BAC Information

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BAC

Clone NameB6Ng01-205D14
Chromosome6 (Build37)
Map Location 11,385,846 - 11,508,853
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040285, LOC667650, AA545190
Downstream geneNdufa4, Phf14, LOC100040844, EG625347, LOC435879, Thsd7a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-205D14.bB6Ng01-205D14.g
ACCGA024964GA024965
length1,1971,117
definitionB6Ng01-205D14.b B6Ng01-205D14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,385,846 - 11,387,055)(11,507,733 - 11,508,853)
sequence
gaattcaatattatttgcaatgcattccaacaaaacagtttttgatacaa
atgtaggaagtgttttgaattacccatcacaaagtaaagactatttctac
ttcatcatgtgttcttcttcagaaccactcttcaatactggattgctaaa
aaccatgacttcattgtcctgagataggtaataatggtaaaaaaaaaaat
tcaatatttattctcttatattaggtaacagcacttaggatacagtcaaa
ataaaaaataaaaatcagtgaataggttggaagttatttgctgccctcac
tcttagattctaatagcaaaagaaagataaggaaaaaaaatcaaatgtag
tgaatgtatcagtggagtcactttgattctcatgagttctatgaaaaatg
gaaatattgtgatagaaatgttaatgaggccaagatgtctttcaaagtcg
gttagagaagcactatgcaaaacaaagaggttttaagacattagccctat
gaaggacatgggaacactttctttaagtcaaatacaacagacaaaagaaa
aacacgtgtccatttgttctgactccattgttccctttgtttctcctgca
cacagcttcctctataggtcatttacctgttcaattccatcttcatttca
acttgagttcctgtcaatattcctatcaccttactaaattcagtttttaa
atcctgaattatcttcatcaaataagccagccatatatatttgtccttct
tttgcattaatcaaacatttattgttatttttttacatgtactctgctgt
tcattcatactttccttaaattacttggattctttgagaggctgtaagtt
ggactattcctgggaagcctactatagagatcgacattgcatacaattac
aggtaatattaaaagctctataacttgccagatgtcattctgtatgtgca
gttattgttcacatttgcatcttcagaaaattcataagtttctggagttt
cctcatctcacatgtcagagaactaagagtgtcagacacccaggtcatta
gcagcactctgtacaatatgtcaccacattctgtcaggtgtaaaatgtcg
attccatcatggtgtggcaaatcaataccctctcaagaataaattcccta
tggcatacaatagaatacaatgacaatatcacctgataaaatttgtg

gaattcaccccctccaaagtcaatttcctttttaaggataggtagcaagt
caagcacttgaggaagggattttagaatgtactgtttggggatatcaatt
gagataaattaaggactaaagataattctggtgtcaaactggcacatcaa
agcagtagttaagtgaaggagaaatatgaaaacatcagattctataaagt
caacataacaacagtaagtaaaacacactgatactaactttaattattaa
tggtatcaattcaccaatggaaacacagagtatcaaattggactaaaaac
aaaaaacaaaacaaacaaaacagaactcatttttttttgttgagaccaag
aaatatatatcaccatcaaaacaaccacaaccatagcatgaaaggatagg
gaaatgtatttgaaggaaatgaaactggaaaccaaacagatatcatttct
ctaatatcattgaaaatttatttcaagctgaagttattcagaaaatacaa
agaaaattattccacaccgactaagagaacaaaccataggaagatattgt
gattttaaacagataaagactaaacattgatgcaaccacattcatattaa
aacactgctggatataaagacagattagctccaacataatgataatgagg
gacttccgtactctaaaataacaaatagatatttcaccaaaacaaaataa
gcaagcaaaagatgaatatctgcgttaaatattattgtagatcaagtgga
cctaacagtcatctctagcactgcagaatatacattcagctcagaagccc
gttgaactttctctacattcaactatataacaggataaagcaaagtttat
tcaactacaggagttttgacatatttatctgatcacagcagagtaaaata
agaagcaaacaatagagagagattctatagggacatacacaaaatcatgg
agaatgaataacatattaaatgattaactgggtcattgaaaaaaatgaag
aaggaaataagcaaaatttcttagaactgaggaaaagaggcagaacatac
aacttatgggataagtggaaaccttaggtcttggaaatgaaaaatgagta
atctcaggtagatctaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_11385846_11387055
seq2: B6Ng01-205D14.b_44_1240

seq1  GAATTCAATATTATTTGCAATGCATTCCAACAAAACAGTTTTTGATACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATATTATTTGCAATGCATTCCAACAAAACAGTTTTTGATACAA  50

seq1  ATGTAGGAAGTGTTTTGAATTACCCATCACAAAGTAAAGACTATTTCTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGGAAGTGTTTTGAATTACCCATCACAAAGTAAAGACTATTTCTAC  100

