BAC Information

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BAC

Clone NameB6Ng01-203O09
Chromosome6 (Build37)
Map Location 76,526,037 - 76,665,429
singlet/doubletdoublet
Overlap genenone
Upstream geneEG668145, EG546907, LOC100042952, LOC668153, EG668155
Downstream geneLOC100042956, Ctnna2, Lrrtm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-203O09.bB6Ng01-203O09.g
ACCGA023991GA023992
length1,191433
definitionB6Ng01-203O09.b B6Ng01-203O09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,664,227 - 76,665,429)(76,526,037 - 76,526,475)
sequence
gaattcacaggtgatgtatatgctgcattctgattactcttgattctttt
tatgttttcttatctccctttcaccatttctttttcctccccatccctta
tctcacattcatctcttttgttttcttctcagcaactcatgtacaatgga
tttgttactatacatttgtgagtggtcagttcatcagtagatacatagaa
gacggtgattgttgcttctgcagaatccatcagtagccagcagatcagca
gggaaggatatggtcctatgagtcccaccatgatttattactgactgtca
acagactcagtcttgtatagcagcagctgctgtgagattgattgcattat
ttgggttatgtattttccaaaagatagcatccacagcccttctccatatc
ttgtagctcttagatgctttctgccccatctccagtgatgtttcttgagg
atctggaagtcttagtatttttcttataatatattatttattattatatt
gttatataacttagggaagtttgacctttcccctcatagttttagtcaag
aggatttagaattgtaagacacagaaattatgagtataatattgaaattc
taaagattaaagtatacaatctgtgctgaaagtaggatcttatactagct
atggatgtttattttgcatagcatgtaggaaaaatattccacatacattc
tatatcaaccttcactacatgtcatttactaagaccctacacaggtccta
acatgtaggaaagtatgtatggtgttatctcattgctagaaaaccaggtg
gacaaaaatgggaaagagagaaagtcagtaaaataagcattctctctcta
tctctgctagtatgtatggtgctgacctgttctaccataaaacttcctcc
ctgtctgttgacttgaaagctcatgaacaagtttgtctcctttgtttctt
ccaggtaatttggaatagcatggaatacatattaccacagctgtttctgt
aatactttagggtgaaatttgtcttcaccccaagaaagaataacttcaag
gaaacaacgagatattagaagacctcgagaatgaaatctttcatgcctca
tggatgccagataataagataaatgcaactttgtctgagcaattctcacc
gaattcaatgcaagtcgcattccaattccaactcaagttct

atatgggcagtcttgcttgtgacctacatctacctgggagaaaaatctca
tgtgtacttgcaaataatatgtaatccctttccatgtgtagagtgcctgt
tggattgattggtttctgcagtgtataagggctattttcctatgaaatca
ctatttgagttttgtttccattatcaaaactggaataagttttaaatatt
atttaataattttggtagtcattctaatgttgccaatatttgactattta
atccctgctgtttacttgtttcatgtttaatatctatatttcattaagac
tcatcatttacattgatctctaatatagtgctctcctttgtatttcttac
aaaacagagcccctagtgtactaagcaatgatgcatgccatgttttaaat
tagtatgtgagtctgtctgcaggtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_76664227_76665429
seq2: B6Ng01-203O09.b_46_1236 (reverse)

seq1  AGAA-TTGAGTTGGAATTTGGATGCAGATTGCATTGAA-TCTGT-AG-AT  46
      |||| ||||||||||||| | ||||   |||||||||| || || || ||
seq2  AGAACTTGAGTTGGAATTGGAATGCGACTTGCATTGAATTCGGTGAGAAT  50

seq1  TGCTTTCAGCAAGATGGCCATTTTTACTTTATTAATCCTGCCAATCCATG  96
      ||||   |  ||| ||  ||  ||||  ||||||   ||| | |||||||
seq2  TGCTCAGACAAAGTTG--CA--TTTATCTTATTA--TCTGGC-ATCCATG  93

seq1  A-GCATGGAAGATTTTTCCATCTTCTGAGGTCTTCTTATATTCTTCTTTT  145
      | ||||| |||||||   |||  || |||||||||| |||    |||  |
seq2  AGGCATGAAAGATTT---CATTCTC-GAGGTCTTCTAATA----TCTCGT  135

seq1  TTTTTTCCTTTAAAGTTATTCTTTCTT-GAGTG-AGACAAA-TTCACCCT  192
      | |||  | || ||||||||||||||| | ||| ||||||| ||||||||
seq2  TGTTT--CCTTGAAGTTATTCTTTCTTGGGGTGAAGACAAATTTCACCCT  183

seq1  AAAGTATTACAGAAACAGCTGTGGTAATTATGTATTCCATTGCTATTCCA  242
      ||||||||||||||||||||||||||| ||||||||||| ||||||||||
seq2  AAAGTATTACAGAAACAGCTGTGGTAA-TATGTATTCCA-TGCTATTCCA  231

seq1  AATTACCTGGAAGAAACAAAGGAGACAAACCTTGTTCATGAGCTTTCAAG  292
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AATTACCTGGAAGAAACAAAGGAGACAAA-CTTGTTCATGAGCTTTCAAG  280

seq1  TCAACAGACAGGGAGGAAGTTTTATGGTAGAACAGGTCAGCACCATACAT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAGACAGGGAGGAAGTTTTATGGTAGAACAGGTCAGCACCATACAT  330

seq1  ACTAGCAGAGATAGAGAGAGAATGCTTATTTTACTGACTTTCTCTCTTTC  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGCAGAGATAGAGAGAGAATGCTTATTTTACTGACTTTCTCTCTTTC  380

