BAC Information

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BAC

Clone NameB6Ng01-204B15
Chromosome6 (Build37)
Map Location 49,707,285 - 49,907,777
singlet/doubletdoublet
Overlap geneNpy
Upstream geneGimap3, Tmem176b, Tmem176a, EG666105, Abp1, 1600015I10Rik, LOC100040589, Doxl2, Svs1, Gpnmb, LOC666011, Igf2bp3, LOC100040626, Tra2a, Ccdc126, D330028D13Rik, Stk31, LOC384383, LOC666210
Downstream geneLOC100041653, LOC624524, Mpp6, Dfna5h, LOC100041681, Osbpl3, Cycs, 4921507P07Rik, LOC213320, EG666302, EG666308, EG666310, Npvf, LOC100040877
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-204B15.bB6Ng01-204B15.g
ACCGA024140GA024141
length9711,002
definitionB6Ng01-204B15.b B6Ng01-204B15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,707,285 - 49,708,170)(49,906,787 - 49,907,777)
sequence
gaattcatgttttaagtttaaaaaatcaaattaaatctgtgtatgtgtgt
gtgttgtgtgtgtgtgtgtgcacacatgtgtatatgagcatgcgtgtgca
tgaacatttgggcatacgtatggcatggaggatttatggaggtcagaggc
aacattgaagagttggttctctcttcccactatgtggtacctaaacattg
aacccaggtttggttaggtatagcacagtaaatactttttactcagagag
tcatcttgctgctagacccatattcaaaattttttgaattttcccctaca
cactctaaagacattcagtgctcaaaaccaagtctgtatttagataaaaa
tcaaaatagacacatccagccgtacgtgggactgaaatcacacgcccaga
aggttctgcatccagaagcactctgacttggccatgacttggactcctgt
gttctaggtggaaccaggagcaacttcttgcagccatgtagcagtcagac
ctcaggggcaccctagaaggggaggtagggtttcatttcattttgcatga
aagggtgctggtgtgtcatgtacatatctaatttaatactggtaatttta
aaggagcctatttgttttgtttttaaagagttatggcgaaggaagaaagc
tacgtagcttgtgaaaacccctgaaaggaaaaaggatgaaatgatgaggc
atgagaaatcaagccatcctctttaatgaaaataataattttcactcaat
tgaaagtgactcagtaaattcaagactcctctgaagaatttagtgactga
ataacttgaaaataactttgtctatcccaaattgactttaaaataaatta
tgcttaaattttattttagatataataaagaatataattcaccataaaaa
gaaaagaaattaaagttaggtgtgtcacaagggaggcttaatttttacaa
ccagggaaaacctagaaaaat
gaattcaaaagaaattacctgtgtgtctcccaaggtggtggatcctgata
gattccccacttatcccgtgccaccgaggccattaaacagtaaatacaaa
tgaggtcatgtccacttcacacggggcaatgctgagaagctgacgcccac
gccaggagatagcagggctgttatctgtcttagagatttacttgcctcac
tctgcccggattgatccttaacttgatccgtttcagtcctaagccctggg
ttttcaaatgtgccaacttaaatctcttaccgtaaggcaaacgtttcttc
aagctttgtgtcttttaaaaatatggatcaccctctgcggtcgatcttca
tggacgtttatgacaagccagattctggcttcccctcctagtaccacagg
tcaggtagacaattctcccagccttggccatcaaagcgggagccagtgac
aaggtatttatgtcaagtaagcattcatttatgtgattttcacctgccat
gctgattcaccggggaaggctagccagtgagaacaggtctccctccagct
tttaattactgtaggcccaaagatgaatgaccgtccttggggagtaacca
caaaggaccagggtcacaaagggaaatggctgagctgtcagctttcacct
gtggactggataagctgcagggtgagttgcaaagcaaagccactcagctt
ggtcagcagccgagggccgccagcatcagcatttaagctaatgagacaga
gacaaattaaaaccgttttcgggatcaacagctgtccttgggcctctttg
ctcataaactggctttctgttttccagggctacagcaagtacagatctga
aaggtgagggaaatgagatctgactgccagaaaagggccctggggcgggg
cagctgcctccccgctcccacatggtggcacccgagcagaacgacccata
cgcacattccttacatttcataccagtgatgggagaatttggttcaaacg
aa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_49707285_49708170
seq2: B6Ng01-204B15.b_41_953

seq1  GAATTCATGTTTTAAGTTTAAAAAATCAAATTAAATCTGTGTATGTGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTTTTAAGTTTAAAAAATCAAATTAAATCTGTGTATGTGTGT  50

seq1  GTGTTGTGTGTGTGTGTGTGCACACATGTGTATATGAGCATGCGTGTGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGTGTGTGTGTGTGTGCACACATGTGTATATGAGCATGCGTGTGCA  100

