BAC Information

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BAC

Clone NameB6Ng01-204P16
Chromosome6 (Build37)
Map Location 83,507,042 - 83,667,544
singlet/doubletdoublet
Overlap geneStambp, LOC664956, Clec4f, Cd207, Vax2os2, Vax2os1, Vax2
Upstream geneTacr1, Pole4, LOC100043412, Hk2, EG622318, Sema4f, D6Mm5e, Dok1, Loxl3, Htra2, Aup1, Dqx1, Tlx2, Pcgf1, Lbx2, A230058J24Rik, Mrpl53, Gcs1, Wbp1, Znhit4, Rtkn, Wdr54, 1700003E16Rik, Dctn1, C330016K18Rik, Mthfd2, Mobk1b, Bola3, D230004J03Rik, Dguok, Actg2
Downstream geneAtp6v1b1, 1700124L16Rik, Ankrd53, Tex261, LOC665004, Nagk, Paip2b, LOC384450, LOC622683, LOC380687, LOC665098, LOC676366, Zfml, Dysf, LOC665114, 4930504D19Rik, Cyp26b1, Exoc6b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-204P16.bB6Ng01-204P16.g
ACCGA024780GA024781
length795935
definitionB6Ng01-204P16.b B6Ng01-204P16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,666,755 - 83,667,544)(83,507,042 - 83,507,961)
sequence
gaattcatttcactgtatttacactaaatcagaccaagtgcaggtccttc
ccaccctacataattagcttactcaatggtcaaaggacacagagctgttg
gaactgcaaatgcccaagacagttaaaaaatttcaccgatgactttcaaa
atagcctgaggaaagtgcgtggaagggcaaggaggaggcttctggctttc
ttccccctccggttctgccttcctgtgaagtgtgtattcggaaatgaaag
cctgctaggccatgaagctgagtacggcctgcccaagctggaccttgagg
acaggatcctccctgcagctccagagtcggtgaggccaagcctccaggga
aagagggagcaactctttttctaagacatcgcatcttatgggtgcatggg
tggggtgcatgcagacttagctagtggtttcagctaggtcgttcttagat
ttttgttgttgttgttgttttgatttttgttttacttttgtttttggtag
acttggaggctgaccttgaagctgaggtaatcttcctgtctctacctcct
atagcctgctggcattaccaacccagccactactctggtcagccagtttt
ggttatttttgctggtcgagcctcgtagaagcgtccgctgtggctctgca
cttcctaagaccttgcaatagactcctatgctttcacagcgctccctccc
caactctctgtctctgtctcccgccccccccccctccatccccctcttgc
acaggcacacagatgcacaggaaaaaaaaatttaaggtttgtcca
gaattcactatgcagctgacctcaaatctgtggaaagtcttctgtctcag
attctcagggggtgggattacaggcatgaggtatcattcctgacctgtat
gtattacagttgtatactcatgcatgtgtaggtcagagaaaaactgtgtg
tgttgttcttcacattcaattaatgtgtttttgtgatgagacctcttatt
ggcccaagacttgtcaggtaggctgcctgtctggctttgtaaacttcagg
gatctgccttccattgcccctgggatcatgccatgcactctctgtggagg
gattggtatagagtcagactccagatacccagtcatgggaaaggccacag
aggaagcagccccagttcagggaagttacacccgcttaccagttttccac
agaggactccacaggtttcaatgcctttggcggtattggcactggcaagc
tggagaaattctgagcacagattacggggcaccacgatgtggcgcaggcc
ttcaatggtgggaactgaaatgggcaagagggaagagttggagtccgcag
ggccagggatccctgagcagcagctggagctgacagactgagactgtctc
cagcgacggctgcagctggaggactgagcctggcagagctgagtcccagg
gtttccgggctccgtagggatcagccatccctctcctgcctatttctccc
tttggaatagtgttatctttactctgcctctctgccagaagtgtggatta
cttgagtgccacacacttcacagctgggagaaggatgaatgcctcgttct
agagcagatcttagataggagctctgcatttgtgttttaagatcctgatt
ccttcaagaagagaagatttttaccattcaaggtaagataagggctcacc
ttactattcttccaaaagttgttttttgaagagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_83666755_83667544
seq2: B6Ng01-204P16.b_45_839 (reverse)

