BAC Information

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BAC

Clone NameB6Ng01-203H04
Chromosome6 (Build37)
Map Location 72,226,102 - 72,358,503
singlet/doubletdoublet
Overlap geneSftpb, Usp39, 0610030E20Rik, Tmem150, 2500002L14Rik, Vamp5, Vamp8
Upstream geneKrcc1, Gm1070, Cd8b1, LOC100042853, Cd8a, Rmnd5a, LOC100042863, Rnf103, Vps24, Jmjd1a, Ppia-ps6_731.1, LOC668029, LOC668034, Reep1, Mrpl35, Immt, Ptcd3, Rpo1-4, LOC668057, St3gal5, Atoh8
Downstream geneGgcx, Mat2a, Sh2d6, Capg, Rbed1, Retsat, Tgoln1, LOC100038890, Tcf3, Kcmf1, Tmsb10, Dnahc6, Suclg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-203H04.bB6Ng01-203H04.g
ACCGA023659GA023660
length7981,086
definitionB6Ng01-203H04.b B6Ng01-203H04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,357,967 - 72,358,503)(72,226,102 - 72,227,196)
sequence
gaattcttttttttttttaaagatttatttattattatatctaagtacac
tgtagctgtcttcagacacaccagaagagggcatcagatctcattacaga
tggttgtgagccaccatgtggttgctgggatttgaacttcggaccttcgg
aagagcagtcggtgctcttaaccactgagccatctctccagccccccccc
ctttttttgttttgttatttttttaaagatttatttattattacatgtaa
gcacactgtagctgtcctcagacactccagaagagggagtcagatctcgt
tacagatggttgagttggtgttttctgttttaactaatttttaaatgtgt
gtatgtgtgtgtgtgtgtgtgtgcctacagatcctgtggagctggatcac
aggcagttatcagctgcccagtgtggtgctgacacctgaacttggcttct
ggaagagcagcaagtgtgcttaaccgctgagccatctctccagcccattt
ctgaagttctttaatcttccagttcactgctttgtgatccaaacccagat
gaccccttagagactgcagggatctgtaaggcaaacagttaagtacatag
actatttcaagagtggactcagaggcatgccatgtggtaagaccttaaag
ttggtataacctgaattataggtggggaataacctgtagtacagatgaag
tggaactttaagtcatcattcctgttttaatcttttatctggctgttttt
atccaacctcctctgtgtaaattttgccttttgttaatctctgcccat
gaattctatttatttgcttgtcttatgttgttgttgttattgttgttttg
aggcagcatctcatgtagcacaaactcaaacttggtatgtagccaaatcc
tgatcctcttgccccaacttcccaagtgctgggattacacacaaattcca
gtacacttttatgtaggagtgttttgtctgcgtacatatttatgcatcac
atgcatgcagtgcccaaggcggccagaagagggtatcagatctgaaattg
gagtcttgggtgttcatgagctgccggttaggggctgagaatcaaacctg
ggccctctgcaagagcagcgggtgctcttaacccctgagccacctctcaa
gccaggagtttggatcatttgaaaaagctttggatgtgggcatgctctgt
ccggagacggtaactccagtcctcccctgctctctctccctgaggtggtt
tccttgcccactctcaacccttagttcccattttgcctctttgggctgta
aaaactgcttcggccaccgaggagctagaagggttacccttgttcctgtg
ggcttgcgtcagctggccaagcctgtggctctcggggccagtcacattta
ttccctagaatcgaggactgagagggaggatctctgtgtagctgggagca
cgttctgtttccagaaggccttgaaaagcttaatgcagccttgtgaagag
gcagcattggggtcatggatgggggtgatcaaaatggacaactttatttc
caaggaatatcttcgcctgctgggagctgggttcaaaaccttactctctg
gttccatgcatctctctccaagtccttctacccccagactccccgggtgg
tcacctgccctcaaccaacctcgatgctcactgccctcctacccaccttc
ctggctggaaacgtaatccaggcccttgttgttccaccaggaccctttct
gccctcctcctcgggcccccactgaagctcagagcagcgaggggaaagag
ctggcttcctccgcacacttcccaggaaccacgagtcctccacccccatc
ttcgttcccacctcagcaacgcccctcggctcagtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_72357967_72358503
seq2: B6Ng01-203H04.b_297_837 (reverse)