seq1  TGAACATTTGGGCATACGTATGGCATGGAGGATTTATGGAGGTCAGAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACATTTGGGCATACGTATGGCATGGAGGATTTATGGAGGTCAGAGGC  150

seq1  AACATTGAAGAGTTGGTTCTCTCTTCCCACTATGTGGTACCTAAACATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTGAAGAGTTGGTTCTCTCTTCCCACTATGTGGTACCTAAACATTG  200

seq1  AACCCAGGTTTGGTTAGGTATAGCACAGTAAATACTTTTTACTCAGAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAGGTTTGGTTAGGTATAGCACAGTAAATACTTTTTACTCAGAGAG  250

seq1  TCATCTTGCTGCTAGACCCATATTCAAAATTTTTTGAATTTTCCCCTACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTTGCTGCTAGACCCATATTCAAAATTTTTTGAATTTTCCCCTACA  300

seq1  CACTCTAAAGACATTCAGTGCTCAAAACCAAGTCTGTATTTAGATAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTAAAGACATTCAGTGCTCAAAACCAAGTCTGTATTTAGATAAAAA  350

seq1  TCAAAATAGACACATCCAGCCGTACGTGGGACTGAAATCACACGCCCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAATAGACACATCCAGCCGTACGTGGGACTGAAATCACACGCCCAGA  400

seq1  AGGTTCTGCATCCAGAAGCACTCTGACTTGGCCATGACTTGGACTCCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCTGCATCCAGAAGCACTCTGACTTGGCCATGACTTGGACTCCTGT  450

seq1  GTTCTAGGTGGAACCAGGAGCAACTTCTTGCAGCCATGTAGCAGTCAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTAGGTGGAACCAGGAGCAACTTCTTGCAGCCATGTAGCAGTCAGAC  500

seq1  CTCAGGGGCACCCTAGAAGGGGAGGTAGGGTTTCATTTCATTTTGCATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGGGCACCCTAGAAGGGGAGGTAGGGTTTCATTTCATTTTGCATGA  550

seq1  AAGGGTGCTGGTGTGTCATGTACATATCTAATTTAATACTGGTAATTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTGCTGGTGTGTCATGTACATATCTAATTTAATACTGGTAATTTTA  600

seq1  AAGGAGCCTATTTGTTT--GTTTTAAAGAGTTATGGCGAAGGAAGAAAGC  648
      |||||||||||||||||   ||||||||||||||||||||||||||||||
seq2  AAGGAGCCTATTTGTTTTGTTTTTAAAGAGTTATGGCGAAGGAAGAAAGC  650

seq1  TACGTAGC-TGTGAAAACCCCTGAA--GGAAAAGGATG-AATGATGAGGC  694
      |||||||| ||||||||||||||||  | ||||||||| |||||||||||
seq2  TACGTAGCTTGTGAAAACCCCTGAAAGGAAAAAGGATGAAATGATGAGGC  700

seq1  ATGAGAAATC-AGCCATCCTC-TTAATGAAAATAATAA-TTTCACTCAA-  740
      |||||||||| |||||||||| |||||||||||||||| |||||||||| 
seq2  ATGAGAAATCAAGCCATCCTCTTTAATGAAAATAATAATTTTCACTCAAT  750

seq1  TGAAAGTGACTCAGTAAA-TCAAGAC-CCTCTGAAGAA-TTAGTGACTGA  787
      |||||||||||||||||| ||||||| ||||||||||| |||||||||||
seq2  TGAAAGTGACTCAGTAAATTCAAGACTCCTCTGAAGAATTTAGTGACTGA  800

seq1  A-AACT--GAAATAACTTAGTCTATCC--AAATGACTTTAAAATAAA-TA  831
      | ||||   ||||||||| ||||||||  || ||||||||||||||| ||
seq2  ATAACTTGAAAATAACTTTGTCTATCCCAAATTGACTTTAAAATAAATTA  850

seq1  TGCTTAA--TTTA-TTTAGATATAA-AAAGAA-ATAATT-ACCAT-AAAA  874
      |||||||  |||| ||||||||||| |||||| |||||| ||||| ||||
seq2  TGCTTAAATTTTATTTTAGATATAATAAAGAATATAATTCACCATAAAAA  900

seq1  GAAAAG-AATTAA  886
      |||||| ||||||
seq2  GAAAAGAAATTAA  913

seq1: chr6_49906787_49907777
seq2: B6Ng01-204B15.g_71_1072 (reverse)

seq1  TTCGTTTGAACC-AATTCT-CCATCACTGTTATG-AATGT-ACGAATGTG  46
      |||||||||||| |||||| ||||||||| |||| ||||| | |||||||
seq2  TTCGTTTGAACCAAATTCTCCCATCACTGGTATGAAATGTAAGGAATGTG  50

