BAC Information

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BAC

Clone NameB6Ng01-204J01
Chromosome6 (Build37)
Map Location 64,351,644 - 64,555,093
singlet/doubletdoublet
Overlap geneGrid2
Upstream genenone
Downstream geneAtoh1, LOC100041833, LOC667115, Smarcad1, Ptgds2, LOC100042741, LOC100041858, LOC634745, EG667141, C130060K24Rik, 9030611K07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-204J01.bB6Ng01-204J01.g
ACCGA024478GA024479
length1,024882
definitionB6Ng01-204J01.b B6Ng01-204J01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,554,091 - 64,555,093)(64,351,644 - 64,352,520)
sequence
gaattctttatctcaacacctccttttcccgatgctcactgaatagagtt
tgtaatcgaaaaaagagcaaaacagagaagccagatacaatgtgaaactg
tgacctttcatttttacttttaagggtagctagaaataaacacaagagat
gaaggcagctgtgtcagggcgacaggaacgatagcaaagttttcattcaa
ccttctctaagcactatggcagatacactttataaacatggaacaactgt
gcttatttactgttcacaaggaggatgcacattttgaaatgttgactttg
cattgtctacctatcagtttttttttttaaatcatagcatcaatagaggc
tgcaggtaagaggtttttcataccacacatattaaccctaaagatatttt
aacactgacaaaataacaaagaagaattcagatgcaaaaatctaaatctt
agaaaacacaccatcttctctgtccaagtctcagtaggatgaaaatggaa
aaagagccaggggtgccacctattcattgtttttgtatatacatgcaata
tggcaaaaccaatatgcagaggaagaaaagcgttccactttaattagact
tctcaaagcgagagatgggaagagctgcctccaaagcagactgactgaat
agctcgcaggaaaccttttaattacagaagcagataaagctctctgtgaa
gcttccttatgtagttgagaatgaaatcatttccattcttcctaagtggg
gggagaaggggaattagtttctgttctgaccctgaaccgtaatttcatta
atccatgtgtttaaagagaaaaaatgccctgatctcaaatcttcccgttt
cagtgtctggaataaagttctgttgtgtatggacagattgcctggacatt
tgaaccatgatttaaaatctgtattgggaacttgaaaagacattttgtag
gtaaggcttctgtttgaaacctattattgaaggggtaagggagccttgac
ttgctgcatatttcacttatggac

gaattcctatcttttttaattttcttgctaactttctttcctgtgtaaaa
tccaatgaaatatctccctcccacaagtttacacatgtatttaaaacact
gtgcttggtagtttactagagcaccaacctataaattagatggcatttca
gtatggaccatacttttggcaaaaataatatgggaagaacagtgatagaa
atcatcaagattagtgggaatataactcagtgggaatataactggcctag
cataggttcaataactcaaagaaaaacatcagaacctaatgtagctgata
gaagactctactctgagacatagccttgtagaaatcaagtctgaacaaca
ggagtgggccatattgagaaaggatctgtcctgttcccaggttgggaaga
acaactccactcctgcacaagtctccttattactatacttcctgtacgtg
ctatccagttgcagtttagagaatcagttcagtctatcccctcttttttt
gttgttttgtttttggtttttggctttgcaaaggataacaagctggttta
aagttgtagatctccctagctcagccacaggttgtgggaggatttttttt
tatatcagtctaatttatctttctttccctttttaactaaaatagcttta
ttgattccctatctctgtattgtgttcccagactatttactgtctttctt
ctaattttttattgtttttctaaaactaatttactagactatttctactt
tatttactgcctactcctgcatttattacatagtaatcttagtacacatc
atctctgtatgctcctttacttctgaaaattattaaacttgtaaaattaa
cttttaaaaatttgactatgaagtgtatcttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_64554091_64555093
seq2: B6Ng01-204J01.b_48_1071 (reverse)

seq1  GTCCAT-ACTTAAATAT-CAACAAGTCA--GCTCCCTT-CCCCTTCACTA  45
      |||||| | | |||||| || |||||||  |||||||| |||||||| ||
seq2  GTCCATAAGTGAAATATGCAGCAAGTCAAGGCTCCCTTACCCCTTCAATA  50

seq1  ATA-GTTTCCAACAG-AGCCTTACCTACAAAATGTCTTTTC-AGTT-CCA  91
      ||| ||||| ||||| ||||||||||||||||||||||||| |||| |||
seq2  ATAGGTTTCAAACAGAAGCCTTACCTACAAAATGTCTTTTCAAGTTCCCA  100