seq1  ATGGGCAGAGATTAACAAAA-GCAAAATTTACACAGAGGAGGTTGGAT-A  48
      |||||||||||||||||||| ||||||||||||||||||||||||||| |
seq2  ATGGGCAGAGATTAACAAAAGGCAAAATTTACACAGAGGAGGTTGGATAA  50

seq1  AAACAGCCAGATAAAAGATTAAAACAGGAATGATGACTTAAAGTT-CACT  97
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AAACAGCCAGATAAAAGATTAAAACAGGAATGATGACTTAAAGTTCCACT  100

seq1  TCATCTGTACTACAGGTTATT-CCCACCTATAATTCAGGTTATACCAACT  146
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TCATCTGTACTACAGGTTATTCCCCACCTATAATTCAGGTTATACCAACT  150

seq1  TTAAGGTCTTACCACATGGCATGCCTCTGAGTCCACTCTTGAAATAGTCT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGTCTTACCACATGGCATGCCTCTGAGTCCACTCTTGAAATAGTCT  200

seq1  ATGTACTTAACTGTTTGCCTTACAGATCCCTGCAGTCTCTAAGGGGTCAT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACTTAACTGTTTGCCTTACAGATCCCTGCAGTCTCTAAGGGGTCAT  250

seq1  CTGGGTTTGGATCACAAAGCAGTGAACTGGAAGATTAAAGAACTTCAGAA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTTTGGATCACAAAGCAGTGAACTGGAAGATTAAAGAACTTCAGAA  300

seq1  ATGGGCTGGAGAGATGGCTCAGCGGTTAAGCACACTTGCTGCTCTTCCAG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCTGGAGAGATGGCTCAGCGGTTAAGCACACTTGCTGCTCTTCCAG  350

seq1  AAGCCAAGTTCAGGTGTCAGCACCACACTGGGCAGCTGATAACTGCCTGT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAAGTTCAGGTGTCAGCACCACACTGGGCAGCTGATAACTGCCTGT  400

seq1  GATCCAGCTCCACAGGATCTGTAGGCACACACACACACACACACATACAC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCAGCTCCACAGGATCTGTAGGCACACACACACACACACACATACAC  450

seq1  ACATTTAAAAATTAGTTAAAACAGAAAACACCAACTCAACCATCTGTAAC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTAAAAATTAGTTAAAACAGAAAACACCAACTCAACCATCTGTAAC  500

seq1  GAGATCTGACTCCCTCTTCTGGAGTGTCTGAGGACAGCTAC  537
      |||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCTGACTCCCTCTTCTGGAGTGTCTGAGGACAGCTAC  541

seq1: chr6_72226102_72227196
seq2: B6Ng01-203H04.g_61_1146

seq1  GAATTCTATTTATTTGCTTGTCTTATGTTGTTGTTGTTATTGTTGTTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATTTATTTGCTTGTCTTATGTTGTTGTTGTTATTGTTGTTTTG  50

seq1  AGGCAGCATCTCATGTAGCACAAACTCAAACTTGGTATGTAGCCAAATCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGCATCTCATGTAGCACAAACTCAAACTTGGTATGTAGCCAAATCC  100

seq1  TGATCCTCTTGCCCCAACTTCCCAAGTGCTGGGATTACACACAAATTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCTCTTGCCCCAACTTCCCAAGTGCTGGGATTACACACAAATTCCA  150

seq1  GTACACTTTTATGTAGGAGTGTTTTGTCTGCGTACATATTTATGCATCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACTTTTATGTAGGAGTGTTTTGTCTGCGTACATATTTATGCATCAC  200

seq1  ATGCATGCAGTGCCCAAGGCGGCCAGAAGAGGGTATCAGATCTGAAATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATGCAGTGCCCAAGGCGGCCAGAAGAGGGTATCAGATCTGAAATTG  250

seq1  GAGTCTTGGGTGTTCATGAGCTGCCGGTTAGGGGCTGAGAATCAAACCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTTGGGTGTTCATGAGCTGCCGGTTAGGGGCTGAGAATCAAACCTG  300