seq1  CCATTTTTGTCCACCTGGTTTTCTAGCAATGAGATAACACCATACATACT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTTGTCCACCTGGTTTTCTAGCAATGAGATAACACCATACATACT  430

seq1  TTCCTACATGTTAGGACCTGTGTAGGGTCTTAGTAAATGACATGTAGTGA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTACATGTTAGGACCTGTGTAGGGTCTTAGTAAATGACATGTAGTGA  480

seq1  AGGTTGATATAGAATGTATGTGGAATATTTTTCCTACATGCTATGCAAAA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGATATAGAATGTATGTGGAATATTTTTCCTACATGCTATGCAAAA  530

seq1  TAAACATCCATAGCTAGTATAAGATCCTACTTTCAGCACAGATTGTATAC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACATCCATAGCTAGTATAAGATCCTACTTTCAGCACAGATTGTATAC  580

seq1  TTTAATCTTTAGAATTTCAATATTATACTCATAATTTCTGTGTCTTACAA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATCTTTAGAATTTCAATATTATACTCATAATTTCTGTGTCTTACAA  630

seq1  TTCTAAATCCTCTTGACTAAAACTATGAGGGGAAAGGTCAAACTTCCCTA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAATCCTCTTGACTAAAACTATGAGGGGAAAGGTCAAACTTCCCTA  680

seq1  AGTTATATAACAATATAATAATAAATAATATATTATAAGAAAAATACTAA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATATAACAATATAATAATAAATAATATATTATAAGAAAAATACTAA  730

seq1  GACTTCCAGATCCTCAAGAAACATCACTGGAGATGGGGCAGAAAGCATCT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCCAGATCCTCAAGAAACATCACTGGAGATGGGGCAGAAAGCATCT  780

seq1  AAGAGCTACAAGATATGGAGAAGGGCTGTGGATGCTATCTTTTGGAAAAT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCTACAAGATATGGAGAAGGGCTGTGGATGCTATCTTTTGGAAAAT  830

seq1  ACATAACCCAAATAATGCAATCAATCTCACAGCAGCTGCTGCTATACAAG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAACCCAAATAATGCAATCAATCTCACAGCAGCTGCTGCTATACAAG  880

seq1  ACTGAGTCTGTTGACAGTCAGTAATAAATCATGGTGGGACTCATAGGACC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGTCTGTTGACAGTCAGTAATAAATCATGGTGGGACTCATAGGACC  930

seq1  ATATCCTTCCCTGCTGATCTGCTGGCTACTGATGGATTCTGCAGAAGCAA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCTTCCCTGCTGATCTGCTGGCTACTGATGGATTCTGCAGAAGCAA  980

seq1  CAATCACCGTCTTCTATGTATCTACTGATGAACTGACCACTCACAAATGT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCACCGTCTTCTATGTATCTACTGATGAACTGACCACTCACAAATGT  1030

seq1  ATAGTAACAAATCCATTGTACATGAGTTGCTGAGAAGAAAACAAAAGAGA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAACAAATCCATTGTACATGAGTTGCTGAGAAGAAAACAAAAGAGA  1080

seq1  TGAATGTGAGATAAGGGATGGGGAGGAAAAAGAAATGGTGAAAGGGAGAT  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGTGAGATAAGGGATGGGGAGGAAAAAGAAATGGTGAAAGGGAGAT  1130

seq1  AAGAAAACATAAAAAGAATCAAGAGTAATCAGAATGCAGCATATACATCA  1192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAACATAAAAAGAATCAAGAGTAATCAGAATGCAGCATATACATCA  1180

seq1  CCTGTGAATTC  1203
      |||||||||||
seq2  CCTGTGAATTC  1191


seq1: chr6_76526037_76526475
seq2: B6Ng01-203O09.g_65_503

seq1  GAATTCATATGGGCAGTCTTGCTTGTGACCTACATCTACCTGGGAGAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATGGGCAGTCTTGCTTGTGACCTACATCTACCTGGGAGAAAA  50

seq1  ATCTCATGTGTACTTGCAAATAATATGTAATCCCTTTCCATGTGTAGAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCATGTGTACTTGCAAATAATATGTAATCCCTTTCCATGTGTAGAGT  100

seq1  GCCTGTTGGATTGATTGGTTTCTGCAGTGTATAAGGGCTATTTTCCTATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTTGGATTGATTGGTTTCTGCAGTGTATAAGGGCTATTTTCCTATG  150

seq1  AAATCACTATTTGAGTTTTGTTTCCATTATCAAAACTGGAATAAGTTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCACTATTTGAGTTTTGTTTCCATTATCAAAACTGGAATAAGTTTTA  200

seq1  AATATTATTTAATAATTTTGGTAGTCATTCTAATGTTGCCAATATTTGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTATTTAATAATTTTGGTAGTCATTCTAATGTTGCCAATATTTGAC  250

seq1  TATTTAATCCCTGCTGTTTACTTGTTTCATGTTTAATATCTATATTTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAATCCCTGCTGTTTACTTGTTTCATGTTTAATATCTATATTTCAT  300

seq1  TAAGACTCATCATTTACATTGATCTCTAATATAGTGCTCTCCTTTGTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACTCATCATTTACATTGATCTCTAATATAGTGCTCTCCTTTGTATT  350

seq1  TCTTACAAAACAGAGCCCCTAGTGTACTAAGCAATGATGCATGCCATGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACAAAACAGAGCCCCTAGTGTACTAAGCAATGATGCATGCCATGTT  400

seq1  TTAAATTAGTATGTGAGTCTGTCTGCAGGTGTGTGTGTG  439
      |||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTAGTATGTGAGTCTGTCTGCAGGTGTGTGTGTG  439


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