BAC Information

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BAC

Clone NameB6Ng01-202G13
Chromosome6 (Build37)
Map Location 68,739,682 - 68,740,854
singlet/doubletsinglet
Overlap geneIgk
Upstream geneEG628072, Igkv9-129, Igkv9-128, EG243433, Igkv14-126-1, LOC723993, EG628127, ENSMUSG00000050218, EG243431, EG628144, Igkv1-122, EG667435, EG434025, Igkv9-119, Igkv14-118-2, Igkv14-118-1, EG384405, Igkv11-118, Igkv1-117, EG434026, EG628206, Igkv11-114, Igkv2-113, LOC232047, EG381776, Igkv14-111, Igkv1-110, Igkv2-109, Igkv1-108, Igkv2-107, Igkv11-106, Igkv2-105, LOC384408, Gm1067, Igkv15-103, Igkv15-102, Igkv20-101-2, Igkv15-101-1, Igkv15-101, Igkv14-100, Igkv1-99, Igkv12-98, Igkv15-97, Igkv10-96, Igkv2-95-2, Igkv2-95-1, EG434031, EG667550, Igkv2-93-1, Igkv19-93, Gm1408, ENSMUSG00000056850
Downstream geneIgkv4-90, Igkv13-89-1, Igkv12-89, Igkv1-88, Igkv13-87, Gm459, Igkv13-85, Igkv13-84, Igkv4-83, Igkv13-82, Gm460, Igkv13-80-1, Igkv4-80, Gm194, EG628498, Igkv4-78, EG667621, Igkv13-76, Igkv4-75, Igkv13-74-1, LOC236047, Igkv13-73-1, EG628516, Gm1499, Igkv13-71-1, Igkv4-71, Gm1502, EG628541, Gm1419, Igkv12-67, Igkv12-66, Igkv4-65, Igkv13-64, EG628571, Igkv13-62-1, EG636752, Igkv13-61-1, Igkv4-61, EG667683, Igkv4-60, Gm1077, Igkv13-57-2, Gm1418, Igkv13-57-1, Gm189, Igkv13-56-1, Igkv4-56, Igkv13-55-1, Gm1524, Igkv13-54-1, Igkv4-54, Gm1420, Igkv4-51, Gm1069, Igkv12-49, Igkv5-48, ENSMUSG00000029975, Igkv12-46, Igkv5-45
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-202G13.bB6Ng01-202G13.g
ACCGA022907GA022908
length1,2631,170
definitionB6Ng01-202G13.b B6Ng01-202G13.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcccatttcaatgtttgtatgtatgcaggagtcatccttgctcaag
tcttgtttatgaaccaaccattggaccatctgggtacagcttctctggtg
tttctaggagacacagtctttcttagttagagttttactgctgtgaacag
acaccatgaccaaagaagctcttataaggacaccatttaattggggcttt
cttacaggttccaaggtttagtccattatcttcaaggtgagaacattgca
gcatccagtcaagtatggtgcaggaggagctgagagttcaacatcttcat
cttaaggctcctagcagaatactggctcccaggcagttagcatgagggtc
ttaaagacatacccatagtgacacgcctactccaaaggcccaactttcta
atagtgccactccctgggctgagcattttcaaatcatcacaaaatcttag
agaaaatctacaacttctctggcacttgaaatatttctacccactgtgtt
tctatccctggggtataggtgaagtaattgtgttgtcatttgatcatttg
ggaatggttaccacatgatctccaaatctctgcattttgatcatttgtgt
ttttttttaatcaaggcattgtttattagatattttcttcatttacagtt
caaatgctatccccaacccccccccccaacctgctccccatcctaccaac
tcccacttcctggccctagcattcccctgtactggggcatatgatcttcg
taataccaagggcctctcctcccattgatggctgactagatcatcctctg
ctacatatgcaactagagacatagctctggggggtactgggttagttcat
attgttggtttttttttaagaatagtttctatctgttaaaaagaggccgc
tcccccactgtcatctaaaatatatgaattgaccaaactgtatttatgta
taaatagaggggaatatgaaagcatgaagctgagaaagatcaagactggt
gttgtggaatttgtatgtaatttatgcgggcaatacagtaagtggcctaa
aagttaagaaaaattgattatataaaaataaactctaactcttaatccta
ttcgaagttccagaatcaagggaatgacaaaagtttccaaaaacattaaa
gataagaattgaaatttggagaaacttgcctgttgtgtaccatttatcca
ttatgcagcgtgtctcccatttagaatggaaaaaaatgtgaacgccatat
agctggcacgcac
gaattcaaccctagataaagaagtaggtataactgtggacattttgagag
taggagaaatggttttatatgtagtagacccactgagagagttttctaat
atcaagtggtcagcaaaacaggactgtattctagacactgttttcgactt
ctctttacctcaaaggatgctaggaatggtgaaagtggttttctgatttt
tcttctgatagaaggtgcccaggggtcctagagcttctcatcttgttatg
tatttacttatataatcaacctgctttccaggtaaaattatctgtatatg
gagaccttcaatatctgcaagaccttgattatattatctgcaagatcttg
gcagtcaaattcctggtatagatagcaaattcttgtccaggacttattct
atacagagcagttagtagtatggtggttgctggaggagcagaactgttag
tgctagagcataaagcaacttgttggattaccatgcctcagaagatatcc
gcacatccatgcacatgttgacagaactaactagagtaagtgtgttataa
aaagagaagtggaaatttgggaaagtggttgtgttacaatgatgtaaaaa
gaatgaaagggaagaagtgtggatagatatgataatattttgtagtatgt
atgatactcaaaaataaaaaaaattaaaatgagctttcattctattccag
gggttcactaagttatcagtctccccctctttcctcttcattcctgatac
cactgaaaaaataccagcatagccactcttgatatttaataaatcctttt
acatctcaatatatttctttattttctttctgtgtttcctagatttttct
gactttatctgtagcggaagctcctctttctccctcctctttctcctttc
cccttttagtatacttttcaatcattctgtgtgttttgtcttttattttc
taatatatttttccactttttctctttgaactggtattaatcactcattt
atgatcaactatttccctcttctaattactatagctataacagtaacagg
gcgattcagctgtagggtacctaatgctccagaggtgggagcagattatg
cttattatgttcaactaaggaaccataggaggaatttttgagaattaatc
tcaccaataaccatgaatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_68739682_68740854
seq2: B6Ng01-202G13.g_66_1235