seq1  CGTATGTGTCGCTCTGCTCGGGTG-CACCATGTGGGAGCGGGGAGGCAGC  95
      |||||| |||| |||||||||||| |||||||||||||||||||||||||
seq2  CGTATGGGTCGTTCTGCTCGGGTGCCACCATGTGGGAGCGGGGAGGCAGC  100

seq1  TGCCCCG-CCCAGGGCCC-TTTCTGGCAGTCAGATCTCATTTTCCCTCAC  143
      ||||||| |||||||||| |||||||||||||||||||| ||||||||||
seq2  TGCCCCGCCCCAGGGCCCTTTTCTGGCAGTCAGATCTCA-TTTCCCTCAC  149

seq1  CTTTCAGATCTGTACCTGCTGTAGCCCTGGGAAAACAGAAAGCCAG-TTA  192
      ||||||||||||||| |||||||||||| ||||||||||||||||| |||
seq2  CTTTCAGATCTGTACTTGCTGTAGCCCT-GGAAAACAGAAAGCCAGTTTA  198

seq1  TGAGC-AAGAGGCCCAAGGACAGCTGTTGATCCCGAAAACGGTTTTAATT  241
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAAAGAGGCCCAAGGACAGCTGTTGATCCCGAAAACGGTTTTAATT  248

seq1  TGTCTCTGTCTCATTAGCTT-AATGCTGATGCTGGCGGCCCTCGGCTGCT  290
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TGTCTCTGTCTCATTAGCTTAAATGCTGATGCTGGCGGCCCTCGGCTGCT  298

seq1  GACCAAGCTGAGTGGC-TTGCTTTGCAACTCACCCTGCAGCTTATCCAGT  339
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GACCAAGCTGAGTGGCTTTGCTTTGCAACTCACCCTGCAGCTTATCCAGT  348

seq1  CCACAGGTG-AAGCTGACAGCTCAGCCATTTCCCTTTGTGACCCTGGTCC  388
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGGTGAAAGCTGACAGCTCAGCCATTTCCCTTTGTGACCCTGGTCC  398

seq1  TTTGTGGTTACTCCCCAAGGACGGTCATTCATCTTTGGGCCTACAGTAAT  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGGTTACTCCCCAAGGACGGTCATTCATCTTTGGGCCTACAGTAAT  448

seq1  T-AAAGCTGGAGGGAGACCTGTTCTCACTGGCTAGCCTTCCCCGGTGAAT  487
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGCTGGAGGGAGACCTGTTCTCACTGGCTAGCCTTCCCCGGTGAAT  498

seq1  CAGCATGGCAGGTGAAAATCACATAAATGAATGCTTACTTGACATAAATA  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATGGCAGGTGAAAATCACATAAATGAATGCTTACTTGACATAAATA  548

seq1  CCTTGTCACTGGCTCCCGCTTTGATGGCCAAGGCTGGGAGAATTGTCTAC  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTCACTGGCTCCCGCTTTGATGGCCAAGGCTGGGAGAATTGTCTAC  598

seq1  CTGACCTGTGGTACTAGGAGGGGAAGCCAGAATCTGGCTTGTCATAAACG  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCTGTGGTACTAGGAGGGGAAGCCAGAATCTGGCTTGTCATAAACG  648

seq1  TCCATGAAGATCGACCGCAGAGGGTGATCCATATTTTTAAAAGACACAAA  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGAAGATCGACCGCAGAGGGTGATCCATATTTTTAAAAGACACAAA  698

seq1  GCTTGAAGAAACGTTTGCCTTACGGTAAGAGATTTAAGTTGGCACATTTG  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGAAGAAACGTTTGCCTTACGGTAAGAGATTTAAGTTGGCACATTTG  748

seq1  AAAACCCAGGGCTTAGGACTGAAACGGATCAAGTTAAGGATCAATCCGGG  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCCAGGGCTTAGGACTGAAACGGATCAAGTTAAGGATCAATCCGGG  798

seq1  CAGAGTGAGGCAAGTAAATCTCTAAGACAGATAACAGCCCTGCTATCTCC  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTGAGGCAAGTAAATCTCTAAGACAGATAACAGCCCTGCTATCTCC  848

seq1  TGGCGTGGGCGTCAGCTTCTCAGCATTGCCCCGTGTGAAGTGGACATGAC  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGTGGGCGTCAGCTTCTCAGCATTGCCCCGTGTGAAGTGGACATGAC  898

seq1  CTCATTTGTATTTACTGTTTAATGGCCTCGGTGGCACGGGATAAGTGGGG  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTGTATTTACTGTTTAATGGCCTCGGTGGCACGGGATAAGTGGGG  948

seq1  AATCTATCAGGATCCACCACCTTGGGAGACACACAGGTAATTTCTTTTGA  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTATCAGGATCCACCACCTTGGGAGACACACAGGTAATTTCTTTTGA  998

seq1  ATTC  991
      ||||
seq2  ATTC  1002