BAC Information

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BAC

Clone NameB6Ng01-203B10
Chromosome6 (Build37)
Map Location 33,583,327 - 33,779,491
singlet/doubletdoublet
Overlap geneExoc4
Upstream geneChchd3, LOC100039118, Gm1401
Downstream geneLrguk, Slc35b4, Akr1b3, Akr1b8, LOC664942, 2310005E10Rik, Akr1b7, Bpgm, LOC100039184, Cald1, Agbl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-203B10.bB6Ng01-203B10.g
ACCGA023403GA023404
length1,1981,075
definitionB6Ng01-203B10.b B6Ng01-203B10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,583,327 - 33,584,526)(33,778,432 - 33,779,491)
sequence
gaattcactctaaatacctgagactagaggattctgtttaaaattagtaa
gcagtggttgtttacaagagaagcagttacatgcttctgtggatgccctg
aaattgtgctagtctcatttccttagaggtattttgttgtttctatttta
tgtcatcctcttccatctgcaacccagtctttcttgtttgctgttttccc
tccaaaaacttcttactacaagtcaagtagcttggagggaaacagtctta
aagtttatcatcagtctctaagccaacatctaacacactcagcatttctt
ggaacacagttgtctctgtagaggtgattgattgttcatgaccacggtga
ggcctctgctggaccacttcagcctcctgctttaatagtcattgagtttc
tcctccagctcccctctctacacgtacagagtgaaaaactctagatatct
tgtgccctagcctcatttactagtacaagaatgagaaagttgaaggaatt
attaaagctgggactctcgttgacacttattaaagcataggagaacttta
tttggctggagctgcagtaaggctttgtgagagagtaagcttagctcatg
cgtcagcatcctagaggtctgtatccaccctctggatagtagatggaaaa
tacttcaagggaaaattcttcaaaggaaatgccagtggtaagagagatcc
agaaaaatcatcctgtcaggattatcactaactgcaggctcaagtgttac
gttattgaggctggtggataaataatgtaatcacacagcaaggtaggagc
tgtgacattgagttatgtcccagtggtgatgagttgtttgattctctatc
cagattcatatgtatacctattcatctgcatatgggaggctgcagttaaa
agatgggtgagttcaaggccattataagaagaccctttataagaagaaat
gtagtacaaggagtaatcatccccctccacaaagacaagtttatgcttcc
aggtttataagagagggtggaggactatttgtatggagggctcttttttg
tattctgctaatttcatttggcttcagcaaagatctttattgcatgtgac
ccattttgtagaaacacattgaatattgctcatccacaaaaaattaatgg
gttcatagcgattaacttaacttatcttaatctgagaaatatttaatt

gaattcttggcacttctgtcaaaactcaatgaactgtgtatgcatgagtg
catttctgggctctcaattctattcttctggtcaatgagtctgtttttat
gtcagaactgtggtgttttaattactagcactttgtagcttagattgaaa
tcaggtagagcaatgtttccagttttgttcttttagctcatgactgtctt
ggttatttttggttttacttttgtgattccacatgaatttgaggtttaaa
aaatatttctacaaaaatatatagtaaggtctgggacatatatatataca
cacacacacatacaaaaatacatagtagtattcacatacggctgtatata
cctctaagcccaagatagggggactgaaataggtagattccaggaacttg
ctggctagccaggcaagccaaaatggtgagcttcaggttcaatgagagac
cctgtctctgggcaatagatggagaatacagatgaagacaaggacatcat
attccacatttatgagtattgctgcatgaattaacacactaatttacata
tagcaaacaatacaacgggcacgcatatgtgcgaacacacaccaacactt
ggattttgaaaggcactgcactgagtctgtacgttcccttgagtagtatg
gccatcttgtcgttttcacaaaatgaatcctttctgccaacatgggttat
tacaccagtcacttgtgccttcttctcccattcacagtatcacatttgtt
ctgttgagttcgtaggtttttcatctccttggttacatttattcctaagt
gttctttgtagtctttgaaaaaggactgtcctcccccttactttcattat
gttcattctgagcatacggaagcgtgactgacttctgttctctgcagttc
ttactggattctcttagtgggcctagtagtttgtattggcaggctcttcg
ggtttccattgtctgtcagtgtactgaccatgtcattagtaaaatgcaac
attttacttatcctattctttcatttgctttatttgccacttctctctgc
ccagatctttggagggacgatttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_33583327_33584526
seq2: B6Ng01-203B10.b_43_1240