seq1  GAATTCAACCCTAGATAAAGAAGTAGGTATAACTGTGGACATTTTGAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACCCTAGATAAAGAAGTAGGTATAACTGTGGACATTTTGAGAG  50

seq1  TAGGAGAAATGGTTTTATATGTAGTAGACCCACTGAGAGAGTTTTCTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGAAATGGTTTTATATGTAGTAGACCCACTGAGAGAGTTTTCTAAT  100

seq1  ATCAAGTGGTCAGCAAAACAGGACTGTATTCTAGACACTGTTTTCGACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGTGGTCAGCAAAACAGGACTGTATTCTAGACACTGTTTTCGACTT  150

seq1  CTCTTTACCTCAAAGGATGCTAGGAATGGTGAAAGTGGTTTTCTGATTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTACCTCAAAGGATGCTAGGAATGGTGAAAGTGGTTTTCTGATTTT  200

seq1  TCTTCTGATAGAAGGTGCCCAGGGGTCCTAGAGCTTCTCATCTTGTTATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGATAGAAGGTGCCCAGGGGTCCTAGAGCTTCTCATCTTGTTATG  250

seq1  TATTTACTTATATAATCAACCTGCTTTCCAGGTAAAATTATCTGTATATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTACTTATATAATCAACCTGCTTTCCAGGTAAAATTATCTGTATATG  300

seq1  GAGACCTTCAATATCTGCAAGACCTTGATTATATTATCTGCAAGATCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCTTCAATATCTGCAAGACCTTGATTATATTATCTGCAAGATCTTG  350

seq1  GCAGTCAAATTCCTGGTATAGATAGCAAATTCTTGTCCAGGACTTATTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCAAATTCCTGGTATAGATAGCAAATTCTTGTCCAGGACTTATTCT  400

