BAC Information

Click to search

BAC

Clone NameB6Ng01-201N13
Chromosome6 (Build37)
Map Location 14,547,173 - 14,548,353
singlet/doubletsinglet
Overlap genenone
Upstream geneTmem168, B630005N14Rik, Gpr85, 2610001J05Rik, LOC100041043, LOC100040513, LOC667797
Downstream genePpp1r3a, Foxp2, LOC100040568
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-201N13.bB6Ng01-201N13.g
ACCGA022505GA022506
length1,167475
definitionB6Ng01-201N13.b B6Ng01-201N13.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaagggcaggagctagaaaaaccaagtgggcacatttgggctttt
tacaggaaatacctaaccacacaggtcacaatcagctacagtgcttccta
aactttcccactaccttggccagagtcactgaaacagaaggcaaagccct
ataggatatgaggtattagcctaaggagacgctttcatttatgattttca
atagtcttgtgtcttattaattaaaacatacatactttgtattttaaacc
ataatgcctctgtttatttttggcagataaattatgagttttctccaact
gtttccttcgtactcttgctcctgaggtttgtactcttaactcctgctaa
acacatgcaaaattccccgcatttagtcaccataaatctacaacagtcct
gaagctcatggaattctaaataaagtaggctttagggcttgtgtttcctt
ttcttttccttgataagacaccatttaaactgtttttgtttaggaaagaa
tttttaattgtgactcaaaggaaaataaataattattttcaggaaaacgt
atagtatctaaataattacctgaaattatactccacattccccacgtttt
ttgttttgttttgttggttttttttgtttttgtttttgtttttttttaat
ctgactataccgccttgaaggcttaatgtttcatggcttaaagtagaaat
cagcaacacagttggaaagagaaatacaacatctttacacattttgaaaa
aattggtcctgcaagagagccaagctaacagtcgtgctgagttgagagct
cacttacaaatgtattccatgctagctgctcttctacacctgttgggaat
ccatttactttagaaccgatctctatttcctctacctataactcctgcag
taatgggaattggggctccttgcacgacttcttataaactcagtgctgag
actctagtgagacaggtactcgaagatagtggaagctattcagtctattc
agttcaaaaagctagcttcaccaatccaggataaatatctctgagagtat
cagtgaagttatatcactgtgcatgaacggttgtaagacttactgtaagt
cggccgatgaggacttgggaagttcagacgaagtttgttagcttggttaa
gttcaaaatagaatagc

catgaaggtgatctgtaggtgggcagagctcagacaagcaacttgttggg
actctaagaaagtattagaatttcattttgcacataatagatttctggtc
agaagatacaagaacttctcaagctgccattgaggatttgatcatagtag
aaaaacagcaatacctctcctaggcatatacccagaagatgtcccaattt
gtaataaggacacatgctccactatgttcatagcaagcagccttatttat
aatagccagaatctggaaagaacccagatgtccctcaacacaggaatgca
atggaaggaaaggccctggtcatgtgaagatcatatgccccattacaagg
gaatgccagggccaggcagcaggggtaggtgggtgggggagcagggcgga
gggagtgtatagtggacttttaaggataacatttgatatgtctaagaata
aaatatctaatataaaacctatgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_14547173_14548353
seq2: B6Ng01-201N13.b_43_1209

seq1  GAATTCAAGGGCAGGAGCTAGAAAAACCAAGTGGGCACATTTGGGCTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGGCAGGAGCTAGAAAAACCAAGTGGGCACATTTGGGCTTTT  50

seq1  TACAGGAAATACCTAACCACACAGGTCACAATCAGCTACAGTGCTTCCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGAAATACCTAACCACACAGGTCACAATCAGCTACAGTGCTTCCTA  100

seq1  AACTTTCCCACTACCTTGGCCAGAGTCACTGAAACAGAAGGCAAAGCCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTCCCACTACCTTGGCCAGAGTCACTGAAACAGAAGGCAAAGCCCT  150

seq1  ATAGGATATGAGGTATTAGCCTAAGGAGACGCTTTCATTTATGATTTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGATATGAGGTATTAGCCTAAGGAGACGCTTTCATTTATGATTTTCA  200

seq1  ATAGTCTTGTGTCTTATTAATTAAAACATACATACTTTGTATTTTAAACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCTTGTGTCTTATTAATTAAAACATACATACTTTGTATTTTAAACC  250

seq1  ATAATGCCTCTGTTTATTTTTGGCAGATAAATTATGAGTTTTCTCCAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGCCTCTGTTTATTTTTGGCAGATAAATTATGAGTTTTCTCCAACT  300