seq1  GAATTCACTCTAAATACCTGAGACTAGAGGATTCTGTTTAAAATTAGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTAAATACCTGAGACTAGAGGATTCTGTTTAAAATTAGTAA  50

seq1  GCAGTGGTTGTTTACAAGAGAAGCAGTTACATGCTTCTGTGGATGCCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGGTTGTTTACAAGAGAAGCAGTTACATGCTTCTGTGGATGCCCTG  100

seq1  AAATTGTGCTAGTCTCATTTCCTTAGAGGTATTTTGTTGTTTCTATTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGTGCTAGTCTCATTTCCTTAGAGGTATTTTGTTGTTTCTATTTTA  150

seq1  TGTCATCCTCTTCCATCTGCAACCCAGTCTTTCTTGTTTGCTGTTTTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATCCTCTTCCATCTGCAACCCAGTCTTTCTTGTTTGCTGTTTTCCC  200

seq1  TCCAAAAACTTCTTACTACAAGTCAAGTAGCTTGGAGGGAAACAGTCTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAAACTTCTTACTACAAGTCAAGTAGCTTGGAGGGAAACAGTCTTA  250

seq1  AAGTTTATCATCAGTCTCTAAGCCAACATCTAACACACTCAGCATTTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTATCATCAGTCTCTAAGCCAACATCTAACACACTCAGCATTTCTT  300

seq1  GGAACACAGTTGTCTCTGTAGAGGTGATTGATTGTTCATGACCACGGTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACACAGTTGTCTCTGTAGAGGTGATTGATTGTTCATGACCACGGTGA  350

seq1  GGCCTCTGCTGGACCACTTCAGCCTCCTGCTTTAATAGTCATTGAGTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCTGCTGGACCACTTCAGCCTCCTGCTTTAATAGTCATTGAGTTTC  400

seq1  TCCTCCAGCTCCCCTCTCTACACGTACAGAGTGAAAAACTCTAGATATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCAGCTCCCCTCTCTACACGTACAGAGTGAAAAACTCTAGATATCT  450

seq1  TGTGCCCTAGCCTCATTTACTAGTACAAGAATGAGAAAGTTGAAGGAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCCTAGCCTCATTTACTAGTACAAGAATGAGAAAGTTGAAGGAATT  500

seq1  ATTAAAGCTGGGACTCTCGTTGACACTTATTAAAGCATAGGAGAACTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGCTGGGACTCTCGTTGACACTTATTAAAGCATAGGAGAACTTTA  550

seq1  TTTGGCTGGAGCTGCAGTAAGGCTTTGTGAGAGAGTAAGCTTAGCTCATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCTGGAGCTGCAGTAAGGCTTTGTGAGAGAGTAAGCTTAGCTCATG  600

seq1  CGTCAGCATCCTAGAGGTCTGTATCCACCCTCTGGATAGTAGATGGAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCAGCATCCTAGAGGTCTGTATCCACCCTCTGGATAGTAGATGGAAAA  650

seq1  TACTTCAAGGGAAAATTCTTCAAAGGAAATGCCAGTGGTAAGAGAGATCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCAAGGGAAAATTCTTCAAAGGAAATGCCAGTGGTAAGAGAGATCC  700

seq1  AGAAAAATCATCCTGTCAGGATTATCACTAACTGCAGGCTCAAGTGTTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAATCATCCTGTCAGGATTATCACTAACTGCAGGCTCAAGTGTTAC  750