seq1  ATACAGAGCAGTTAGTAGTATGGTGGTTGCTGGAGGAGCAGAACTGTTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGAGCAGTTAGTAGTATGGTGGTTGCTGGAGGAGCAGAACTGTTAG  450

seq1  TGCTAGAGCATAAAGCAACTTGTTGGATTACCATGCCTCAGAAGATATCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGAGCATAAAGCAACTTGTTGGATTACCATGCCTCAGAAGATATCC  500

seq1  GCACATCCATGCACATGTTGACAGAACTAACTAGAGTAAGTGTGTTATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATCCATGCACATGTTGACAGAACTAACTAGAGTAAGTGTGTTATAA  550

seq1  AAAGAGAAGTGGAAATTTGGGAAAGTGGTTGTGTTACAATGATGTAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAAGTGGAAATTTGGGAAAGTGGTTGTGTTACAATGATGTAAAAA  600

seq1  GAATGAAAGGGAAGAAGTGTGGATAGATATGATAATATTTTGTAGTATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAAAGGGAAGAAGTGTGGATAGATATGATAATATTTTGTAGTATGT  650

seq1  ATGATACTCAAAAATAAAAAAAATTAAAATGAGCTTTCATTCTATTCCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATACTCAAAAATAAAAAAAATTAAAATGAGCTTTCATTCTATTCCAG  700

seq1  GGGTTCACTAAGTTATCAGTCTCCCCCTCTTTCCTCTTCATTCCTGATAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCACTAAGTTATCAGTCTCCCCCTCTTTCCTCTTCATTCCTGATAC  750

seq1  CACTGAAAAAATACCAGCATAGCCACTCTTGATATTTAATAAATCCTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAAAAAATACCAGCATAGCCACTCTTGATATTTAATAAATCCTTTT  800

seq1  ACATCTCAATATATTTCTTTATTTTCTTTCTGTGTTTCCTAGATTTTTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTCAATATATTTCTTTATTTTCTTTCTGTGTTTCCTAGATTTTTCT  850

seq1  GACTTTATCTGTAGCGGAAGCTCCTCTTTCTCCCTCCTCTTTCTCCTTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTATCTGTAGCGGAAGCTCCTCTTTCTCCCTCCTCTTTCTCCTTTC  900

seq1  CCCTTTTAGTATACTTTTCAATCATTCTGTGTGTTTTGTCTTTTATTTTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTTAGTATACTTTTCAATCATTCTGTGTGTTTTGTCTTTTATTTTC  950

seq1  TAATATTATTTTTCCACTTTTTCTCTTTGAACTGGTATTTATCACTCATT  1000
      ||||| ||||||||||||||||||||||||||||||||| ||||||||||
seq2  TAATA-TATTTTTCCACTTTTTCTCTTTGAACTGGTATTAATCACTCATT  999

seq1  TATGATCAACTATTTCCCTCTTCCTAATTACTTAATAGCTAT-ACAGTAA  1049
      |||||||||||||||||||||| |||||||||  |||||||| |||||||
seq2  TATGATCAACTATTTCCCTCTT-CTAATTACT--ATAGCTATAACAGTAA  1046

seq1  CAGGGCCGATTCAGCTGTAGGGTTACTTATGCTCCCAGA---GTGAGCAG  1096
      ||||| |||||||||||||||||  || ||||| |||||   | ||||||
seq2  CAGGG-CGATTCAGCTGTAGGGTACCTAATGCT-CCAGAGGTGGGAGCAG  1094

seq1  A-TATGCTAATTATGTTCAAACTTAAGAACATAAGGAAG-ATTTTTGAGA  1144
      | |||||| ||||||||| |||| | ||||   |||| | ||||||||||
seq2  ATTATGCTTATTATGTTC-AACTAAGGAACCATAGGAGGAATTTTTGAGA  1143

seq1  ATTAATCTCACCAATAAACCCATGAATAT  1173
      |||||||||||||||||  ||||||||||
seq2  ATTAATCTCACCAATAA--CCATGAATAT  1170