BAC Information

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BAC

Clone NameB6Ng01-203L07
Chromosome6 (Build37)
Map Location 56,305,353 - 56,474,558
singlet/doubletdoublet
Overlap genePde1c
Upstream geneGhrhr, Adcyap1r1, LOC100042219, Neurod6, LOC100041339, Ccdc129, Gsbs, LOC100041357
Downstream geneEG666688, Lsm5, 5830411G16Rik, LOC100042288, Kbtbd2, Fkbp9, Nt5c3, LOC100042327, V1rc21, V1rc19, V1rc20, EG434016, V1rc32, V1rc30, V1rc1, V1rc3, EG626397, V1rc4, V1rc5, V1rc7, V1rc6, LOC100041445, V1r-ps6, V1rc29, V1rc16, V1rc26, V1rc27, EG434017, LOC666822, Ppm1k
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-203L07.bB6Ng01-203L07.g
ACCGA023848GA023849
length1,1571,095
definitionB6Ng01-203L07.b B6Ng01-203L07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,305,353 - 56,306,518)(56,473,463 - 56,474,558)
sequence
gaattctctgcagaaagatgaatgaaagccattatctacgacgttcagct
tcatgttttggttgaattactctcaagctttgtcataattttactatgta
gaaaaacttcacatcgtactcattaaggttcattagtgttgtttaataac
agctgtcaagaagactttaaataaggaacactctccagtaaaagcctgaa
gaatgttaattccttacatagatttactattctttctccacaagtagccc
tccattccctgcagaattcacctttcattacttatcaaatgctggtggtc
acctccaaagttatcacagactgttttatatgcctcaggttaatcaatga
tctatcttctcaaaaggccatggtggagatcttagatgccttctccttcc
ataaagagaaaccaagggaaacatttttctacacacacacacacacacac
acacacacacacacacacacacactcacaaaatatcaagaccgcaaacta
aaactagactatagaaacctctctacttagggctgctgcccaactgaaag
agtcatgtgcaagtcttggtcaaaatactatgcacatagctgccaaatat
tgggctataattagcacaaacaacttatgataagaaccgatgatgtacta
ttaaatagcattagtattcaagtaaagaaagtgcactctaaatgtgaggc
tctagcctcatacttgatacctaccactttctcctctgttatacaggaaa
acttcttttccaagctcttgctgtattagcaagagaagagctgttctgaa
tctggctttagtatcaatagcatttactttccatatggctattgccttct
cttttggtggtggtgttttcaagattttgtatatataagaactttctggg
acggagacaaggtatctgaaacctataatcccagcactttaaaagctgga
acagaagggatcaggagttcaagccagtaccagctacatatcaagttcca
gatcagcctaggctatttggttatctttatttttagttcttttctgatca
tcctaccagtcactttaagtttgtgagcatgcctttccttctgaatatct
tatgcactcataaactgctgcagcggaaccacctcagtaaattgtaatca
ggtagac
gaattcagcatttgttctctctctctctctctctctctctctctctctct
ctcatctgctatcttcatctttatctgcatcatgcttggctaaagctcct
gacttaatccagcttgatttgtactcatgttgccatctggcactgggtca
tgtgccttttcagttagagggaggagaatgagtctattcagaaatgtgaa
cctgtgactggatgccttcatggtgtgttacagccaaatctgcactgcgc
ccagcctttgggtacgtttttaggtaaaaggctttgggggattaactagg
aaacagaattctttcaggaaagtgtcccacaatttcaagggctttgctct
gtctgtaatcattacagtcagcccaaagcatcagggcatgcttacagagg
ctctgtgggcatgttgccgctgagctgtgggtaagaggatgtggctatgg
tattatcagtgaccaatgctgggtgtatttatagcctcatagcactggga
agacagcaatggagttaggagaaagtgcactatagcaggtattagaactg
actgtaaggtttctcaaagtgtggtctgaggaccttctgctgcatcagag
tcgcctgggaaaggaaggtgatttcgattcactatatgctcaggagactg
cacttttaacagcctctcttcctgccattctggtgcatatcattgcttcc
taaaggccatcattttaaagaagaccaacccctggcctcagctcaggcat
ttggcctactggtcttgagtgtctcagttctcattcagagtgcagggctg
agatcactgggctgtgttggaccagtacacgtgtaaactcacaggtcttt
aacaataatttccccattttctatcttgtgcataattcagaaggctgaaa
cttttacattaagcatttaaatcctttattaaatgcttggttataacatt
tatcttgaatatatttaatgattagtggtgctaaggcccctattccttta
ctcttggagttaaggattttccaagacgactctgaaacgcatgcagtgtt
ttgccttcaaagcttatctttagaagcttctctcactccacagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_56305353_56306518
seq2: B6Ng01-203L07.b_44_1200

