGATATTGTATCTTCCCCTTTCTCCCAAAAAAGCGTGGTTT  935

seq1  CCTTTTTATCACAACTAGACTGTCCACCTCTGACCCAACCATATTTGCAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTTATCACAACTAGACTGTCCACCTCTGACCCAACCATATTTGCAA  985

seq1  AGGGAACACTTACAGGACCAGTGCTTTTCATATCATTTCCCATAGTGCTA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAACACTTACAGGACCAGTGCTTTTCATATCATTTCCCATAGTGCTA  1035

seq1  CAACAGATTCAAGGGTCGTATGCCTGCTGGCCAAGTGCTTTGCTGCTGTG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGATTCAAGGGTCGTATGCCTGCTGGCCAAGTGCTTTGCTGCTGTG  1085

seq1  CATAGTTCCTAGCCCTTTATTTTTAGGGAAAGAGTAGACTCTGAGGGTGC  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTTCCTAGCCCTTTATTTTTAGGGAAAGAGTAGACTCTGAGGGTGC  1135

seq1  TGACTCATCATTTTCCCATCTCAAGCTCTTAGGAGTTGAATTC  1188
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCATCATTTTCCCATCTCAAGCTCTTAGGAGTTGAATTC  1178


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