BAC Information

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BAC

Clone NameB6Ng01-204N18
Chromosome14 (Build37)6 (Build37)
Map Location 109,919,112 - 109,920,32246,216,632 - 46,216,790
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG668761, Slitrk1
Downstream geneLOC640892
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-204N18.bB6Ng01-204N18.g
ACCGA024688GA024689
length1,209961
definitionB6Ng01-204N18.b B6Ng01-204N18.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(109,919,112 - 109,920,322)(46,216,632 - 46,216,790)
sequence
gaattctgagcactgaaactctacagcaacactaaacactcctctatttg
gatatttctattagataacttagtcacagacacacacacacacactcaca
ctcacacacacacactcacacacacacacatacaaacaagcacaaacaca
gagaggggggtgtaaagtaaagctgacctttaaagaaatagtagaaagag
tcactgtttttctcgtaccttcaggataagtcaagaaatgaagaagaaaa
atgtcgtgtatcatgagctaagaagaagaaactgagagtctaaagaataa
aaaaaaaaacattcaaacactcataatataaaccagtgctgtgaaaagtt
tataagacaaacagattacagttcagctttatttatgtttttttgttttg
tttcgttttttgtttgtttgtttgtttgttttaatttgtgccagggttcc
attatgtagtctagattggcttcaaattcaaattgctccagattgagact
tgcaagtacagggactatagaaataggtcatcatacttagctgatagtct
gcatagatatgagctcttatgagatgtgaccactggtataattttttttt
aacattagtacgtttcatcaaaaaaagtaagtaaaggccgagcaatggta
ctctagacagtattaaaacaaataaacaaaccataacaaagctgctgttc
agaacatgaagagtgttttcaagagagaaatttgggcaataaatcttata
gtgtcagagaaagaatgtgcacataaaagactaaaatctagcatctgggg
agaattgaaaatacttggcacaatgagactcttaggctcataaacagaaa
ctgggcacagaatactgggtgagattttatgtcttccactgaagtgaaat
aaaacaagctgatatgagaatgtgcaaacaggtaagtgcaattcagaaat
cttagctacatatcatttttctttgaaaagtagtgaaaatattacaacaa
caacacaaactttacaatattttagtggttcctaaaatgcatggaatgaa
actatgctggtttcttactgattgtagttttttcttttcataatatttta
ttgggatgaaattcaagtcaatgggaataatgaaatcactgtctggaacc
aactggggaaattctattgcaccagggaatataaaataatgtgttctccc
agaatgaat

gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacactagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcctggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaagttcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtattcactgataagtggatattagccccaaacc
taggatacccaagatataagatataattagttaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgcccctccttagatttgggaa
caaaacacccatggaaggagttacagagccaaagtttggagctgagatga
aaggatggaccatgtggagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttattgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagccaaa
cacagaagtggatgttcacagtcagctaatggatgggatcatagggctcc
caattggagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_109919112_109920322
seq2: B6Ng01-204N18.b_46_1254

seq1  GAATTCTGAGCACTGAAACTCTACAGCAACACTAAACACTCCTCTATTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAGCACTGAAACTCTACAGCAACACTAAACACTCCTCTATTTG  50

seq1  GATATTTCTATTAGATAACTTAGTCACAGACACACACACACACACTCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTTCTATTAGATAACTTAGTCACAGACACACACACACACACTCACA  100

seq1  CTCACACACACACACTCACACACACACACATACAAACAAGCACAAACACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACACACACACACTCACACACACACACATACAAACAAGCACAAACACA  150

seq1  GAGAGGGGGGTGTAAAGTAAAGCTGACCTTTAAAGAAATAGTAGAAAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGGGGGTGTAAAGTAAAGCTGACCTTTAAAGAAATAGTAGAAAGAG  200

seq1  TCACTGTTTTTCTCGTACCTTCAGGATAAGTCAAGAAATGAAGAAGAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGTTTTTCTCGTACCTTCAGGATAAGTCAAGAAATGAAGAAGAAAA  250

seq1  ATGTCGTGTATCATGAGCTAAGAAGAAGAAACTGAGAGTCTAAAGAATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCGTGTATCATGAGCTAAGAAGAAGAAACTGAGAGTCTAAAGAATAA  300

seq1  AAAAAAAAACATTCAAACACTCATAATATAAACCAGTGCTGTGAAAAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAACATTCAAACACTCATAATATAAACCAGTGCTGTGAAAAGTT  350

seq1  TATAAGACAAACAGATTACAGTTCAGCTTTATTTATGTTTTTTTGTTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGACAAACAGATTACAGTTCAGCTTTATTTATGTTTTTTTGTTTTG  400

seq1  TTTCGTTTTTTGTTTGTTTGTTTGTTTGTTTTAATTTGTGCCAGGGTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCGTTTTTTGTTTGTTTGTTTGTTTGTTTTAATTTGTGCCAGGGTTCC  450

seq1  ATTATGTAGTCTAGATTGGCTTCAAATTCAAATTGCTCCAGATTGAGACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGTAGTCTAGATTGGCTTCAAATTCAAATTGCTCCAGATTGAGACT  500