seq1  GAATTCTCTGCAGAAAGATGAATGAAAGCCATTATCTACGACGTTCAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGCAGAAAGATGAATGAAAGCCATTATCTACGACGTTCAGCT  50

seq1  TCATGTTTTGGTTGAATTACTCTCAAGCTTTGTCATAATTTTACTATGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTTTTGGTTGAATTACTCTCAAGCTTTGTCATAATTTTACTATGTA  100

seq1  GAAAAACTTCACATCGTACTCATTAAGGTTCATTAGTGTTGTTTAATAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAACTTCACATCGTACTCATTAAGGTTCATTAGTGTTGTTTAATAAC  150

seq1  AGCTGTCAAGAAGACTTTAAATAAGGAACACTCTCCAGTAAAAGCCTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTCAAGAAGACTTTAAATAAGGAACACTCTCCAGTAAAAGCCTGAA  200

seq1  GAATGTTAATTCCTTACATAGATTTACTATTCTTTCTCCACAAGTAGCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTTAATTCCTTACATAGATTTACTATTCTTTCTCCACAAGTAGCCC  250

seq1  TCCATTCCCTGCAGAATTCACCTTTCATTACTTATCAAATGCTGGTGGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTCCCTGCAGAATTCACCTTTCATTACTTATCAAATGCTGGTGGTC  300

seq1  ACCTCCAAAGTTATCACAGACTGTTTTATATGCCTCAGGTTAATCAATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCAAAGTTATCACAGACTGTTTTATATGCCTCAGGTTAATCAATGA  350

seq1  TCTATCTTCTCAAAAGGCCATGGTGGAGATCTTAGATGCCTTCTCCTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCTTCTCAAAAGGCCATGGTGGAGATCTTAGATGCCTTCTCCTTCC  400

seq1  ATAAAGAGAAACCAAGGGAAACATTTTTCTACACACACACACACACACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGAGAAACCAAGGGAAACATTTTTCTACACACACACACACACACAC  450

seq1  ACACACACACACACACACACACACTCACAAAATATCAAGACCGCAAACTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACTCACAAAATATCAAGACCGCAAACTA  500

seq1  AAACTAGACTATAGAAACCTCTCTACTTAGGGCTGCTGCCCAACTGAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAGACTATAGAAACCTCTCTACTTAGGGCTGCTGCCCAACTGAAAG  550

seq1  AGTCATGTGCAAGTCTTGGTCAAAATACTATGCACATAGCTGCCAAATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATGTGCAAGTCTTGGTCAAAATACTATGCACATAGCTGCCAAATAT  600

seq1  TGGGCTATAATTAGCACAAACAACTTATGATAAGAACCGATGATGTACTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTATAATTAGCACAAACAACTTATGATAAGAACCGATGATGTACTA  650

seq1  TTAAATAGCATTAGTATTCAAGTAAAGAAAGTGCACTCTAAATGTGAGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATAGCATTAGTATTCAAGTAAAGAAAGTGCACTCTAAATGTGAGGC  700

seq1  TCTAGCCTCATACTTGATACCTACCACTTTCTCCTCTGTTATACAGGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCCTCATACTTGATACCTACCACTTTCTCCTCTGTTATACAGGAAA  750