seq1  TGGAC-AACCTTAA--TTTTTTTTCCTGTGCATCTGTGTGCCTGTGCAAG  47
      ||||| ||||||||  ||||||||||||||||||||||||||||||||||
seq2  TGGACAAACCTTAAATTTTTTTTTCCTGTGCATCTGTGTGCCTGTGCAAG  50

seq1  A-GGGGATGGA-GGGGGGGGGGCGGGAGACAGAGACAGAGAGTTGGGGAG  95
      | ||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGATGGAGGGGGGGGGGGCGGGAGACAGAGACAGAGAGTTGGGGAG  100

seq1  GGAGCGCTGTGAAAGCATAGGAGTCTATTGCAAGGTCTTAGGAAGTGCAG  145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCGCTGTGAAAGCATAGGAGTCTATTGCAAGGTCTTAGGAAGTGCAG  150

seq1  AGCCACAGCGGACGCTTCTACGAGGCTCGACCAGCAAAAATAACCAAAAC  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACAGCGGACGCTTCTACGAGGCTCGACCAGCAAAAATAACCAAAAC  200

seq1  TGGCTGACCAGAGTAGTGGCTGGGTTGGTAATGCCAGCAGGCTATAGGAG  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGACCAGAGTAGTGGCTGGGTTGGTAATGCCAGCAGGCTATAGGAG  250

seq1  GTAGAGACAGGAAGATTACCTCAGCTTCAAGGTCAGCCTCCAAGTCTACC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGACAGGAAGATTACCTCAGCTTCAAGGTCAGCCTCCAAGTCTACC  300

seq1  AAAAACAAAAGTAAAACAAAAATCAAAACAACAACAACAACAAAAATCTA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAAAGTAAAACAAAAATCAAAACAACAACAACAACAAAAATCTA  350

seq1  AGAACGACCTAGCTGAAACCACTAGCTAAGTCTGCATGCACCCCACCCAT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACGACCTAGCTGAAACCACTAGCTAAGTCTGCATGCACCCCACCCAT  400

seq1  GCACCCATAAGATGCGATGTCTTAGAAAAAGAGTTGCTCCCTCTTTCCCT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCCATAAGATGCGATGTCTTAGAAAAAGAGTTGCTCCCTCTTTCCCT  450

seq1  GGAGGCTTGGCCTCACCGACTCTGGAGCTGCAGGGAGGATCCTGTCCTCA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCTTGGCCTCACCGACTCTGGAGCTGCAGGGAGGATCCTGTCCTCA  500

seq1  AGGTCCAGCTTGGGCAGGCCGTACTCAGCTTCATGGCCTAGCAGGCTTTC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCAGCTTGGGCAGGCCGTACTCAGCTTCATGGCCTAGCAGGCTTTC  550

seq1  ATTTCCGAATACACACTTCACAGGAAGGCAGAACCGGAGGGGGAAGAAAG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCGAATACACACTTCACAGGAAGGCAGAACCGGAGGGGGAAGAAAG  600

seq1  CCAGAAGCCTCCTCCTTGCCCTTCCACGCACTTTCCTCAGGCTATTTTGA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGCCTCCTCCTTGCCCTTCCACGCACTTTCCTCAGGCTATTTTGA  650

seq1  AAGTCATCGGTGAAATTTTTTAACTGTCTTGGGCATTTGCAGTTCCAACA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCATCGGTGAAATTTTTTAACTGTCTTGGGCATTTGCAGTTCCAACA  700

seq1  GCTCTGTGTCCTTTGACCATTGAGTAAGCTAATTATGTAGGGTGGGAAGG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGTGTCCTTTGACCATTGAGTAAGCTAATTATGTAGGGTGGGAAGG  750

seq1  ACCTGCACTTGGTCTGATTTAGTGTAAATACAGTGAAATGAATTC  790
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCACTTGGTCTGATTTAGTGTAAATACAGTGAAATGAATTC  795

seq1: chr6_83507042_83507961
seq2: B6Ng01-204P16.g_66_1000

seq1  GAATTCACTATGCAGCTGACCTCAAATCTGTGGAAAGTCTTCTGTCTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTATGCAGCTGACCTCAAATCTGTGGAAAGTCTTCTGTCTCAG  50

seq1  ATTCTCAGGGGGTGGGATTACAGGCATGAGGTATCATTCCTGACCTGTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCAGGGGGTGGGATTACAGGCATGAGGTATCATTCCTGACCTGTAT  100