seq1  GTTATTGAGGCTGGTGGATAAATAATGTAATCACACAGCAAGGTAGGAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTGAGGCTGGTGGATAAATAATGTAATCACACAGCAAGGTAGGAGC  800

seq1  TGTGACATTGAGTTATGTCCCAGTGGTGATGAGTTGTTTGATTCTCTATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACATTGAGTTATGTCCCAGTGGTGATGAGTTGTTTGATTCTCTATC  850

seq1  CAGATTCATATGTATACCTATTCATCTGCATATGGGAGGCTGCAGTTAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTCATATGTATACCTATTCATCTGCATATGGGAGGCTGCAGTTAAA  900

seq1  AGAT-GGTGAGTTCAAGGCCATTATAAGAAGACCCTTTATAAGAAGAAAT  949
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGGTGAGTTCAAGGCCATTATAAGAAGACCCTTTATAAGAAGAAAT  950

seq1  GTAGTACAA-GAGTAATCATCCCCCTCCCACAAAGACAAGTTTATGCTTC  998
      ||||||||| |||||||||||||||| |||||||||||||||||||||||
seq2  GTAGTACAAGGAGTAATCATCCCCCT-CCACAAAGACAAGTTTATGCTTC  999

seq1  CAGGTTTATAAGAAGAGGGTGGAGGACTATTTGTATGGAGGGCTC-TTTT  1047
      |||||||||||| |||||||||||||||||||||||||||||||| ||||
seq2  CAGGTTTATAAG-AGAGGGTGGAGGACTATTTGTATGGAGGGCTCTTTTT  1048

seq1  TGTA-TCTGCTAATTTTCATTTGCCTTCAGCACAGATTCTTATGCCATGG  1096
      |||| |||||||| ||||||||| |||||||| ||||  ||||  ||| |
seq2  TGTATTCTGCTAA-TTTCATTTGGCTTCAGCAAAGATCTTTATTGCAT-G  1096

seq1  TGACACATTTTGTAGAAACACATTGATAGTTGCTTCATCCACAAAAAAAT  1146
      |||| |||||||||||||||||||||   |||| |||||||||||||| |
seq2  TGACCCATTTTGTAGAAACACATTGAATATTGC-TCATCCACAAAAAATT  1145

seq1  TAT-GGTTCATAGCGATGTAAC-TAAATTATCTTAATATTTGAGAAATAT  1194
       || ||||||||||||| |||| ||| ||||||||  || ||||||||||
seq2  AATGGGTTCATAGCGAT-TAACTTAACTTATCTTA--ATCTGAGAAATAT  1192

seq1  ATAATT  1200
       |||||
seq2  TTAATT  1198


seq1: chr6_33778432_33779491
seq2: B6Ng01-203B10.g_85_1140 (reverse)

seq1  TAAAATCCTTCCCTCAAAGATCTGGGCAGGAGGAGAAGTTGGGCAAAT-A  49
      ||||||| | ||  |||||||||||||||   |||||||  ||||||| |
seq2  TAAAATCGTCCCTCCAAAGATCTGGGCAG--AGAGAAGT--GGCAAATAA  46

seq1  AGCAAATGAAAGAATAGGAATAAGTAAAATTGTTGCATTTTACTAATGAC  99
      |||||||||||||||||| |||||||||| ||||||||||||||||||||
seq2  AGCAAATGAAAGAATAGG-ATAAGTAAAA-TGTTGCATTTTACTAATGAC  94

seq1  ATGGTCAGTAACACTGACAGACAATGG-AACCCGAAGAGCCTGCCAATAC  148
      ||||||||| ||||||||||||||||| ||||||||||||||||||||||
seq2  ATGGTCAGT-ACACTGACAGACAATGGAAACCCGAAGAGCCTGCCAATAC  143

seq1  AAACTACTAGGCCCACTAAGAGAATCCAGTAAG-ACTGCAGAGAACAGAA  197
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AAACTACTAGGCCCACTAAGAGAATCCAGTAAGAACTGCAGAGAACAGAA  193