seq1  TGCAAGTACAGGGACTATAGAAATAGGTCATCATACTTAGCTGATAGTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGTACAGGGACTATAGAAATAGGTCATCATACTTAGCTGATAGTCT  550

seq1  GCATAGATATGAGCTCTTATGAGATGTGACCACTGGTATAATTTTTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGATATGAGCTCTTATGAGATGTGACCACTGGTATAATTTTTTTTT  600

seq1  AACATTAGTACGTTTCATCAAAAAAAGTAAGTAAAGGCCGAGCAATGGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTAGTACGTTTCATCAAAAAAAGTAAGTAAAGGCCGAGCAATGGTA  650

seq1  CTCTAGACAGTATTAAAACAAATAAACAAACCATAACAAAGCTGCTGTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGACAGTATTAAAACAAATAAACAAACCATAACAAAGCTGCTGTTC  700

seq1  AGAACATGAAAGAGTGTTTTCAAGAGAGAAATTTGGGCAATAAATCTTAT  750
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AGAACATG-AAGAGTGTTTTCAAGAGAGAAATTTGGGCAATAAATCTTAT  749

seq1  AGTGTCAGAGAAAGAATGTGCACATAAAAGACTAAAATCTAGCATCTGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCAGAGAAAGAATGTGCACATAAAAGACTAAAATCTAGCATCTGGG  799

seq1  GAGAATTGAAAATACTTGGCACAATGAGACTCTTAGGCTCATAAACAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATTGAAAATACTTGGCACAATGAGACTCTTAGGCTCATAAACAGAA  849

seq1  ACTGGGCACAGAATACTGGGTGAGATTTTATGTCTTCCACTGAAGTGAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGCACAGAATACTGGGTGAGATTTTATGTCTTCCACTGAAGTGAAA  899

seq1  TAAAACAAGCTGATATGAGAATGTGCAAACAGGTAAGTGCAATTCAGAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACAAGCTGATATGAGAATGTGCAAACAGGTAAGTGCAATTCAGAAA  949

seq1  TCTTAGCTACATATCATTTTTTCTTTGAAAAGTAAGTGAAAATAATTACA  1000
      |||||||||||||||| |||||||||||||||| ||||||||| ||||||
seq2  TCTTAGCTACATATCA-TTTTTCTTTGAAAAGT-AGTGAAAAT-ATTACA  996

seq1  ACAACAACAACAAACTTTACAAATATTTTAGTGGGTTTCCTAAAATGCAT  1050
      |||||||| ||||||||||| |||||||||||||  ||||||||||||||
seq2  ACAACAAC-ACAAACTTTAC-AATATTTTAGTGG--TTCCTAAAATGCAT  1042

seq1  GGAATGAAACTATGCTGGTTTCTTACTGATTGTTAGTTTTTCTTTTCAAT  1100
      |||||||||||||||||||||||||||||||||   ||||||||||||  
seq2  GGAATGAAACTATGCTGGTTTCTTACTGATTGTAGTTTTTTCTTTTCA--  1090

seq1  AAATATTTTATT-GGATGAAATATCAGGTCAATGGGATTAAATGATATCA  1149
       ||||||||||| ||||||||| ||| |||||||||| | ||||| ||| 
seq2  TAATATTTTATTGGGATGAAAT-TCAAGTCAATGGGAAT-AATGAAATC-  1137

seq1  ACTGTCTG--AACAAATGGGGAA--TCTATTG-ACCAAGGAATA-AAAAT  1193
      ||||||||  | ||| |||||||  ||||||| |||| |||||| |||||
seq2  ACTGTCTGGAACCAACTGGGGAAATTCTATTGCACCAGGGAATATAAAAT  1187

seq1  A---TGTT-TTCAAGAATGAAT  1211
      |   |||| | | |||||||||
seq2  AATGTGTTCTCCCAGAATGAAT  1209


seq1: chr6_46216632_46216790
seq2: B6Ng01-204N18.g_700_861 (reverse)

seq1  GGTGGATCCCTGGATATGGCAGTCTCTACATGGTCCATCCTTTCGTCTCA  50
      |||||||||||||||||||||||||| ||||||||||||||||| |||||
seq2  GGTGGATCCCTGGATATGGCAGTCTCCACATGGTCCATCCTTTCATCTCA  50

seq1  GCTCCAAACTTTGTCTCTGTAACTCCTTCCATGGGTGTTTTGTTCCCAAT  100
      ||||||||||||| ||||||||||||||||||||||||||||||||||| 
seq2  GCTCCAAACTTTGGCTCTGTAACTCCTTCCATGGGTGTTTTGTTCCCAAA  100

seq1  TCTAAGGAGGGGTATAGTGTCCACACTTCAGTCTTCATTCTTCTTGAGTT  150
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TCTAAGGAGGGGCATAGTGTCCACACTTCAGTCTTCATTCTTCTTGAGTT  150

seq1  TCAT---TTTAA  159
      ||||   |||||
seq2  TCATGTGTTTAA  162


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