seq1  GGCCCTCTGCAAGAGCAGCGGGTGCTCTTAACCCCTGAGCCACCTCTCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTCTGCAAGAGCAGCGGGTGCTCTTAACCCCTGAGCCACCTCTCAA  350

seq1  GCCAGGAGTTTGGATCATTTGAAAAAGCTTTGGATGTGGGCATGCTCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGAGTTTGGATCATTTGAAAAAGCTTTGGATGTGGGCATGCTCTGT  400

seq1  CCGGAGACGGTAACTCCAGTCCTCCCCTGCTCTCTCTCCCTGAGGTGGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGAGACGGTAACTCCAGTCCTCCCCTGCTCTCTCTCCCTGAGGTGGTT  450

seq1  TCCTTGCCCACTCTCAACCCTTAGTTCCCATTTTGCCTCTTTGGGCTGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGCCCACTCTCAACCCTTAGTTCCCATTTTGCCTCTTTGGGCTGTA  500

seq1  AAAACTGCTTCGGCCACCGAGGAGCTAGAAGGGTTACCCTTGTTCCTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGCTTCGGCCACCGAGGAGCTAGAAGGGTTACCCTTGTTCCTGTG  550

seq1  GGCTTGCGTCAGCTGGCCAAGCCTGTGGCTCTCGGGGCCAGTCACATTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGCGTCAGCTGGCCAAGCCTGTGGCTCTCGGGGCCAGTCACATTTA  600

seq1  TTCCCTAGAATCGAGGACTGAGAGGGAGGATCTCTGTGTAGCTGGGAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTAGAATCGAGGACTGAGAGGGAGGATCTCTGTGTAGCTGGGAGCA  650

seq1  CGTTCTGTTTCCAGAAGGCCTTGAAAAGCTTAATGCAGCCTTGTGAAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCTGTTTCCAGAAGGCCTTGAAAAGCTTAATGCAGCCTTGTGAAGAG  700

seq1  GCAGCATTGGGGTCATGGATGGGGGTGATCAAAATGGACAACTTTATTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCATTGGGGTCATGGATGGGGGTGATCAAAATGGACAACTTTATTTC  750

seq1  CAAGGAATATCTTCGCCTGCTGGGAGCTGGGTTCAAAACCTTACTCTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAATATCTTCGCCTGCTGGGAGCTGGGTTCAAAACCTTACTCTCTG  800

seq1  GTTCCATGCATCTCTCTCCAAGTCCTTCTACCCCCAGACTCCCCGGGTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCATGCATCTCTCTCCAAGTCCTTCTACCCCCAGACTCCCCGGGTGG  850

seq1  TCACCTGCCCTCAACCAACCTCGATGCTCACTGCCCTCCTACCCACCTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTGCCCTCAACCAACCTCGATGCTCACTGCCCTCCTACCCACCTTC  900

seq1  CTGGCTGGAAACGTAATCCAGGCCCTTGTTGTTCCACCAGGACCCTTTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTGGAAACGTAATCCAGGCCCTTGTTGTTCCACCAGGACCCTTTCT  950

seq1  GCCCTCCTCCTCGGGCCCCCACTGAAGCTCAGAGCAGCCGAAGGGGAAAG  1000
      ||||||||||||||||||||||||||||||||||||||   |||||||||
seq2  GCCCTCCTCCTCGGGCCCCCACTGAAGCTCAGAGCAGC--GAGGGGAAAG  998

seq1  AGCTGGCCTCCTCCGCACAACTTCCCAAGAACACGGAGTCCTCCACCCCC  1050
      ||||||| |||||||||| |||||||| ||||   |||||||||||||||
seq2  AGCTGGCTTCCTCCGCAC-ACTTCCCAGGAACCACGAGTCCTCCACCCCC  1047

seq1  ATCTCCGGTTCCCACCTCAGCACACCGCCCCCTCCGCGCTCAGTC  1095
      |||| | ||||||||||||||| ||   ||||||   ||||||||
seq2  ATCTTC-GTTCCCACCTCAGCA-AC--GCCCCTC--GGCTCAGTC  1086