seq1  ATACAGATTTTATATCATTGTTCAAATGT-CAGGC-ATCTGTCCATACAC  139
      |||||||||||| ||||| |||||||||| ||||| ||||||||||||||
seq2  ATACAGATTTTAAATCATGGTTCAAATGTCCAGGCAATCTGTCCATACAC  150

seq1  AACAGAACTTTA-TCCAGACACTG-AACGGGAAGATTTGAGATCAGGGCA  187
      |||||||||||| ||||||||||| |||||||||||||||||||||||||
seq2  AACAGAACTTTATTCCAGACACTGAAACGGGAAGATTTGAGATCAGGGCA  200

seq1  -TTTTTCTCTTT-AACACAT-GATTAATGAAA-TACGG-TCAGGGTCAGA  232
       ||||||||||| ||||||| ||||||||||| ||||| |||||||||||
seq2  TTTTTTCTCTTTAAACACATGGATTAATGAAATTACGGTTCAGGGTCAGA  250

seq1  ACAG-AACTAATT-CCCTTCTCCCCCCACTTAGGAAGAATGGAAATGA-T  279
      |||| |||||||| |||||||||||||||||||||||||||||||||| |
seq2  ACAGAAACTAATTCCCCTTCTCCCCCCACTTAGGAAGAATGGAAATGATT  300

seq1  TCATTCTCAACTACATAAGGAAGCTTCACAGAGAGCTTTATCTGCTTCTG  329
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTCAACTACATAAGGAAGCTTCACAGAGAGCTTTATCTGCTTCTG  350

seq1  TAATTAAAAGGTTTCCTGCGAGCTATTCAGTCAGTCTGCTTTGGAGGCAG  379
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAAAAGGTTTCCTGCGAGCTATTCAGTCAGTCTGCTTTGGAGGCAG  400

seq1  CTCTTCCCATCTCTCGCTTTGAGAAGTCTAATTAAAGTGGAACGCTTTTC  429
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCCATCTCTCGCTTTGAGAAGTCTAATTAAAGTGGAACGCTTTTC  450

seq1  TTCCTCTGCATATTGGTTTTGCCATATTGCATGTATATACAAAAACAATG  479
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTGCATATTGGTTTTGCCATATTGCATGTATATACAAAAACAATG  500

seq1  AATAGGTGGCACCCCTGGCTCTTTTTCCATTTTCATCCTACTGAGACTTG  529
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGTGGCACCCCTGGCTCTTTTTCCATTTTCATCCTACTGAGACTTG  550

seq1  GACAGAGAAGATGGTGTGTTTTCTAAGATTTAGATTTTTGCATCTGAATT  579
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGAAGATGGTGTGTTTTCTAAGATTTAGATTTTTGCATCTGAATT  600

seq1  CTTCTTTGTTATTTTGTCAGTGTTAAAATATCTTTAGGGTTAATATGTGT  629
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTGTTATTTTGTCAGTGTTAAAATATCTTTAGGGTTAATATGTGT  650

seq1  GGTATGAAAAACCTCTTACCTGCAGCCTCTATTGATGCTATGATTTAAAA  679
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGAAAAACCTCTTACCTGCAGCCTCTATTGATGCTATGATTTAAAA  700

seq1  AAAAAAACTGATAGGTAGACAATGCAAAGTCAACATTTCAAAATGTGCAT  729
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAACTGATAGGTAGACAATGCAAAGTCAACATTTCAAAATGTGCAT  750

seq1  CCTCCTTGTGAACAGTAAATAAGCACAGTTGTTCCATGTTTATAAAGTGT  779
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTTGTGAACAGTAAATAAGCACAGTTGTTCCATGTTTATAAAGTGT  800

seq1  ATCTGCCATAGTGCTTAGAGAAGGTTGAATGAAAACTTTGCTATCGTTCC  829
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCCATAGTGCTTAGAGAAGGTTGAATGAAAACTTTGCTATCGTTCC  850

seq1  TGTCGCCCTGACACAGCTGCCTTCATCTCTTGTGTTTATTTCTAGCTACC  879
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCGCCCTGACACAGCTGCCTTCATCTCTTGTGTTTATTTCTAGCTACC  900

seq1  CTTAAAAGTAAAAATGAAAGGTCACAGTTTCACATTGTATCTGGCTTCTC  929
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAAGTAAAAATGAAAGGTCACAGTTTCACATTGTATCTGGCTTCTC  950

seq1  TGTTTTGCTCTTTTTTCGATTACAAACTCTATTCAGTGAGCATCGGGAAA  979
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGCTCTTTTTTCGATTACAAACTCTATTCAGTGAGCATCGGGAAA  1000