seq1  GTATTACAGTTGTATACTCATGCATGTGTAGGTCAGAGAAAAACTGTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTACAGTTGTATACTCATGCATGTGTAGGTCAGAGAAAAACTGTGTG  150

seq1  TGTTGTTCTTCACATTCAATTAATGTGTTTTTGTGATGAGACCTCTTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTCTTCACATTCAATTAATGTGTTTTTGTGATGAGACCTCTTATT  200

seq1  GGCCCAAGACTTGTCAGGTAGGCTGCCTGTCTGGCTTTGTAAACTTCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCAAGACTTGTCAGGTAGGCTGCCTGTCTGGCTTTGTAAACTTCAGG  250

seq1  GATCTGCCTTCCATTGCCCCTGGGATCATGCCATGCACTCTCTGTGGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGCCTTCCATTGCCCCTGGGATCATGCCATGCACTCTCTGTGGAGG  300

seq1  GATTGGTATAGAGTCAGACTCCAGATACCCAGTCATGGGAAAGGCCACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGGTATAGAGTCAGACTCCAGATACCCAGTCATGGGAAAGGCCACAG  350

seq1  AGGAAGCAGCCCCAGTTCAGGGAAGTTACACCCGCTTACCAGTTTTCCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGCAGCCCCAGTTCAGGGAAGTTACACCCGCTTACCAGTTTTCCAC  400

seq1  AGAGGACTCCACAGGTTTCAATGCCTTTGGCGGTATTGGCACTGGCAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGACTCCACAGGTTTCAATGCCTTTGGCGGTATTGGCACTGGCAAGC  450

seq1  TGGAGAAATTCTGAGCACAGATTACGGGGCACCACGATGTGGCGCAGGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAAATTCTGAGCACAGATTACGGGGCACCACGATGTGGCGCAGGCC  500

seq1  TTCAATGGTGGGAACTGAAATGGGCAAGAGGGAAGAGTTGGAGTCCGCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATGGTGGGAACTGAAATGGGCAAGAGGGAAGAGTTGGAGTCCGCAG  550

seq1  GGCCAGGGATCCCTGAGCAGCAGCTGGAGCTGACAGACTGAGACTGTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGGGATCCCTGAGCAGCAGCTGGAGCTGACAGACTGAGACTGTCTC  600

seq1  CAGCGACGGCTGCAGCTGGAGGACTGAGCCTGGCAGAGCTGAGTCCCAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGACGGCTGCAGCTGGAGGACTGAGCCTGGCAGAGCTGAGTCCCAGG  650

seq1  G-TTCCGGGCTCCGTAGGGATCAGCCATCCCTCTCCTGCCTATTTCTCCC  699
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCGGGCTCCGTAGGGATCAGCCATCCCTCTCCTGCCTATTTCTCCC  700

seq1  TTTGGAATAGTGTTATC-TTACTCTGCCTCTCTGCCAGAAGTGTGGATTA  748
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTTGGAATAGTGTTATCTTTACTCTGCCTCTCTGCCAGAAGTGTGGATTA  750

seq1  C-TGAGTG-CACACAC-TCACAGCT-GGAGAAGGATGAATGCCTCG-TCT  793
      | |||||| ||||||| |||||||| |||||||||||||||||||| |||
seq2  CTTGAGTGCCACACACTTCACAGCTGGGAGAAGGATGAATGCCTCGTTCT  800

seq1  AGAGCAGATC-TAGATA-GAGCTCTGCATTTGTGTTTTAAGATCCTGA-T  840
      |||||||||| |||||| |||||||||||||||||||||||||||||| |
seq2  AGAGCAGATCTTAGATAGGAGCTCTGCATTTGTGTTTTAAGATCCTGATT  850

seq1  CCTTCAAGAAGAGAAGATTTTAACCATTCAAGGTAAGAT-AGGGCTCACC  889
      ||||||||||||||||||||| ||||||||||||||||| ||||||||||
seq2  CCTTCAAGAAGAGAAGATTTTTACCATTCAAGGTAAGATAAGGGCTCACC  900

seq1  -TACTA-TCTTCCAAAAGT--GTTTTTGAAGAGTG  920
       ||||| ||||||||||||   |||||||||||||
seq2  TTACTATTCTTCCAAAAGTTGTTTTTTGAAGAGTG  935