seq1  ACTTCTTTTCCAAGCTCTTGCTGTATTAGCAAGAGAAGAGCTGTTCTGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTTTTCCAAGCTCTTGCTGTATTAGCAAGAGAAGAGCTGTTCTGAA  800

seq1  TCTGGCTTTAGTATCAATAGCATTTACTTTCCATATGGCTATTGCCTTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCTTTAGTATCAATAGCATTTACTTTCCATATGGCTATTGCCTTCT  850

seq1  CTTTTGGTGGTGGTGTTTTCAAGATTTTGTATATATAAGAACTTTCTGGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGGTGGTGGTGTTTTCAAGATTTTGTATATATAAGAACTTTCTGGG  900

seq1  ACGGAGACAAGGTATCTGAAACCTATAATCCCAGCACTTTAAAAGCTGGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGAGACAAGGTATCTGAAACCTATAATCCCAGCACTTTAAAAGCTGGA  950

seq1  ACAGAA-GGATCAGGAGTTCAAAGCCAGTACCAGCTACATATCAAGTTCC  999
      |||||| ||||||||||||| |||||||||||||||||||||||||||||
seq2  ACAGAAGGGATCAGGAGTTC-AAGCCAGTACCAGCTACATATCAAGTTCC  999

seq1  AGATCAGCCTAGGCTATTTGG-TATCTTTAATTTTTAAGTTC-TTTCTGA  1047
      ||||||||||||||||||||| ||||||||  |||| ||||| |||||||
seq2  AGATCAGCCTAGGCTATTTGGTTATCTTTA--TTTTTAGTTCTTTTCTGA  1047

seq1  TCATCCTAACCAGTCACTTAAGTTTTGTGAAGGCAAGGCTTTCCTTCTG-  1096
      ||||||| ||||||||||| |  |||||||  ||| | ||||||||||| 
seq2  TCATCCT-ACCAGTCACTTTAAGTTTGTGA--GCATGCCTTTCCTTCTGA  1094

seq1  ATATCCTTATGCCACCTTCATAAACTGCTGCAGCGGACACA-CTCAGTAA  1145
      |||| |||||| |||  ||||||||||||||||||||  || ||||||||
seq2  ATAT-CTTATG-CAC--TCATAAACTGCTGCAGCGGAACCACCTCAGTAA  1140

seq1  AAATGTGATAATCAGGTAGAC  1166
      |    |  |||||||||||||
seq2  A----TTGTAATCAGGTAGAC  1157

seq1: chr6_56473463_56474558
seq2: B6Ng01-203L07.g_62_1156 (reverse)

seq1  TTCTGTGGGGGTGAGGAGGAGCTTCTAAAGAT-AGCTTTGAAGGC-AAAC  48
      |||||| || |||| ||| ||||||||||||| |||||||||||| ||||
seq2  TTCTGT-GGAGTGA-GAGAAGCTTCTAAAGATAAGCTTTGAAGGCAAAAC  48

seq1  ACTGCATGTGTTTCAGAGTCGTCTTTGAAAATCCTTTAACT-CAAGTGTA  97
      |||||||| |||||||||||||||| |||||||| |||||| |||| |||
seq2  ACTGCATGCGTTTCAGAGTCGTCTTGGAAAATCC-TTAACTCCAAGAGTA  97

seq1  AA-GAATAGGGGCCTTAGCACCACTTATACAATAAAATATATTCAAGATA  146
      || |||||||||||||||||||||| ||   || ||||||||||||||||
seq2  AAGGAATAGGGGCCTTAGCACCACTAAT--CATTAAATATATTCAAGATA  145

seq1  AATGTTTATAACCAAGCATTTAATAAAGGATTTAAATGCTTAATGT-AAA  195
      |||| ||||||||||||||||||||||||||||||||||||||||| |||
seq2  AATG-TTATAACCAAGCATTTAATAAAGGATTTAAATGCTTAATGTAAAA  194