seq1  AGGAGGTGTTGAGATAAAGAATTC  1003
      ||||||||||||||||||||||||
seq2  AGGAGGTGTTGAGATAAAGAATTC  1024


seq1: chr6_64351644_64352520
seq2: B6Ng01-204J01.g_68_949

seq1  GAATTCCTATCTTTTTTAATTTTCTTGCTAACTTTCTTTCCTGTGTAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTATCTTTTTTAATTTTCTTGCTAACTTTCTTTCCTGTGTAAAA  50

seq1  TCCAATGAAATATCTCCCTCCCACAAGTTTACACATGTATTTAAAACACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATGAAATATCTCCCTCCCACAAGTTTACACATGTATTTAAAACACT  100

seq1  GTGCTTGGTAGTTTACTAGAGCACCAACCTATAAATTAGATGGCATTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTGGTAGTTTACTAGAGCACCAACCTATAAATTAGATGGCATTTCA  150

seq1  GTATGGACCATACTTTTGGCAAAAATAATATGGGAAGAACAGTGATAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGGACCATACTTTTGGCAAAAATAATATGGGAAGAACAGTGATAGAA  200

seq1  ATCATCAAGATTAGTGGGAATATAACTCAGTGGGAATATAACTGGCCTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCAAGATTAGTGGGAATATAACTCAGTGGGAATATAACTGGCCTAG  250

seq1  CATAGGTTCAATAACTCAAAGAAAAACATCAGAACCTAATGTAGCTGATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGTTCAATAACTCAAAGAAAAACATCAGAACCTAATGTAGCTGATA  300

seq1  GAAGACTCTACTCTGAGACATAGCCTTGTAGAAATCAAGTCTGAACAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACTCTACTCTGAGACATAGCCTTGTAGAAATCAAGTCTGAACAACA  350

seq1  GGAGTGGGCCATATTGAGAAAGGATCTGTCCTGTTCCCAGGTTGGGAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGGGCCATATTGAGAAAGGATCTGTCCTGTTCCCAGGTTGGGAAGA  400

seq1  ACAACTCCACTCCTGCACAAGTCTCCTTATTACTATACTTCCTGTACGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTCCACTCCTGCACAAGTCTCCTTATTACTATACTTCCTGTACGTG  450

seq1  CTATCCAGTTGCAGTTTAGAGAATCAGTTCAGTCTATCCCCTCTTTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCAGTTGCAGTTTAGAGAATCAGTTCAGTCTATCCCCTCTTTTTTT  500

seq1  GTTGTTTTGTTTTTGGTTTTTGGCTTTGCAAAGGATAACAAGCTGGTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTTTGTTTTTGGTTTTTGGCTTTGCAAAGGATAACAAGCTGGTTTA  550

seq1  AAGTTGTAGATCTCCCTAGCTCAGCCACAGGTTGTGGGAGGATTTTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGTAGATCTCCCTAGCTCAGCCACAGGTTGTGGGAGGATTTTTTTT  600

seq1  TATATCAGTCTAATTTATCTTTCTTTCCCTTTTTAACTAAAATAGCTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCAGTCTAATTTATCTTTCTTTCCCTTTTTAACTAAAATAGCTTTA  650

seq1  TTGATTCCCTATCTCTGTATTGTGTTCCCAGACTATTTACTGTCTTTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTCCCTATCTCTGTATTGTGTTCCCAGACTATTTACTGTCTTTCTT  700

seq1  CTAA-TTTTTATTGTTTTTCTAAAACTAA-TTACTAGACTATTTCTAC-T  747
      |||| |||||||||||||||||||||||| |||||||||||||||||| |
seq2  CTAATTTTTTATTGTTTTTCTAAAACTAATTTACTAGACTATTTCTACTT  750

seq1  TATTTACTGCCTACTCCTGCATTTATTACATAGT-ATCTTAGTACACATC  796
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TATTTACTGCCTACTCCTGCATTTATTACATAGTAATCTTAGTACACATC  800

seq1  ATCTCTGTATGCTCCTTTACTTCTGAAAATTATTAAACTTGTAAAAATAA  846
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ATCTCTGTATGCTCCTTTACTTCTGAAAATTATTAAACTTGTAAAATTAA  850

seq1  CTTTTAAAAA-TTGACTATGAAGTGTATCTTC  877
      |||||||||| |||||||||||||||||||||
seq2  CTTTTAAAAATTTGACTATGAAGTGTATCTTC  882


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