seq1  GTTTCCTTCGTACTCTTGCTCCTGAGGTTTGTACTCTTAACTCCTGCTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCTTCGTACTCTTGCTCCTGAGGTTTGTACTCTTAACTCCTGCTAA  350

seq1  ACACATGCAAAATTCCCCGCATTTAGTCACCATAAATCTACAACAGTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGCAAAATTCCCCGCATTTAGTCACCATAAATCTACAACAGTCCT  400

seq1  GAAGCTCATGGAATTCTAAATAAAGTAGGCTTTAGGGCTTGTGTTTCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTCATGGAATTCTAAATAAAGTAGGCTTTAGGGCTTGTGTTTCCTT  450

seq1  TTCTTTTCCTTGATAAGACACCATTTAAACTGTTTTTGTTTAGGAAAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTCCTTGATAAGACACCATTTAAACTGTTTTTGTTTAGGAAAGAA  500

seq1  TTTTTAATTGTGACTCAAAGGAAAATAAATAATTATTTTCAGGAAAACGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAATTGTGACTCAAAGGAAAATAAATAATTATTTTCAGGAAAACGT  550

seq1  ATAGTATCTAAATAATTACCTGAAATTATACTCCACATTCCCCACGTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTATCTAAATAATTACCTGAAATTATACTCCACATTCCCCACGTTTT  600

seq1  TTGTTTTGTTTTGTTGGTTTTTTTTGTTTTTGTTTTTGTTTTTTTTTAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGTTTTGTTGGTTTTTTTTGTTTTTGTTTTTGTTTTTTTTTAAT  650

seq1  CTGACTATACCGCCTTGAAGGCTTAATGTTTCATGGCTTAAAGTAGAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTATACCGCCTTGAAGGCTTAATGTTTCATGGCTTAAAGTAGAAAT  700

seq1  CAGCAACACAGTTGGAAAGAGAAATACAACATCTTTACACATTTTGAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAACACAGTTGGAAAGAGAAATACAACATCTTTACACATTTTGAAAA  750

seq1  AATTGGTCCTGCAAGAGAGCCAAGCTAACAGTCGTGCTGAGTTGAGAGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGTCCTGCAAGAGAGCCAAGCTAACAGTCGTGCTGAGTTGAGAGCT  800

seq1  CACTTACAAATGTATTCCATGCTAGCTGCTCTTCTACACCTGTTGGGAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTACAAATGTATTCCATGCTAGCTGCTCTTCTACACCTGTTGGGAAT  850

seq1  CCATTTACTTTAGAACCGATCTCTATTTCCTCTACCTATAACTCCTGCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTACTTTAGAACCGATCTCTATTTCCTCTACCTATAACTCCTGCAG  900

seq1  TAATGGGAATTGGGGCTCCTTGCACGACT--CTATAAACTCAGTGCTGAG  948
      |||||||||||||||||||||||||||||   ||||||||||||||||||
seq2  TAATGGGAATTGGGGCTCCTTGCACGACTTCTTATAAACTCAGTGCTGAG  950

seq1  ACTCTAGTGAGACAGGTACTCGAAGATAAGTGGAAGCTATTCAGTTCTAT  998
      ||||||||||||||||||||||||||| |||||||||||||||| |||| 
seq2  ACTCTAGTGAGACAGGTACTCGAAGAT-AGTGGAAGCTATTCAG-TCTA-  997

seq1  TTCAGTTCAAAAAGCTAGCTTCAACCATTCCAGGATAAATATCTCTGAAG  1048
      |||||||||||||||||||||| |||| ||||||||||||||||||| ||
seq2  TTCAGTTCAAAAAGCTAGCTTC-ACCAATCCAGGATAAATATCTCTG-AG  1045

seq1  AGTTATCAGTGAAGTTAATATCACTGTGCAATGAACGGTTGTAAGACTTA  1098
      || ||||||||||||| |||||||||||| ||||||||||||||||||| 
seq2  AG-TATCAGTGAAGTT-ATATCACTGTGC-ATGAACGGTTGTAAGACTT-  1091

seq1  ACTGTGAAAGTCGGCAGAGGAGGAACTGGAGAGTCACAGACGAAGTTTGT  1148
      |||||  |||||||| || |||||  |||  |||  ||||||||||||||
seq2  ACTGT--AAGTCGGCCGATGAGGACTTGGGAAGT-TCAGACGAAGTTTGT  1138

seq1  TAGCTAGTTTTAAGTTTTAAAAATAAAAATAGC  1181
      ||||| |  |||||  || ||||| | ||||||
seq2  TAGCTTG-GTTAAG--TTCAAAAT-AGAATAGC  1167


| Home | SequenceCutter | Blast | Download |