seq1  GTCAGTCACGCTTCCGTATGCTCAGAATGAACATAATGAAAGTAAGGGGG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTCACGCTTCCGTATGCTCAGAATGAACATAATGAAAGTAAGGGGG  243

seq1  AGGACAGTCCTTTTTCAAAGACTACAAAGAACACTTAGGAATAAATGTAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAGTCCTTTTTCAAAGACTACAAAGAACACTTAGGAATAAATGTAA  293

seq1  CCAAGGAGATGAAAAACCTACGAACTCAACAGAACAAATGTGATACTGTG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGAGATGAAAAACCTACGAACTCAACAGAACAAATGTGATACTGTG  343

seq1  AATGGGAGAAGAAGGCACAAGTGACTGGTGTAATAACCCATGTTGGCAGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGAGAAGAAGGCACAAGTGACTGGTGTAATAACCCATGTTGGCAGA  393

seq1  AAGGATTCATTTTGTGAAAACGACAAGATGGCCATACTACTCAAGGGAAC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATTCATTTTGTGAAAACGACAAGATGGCCATACTACTCAAGGGAAC  443

seq1  GTACAGACTCAGTGCAGTGCCTTTCAAAATCCAAGTGTTGGTGTGTGTTC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGACTCAGTGCAGTGCCTTTCAAAATCCAAGTGTTGGTGTGTGTTC  493

seq1  GCACATATGCGTGCCCGTTGTATTGTTTGCTATATGTAAATTAGTGTGTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATATGCGTGCCCGTTGTATTGTTTGCTATATGTAAATTAGTGTGTT  543

seq1  AATTCATGCAGCAATACTCATAAATGTGGAATATGATGTCCTTGTCTTCA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCATGCAGCAATACTCATAAATGTGGAATATGATGTCCTTGTCTTCA  593

seq1  TCTGTATTCTCCATCTATTGCCCAGAGACAGGGTCTCTCATTGAACCTGA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTATTCTCCATCTATTGCCCAGAGACAGGGTCTCTCATTGAACCTGA  643

seq1  AGCTCACCATTTTGGCTTGCCTGGCTAGCCAGCAAGTTCCTGGAATCTAC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCACCATTTTGGCTTGCCTGGCTAGCCAGCAAGTTCCTGGAATCTAC  693

seq1  CTATTTCAGTCCCCCTATCTTGGGCTTAGAGGTATATACAGCCGTATGTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTCAGTCCCCCTATCTTGGGCTTAGAGGTATATACAGCCGTATGTG  743

seq1  AATACTACTATGTATTTTTGTATGTGTGTGTGTGTATATATATATGTCCC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTACTATGTATTTTTGTATGTGTGTGTGTGTATATATATATGTCCC  793

seq1  AGACCTTACTATATATTTTTGTAGAAATATTTTTTAAACCTCAAATTCAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTTACTATATATTTTTGTAGAAATATTTTTTAAACCTCAAATTCAT  843

seq1  GTGGAATCACAAAAGTAAAACCAAAAATAACCAAGACAGTCATGAGCTAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAATCACAAAAGTAAAACCAAAAATAACCAAGACAGTCATGAGCTAA  893

seq1  AAGAACAAAACTGGAAACATTGCTCTACCTGATTTCAATCTAAGCTACAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACAAAACTGGAAACATTGCTCTACCTGATTTCAATCTAAGCTACAA  943

seq1  AGTGCTAGTAATTAAAACACCACAGTTCTGACATAAAAACAGACTCATTG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTAGTAATTAAAACACCACAGTTCTGACATAAAAACAGACTCATTG  993

seq1  ACCAGAAGAATAGAATTGAGAGCCCAGAAATGCACTCATGCATACACAGT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAAGAATAGAATTGAGAGCCCAGAAATGCACTCATGCATACACAGT  1043

seq1  TCATTGAGTTTTG  1060
      |||||||||||||
seq2  TCATTGAGTTTTG  1056


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