seq1  GTTTCAGCCTTCTGAATTATGCACAAGATAGAAAATGGGGAAATTATTGT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAGCCTTCTGAATTATGCACAAGATAGAAAATGGGGAAATTATTGT  244

seq1  TAAAGACCTGTGAGTTTACACGTGTACTGGTCCAACACAGCCCAGTGATC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGACCTGTGAGTTTACACGTGTACTGGTCCAACACAGCCCAGTGATC  294

seq1  TCAGCCCTGCACTCTGAATGAGAACTGAGACACTCAAGACCAGTAGGCCA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCCTGCACTCTGAATGAGAACTGAGACACTCAAGACCAGTAGGCCA  344

seq1  AATGCCTGAGCTGAGGCCAGGGGTTGGTCTTCTTTAAAATGATGGCCTTT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCTGAGCTGAGGCCAGGGGTTGGTCTTCTTTAAAATGATGGCCTTT  394

seq1  AGGAAGCAATGATATGCACCAGAATGGCAGGAAGAGAGGCTGTTAAAAGT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGCAATGATATGCACCAGAATGGCAGGAAGAGAGGCTGTTAAAAGT  444

seq1  GCAGTCTCCTGAGCATATAGTGAATCGAAATCACCTTCCTTTCCCAGGCG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCTCCTGAGCATATAGTGAATCGAAATCACCTTCCTTTCCCAGGCG  494

seq1  ACTCTGATGCAGCAGAAGGTCCTCAGACCACACTTTGAGAAACCTTACAG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGATGCAGCAGAAGGTCCTCAGACCACACTTTGAGAAACCTTACAG  544

seq1  TCAGTTCTAATACCTGCTATAGTGCACTTTCTCCTAACTCCATTGCTGTC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTCTAATACCTGCTATAGTGCACTTTCTCCTAACTCCATTGCTGTC  594

seq1  TTCCCAGTGCTATGAGGCTATAAATACACCCAGCATTGGTCACTGATAAT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGTGCTATGAGGCTATAAATACACCCAGCATTGGTCACTGATAAT  644

seq1  ACCATAGCCACATCCTCTTACCCACAGCTCAGCGGCAACATGCCCACAGA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATAGCCACATCCTCTTACCCACAGCTCAGCGGCAACATGCCCACAGA  694

seq1  GCCTCTGTAAGCATGCCCTGATGCTTTGGGCTGACTGTAATGATTACAGA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTGTAAGCATGCCCTGATGCTTTGGGCTGACTGTAATGATTACAGA  744

seq1  CAGAGCAAAGCCCTTGAAATTGTGGGACACTTTCCTGAAAGAATTCTGTT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCAAAGCCCTTGAAATTGTGGGACACTTTCCTGAAAGAATTCTGTT  794

seq1  TCCTAGTTAATCCCCCAAAGCCTTTTACCTAAAAACGTACCCAAAGGCTG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGTTAATCCCCCAAAGCCTTTTACCTAAAAACGTACCCAAAGGCTG  844

seq1  GGCGCAGTGCAGATTTGGCTGTAACACACCATGAAGGCATCCAGTCACAG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGCAGTGCAGATTTGGCTGTAACACACCATGAAGGCATCCAGTCACAG  894

seq1  GTTCACATTTCTGAATAGACTCATTCTCCTCCCTCTAACTGAAAAGGCAC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACATTTCTGAATAGACTCATTCTCCTCCCTCTAACTGAAAAGGCAC  944

seq1  ATGACCCAGTGCCAGATGGCAACATGAGTACAAATCAAGCTGGATTAAGT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCCAGTGCCAGATGGCAACATGAGTACAAATCAAGCTGGATTAAGT  994

seq1  CAGGAGCTTTAGCCAAGCATGATGCAGATAAAGATGAAGATAGCAGATGA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGCTTTAGCCAAGCATGATGCAGATAAAGATGAAGATAGCAGATGA  1044

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACAAATGCTGAATT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACAAATGCTGAATT  1094

seq1  C  1096
      |
seq2  C  1095