seq1  TTCATCATGTGTTCTTCTTCAGAACCACTCTTCAATACTGGATTGCTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCATGTGTTCTTCTTCAGAACCACTCTTCAATACTGGATTGCTAAA  150

seq1  AACCATGACTTCATTGTCCTGAGATAGGTAATAATGGTAAAAAAAAAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATGACTTCATTGTCCTGAGATAGGTAATAATGGTAAAAAAAAAAAT  200

seq1  TCAATATTTATTCTCTTATATTAGGTAACAGCACTTAGGATACAGTCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATATTTATTCTCTTATATTAGGTAACAGCACTTAGGATACAGTCAAA  250

seq1  ATAAAAAATAAAAATCAGTGAATAGGTTGGAAGTTATTTGCTGCCCTCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAATAAAAATCAGTGAATAGGTTGGAAGTTATTTGCTGCCCTCAC  300

seq1  TCTTAGATTCTAATAGCAAAAGAAAGATAAGGAAAAAAAATCAAATGTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGATTCTAATAGCAAAAGAAAGATAAGGAAAAAAAATCAAATGTAG  350

seq1  TGAATGTATCAGTGGAGTCACTTTGATTCTCATGAGTTCTATGAAAAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGTATCAGTGGAGTCACTTTGATTCTCATGAGTTCTATGAAAAATG  400

seq1  GAAATATTGTGATAGAAATGTTAATGAGGCCAAGATGTCTTTCAAAGTCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATTGTGATAGAAATGTTAATGAGGCCAAGATGTCTTTCAAAGTCG  450

seq1  GTTAGAGAAGCACTATGCAAAACAAAGAGGTTTTAAGACATTAGCCCTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGAGAAGCACTATGCAAAACAAAGAGGTTTTAAGACATTAGCCCTAT  500

seq1  GAAGGACATGGGAACACTTTCTTTAAGTCAAATACAACAGACAAAAGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGACATGGGAACACTTTCTTTAAGTCAAATACAACAGACAAAAGAAA  550

seq1  AACACGTGTCCATTTGTTCTGACTCCATTGTTCCCTTTGTTTCTCCTGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACGTGTCCATTTGTTCTGACTCCATTGTTCCCTTTGTTTCTCCTGCA  600

seq1  CACAGCTTCCTCTATAGGTCATTTACCTGTTCAATTCCATCTTCATTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCTTCCTCTATAGGTCATTTACCTGTTCAATTCCATCTTCATTTCA  650

seq1  ACTTGAGTTCCTGTCAATATTCCTATCACCTTACTAAATTCAGTTTTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAGTTCCTGTCAATATTCCTATCACCTTACTAAATTCAGTTTTTAA  700

seq1  ATCCTGAATTATCTTCATCAAATAAGCCAGCCATATATATTTGTCCTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGAATTATCTTCATCAAATAAGCCAGCCATATATATTTGTCCTTCT  750

seq1  TTTGCATTAATCAAACATTTATTGTTATTTTTTTACATGTACTCTGCTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCATTAATCAAACATTTATTGTTATTTTTTTACATGTACTCTGCTGT  800

seq1  TCATTCATACTTTCCTTAAATTACTTGGATTCTTTGAGAGGCTGTAAGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCATACTTTCCTTAAATTACTTGGATTCTTTGAGAGGCTGTAAGTT  850

seq1  GGACTATTCCTGGGAAGCCTACTATAGAGATCGACATTGCATACAATTAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTATTCCTGGGAAGCCTACTATAGAGATCGACATTGCATACAATTAC  900

seq1  AGGTAATATTAAAAGCTCTATAACTTGCCAGATGTCATTCTGTATGTGCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAATATTAAAAGCTCTATAACTTGCCAGATGTCATTCTGTATGTGCA  950

seq1  GTTATTGTTCACATTTGCATCTTCAGAAAATTCATAAGTTTCTGGAGTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTGTTCACATTTGCATCTTCAGAAAATTCATAAGTTTCTGGAGTTT  1000

seq1  CCTCATCTCACATGTCAGAGAACTAAGAGTGGCCCAGACAACCCAGGTCA  1050
      |||||||||||||||||||||||||||||||   ||||| ||||||||||
seq2  CCTCATCTCACATGTCAGAGAACTAAGAGTG--TCAGAC-ACCCAGGTCA  1047

seq1  TTAGCAGCACTCTGTACATAAGGTCCAACCACATTCTGTCAGTTGTAAAA  1100
      ||||||||||||||||||  | |||  ||||||||||||||| ||| |||
seq2  TTAGCAGCACTCTGTACAATATGTC--ACCACATTCTGTCAGGTGT-AAA  1094

seq1  ATGTCGATTTCCCATTCAT-GTGT-GCAAATCAATA-CCTCTCAGAGATA  1147
      |||||||||  ||| |||| |||| ||||||||||| |||||||   |||
seq2  ATGTCGATT--CCA-TCATGGTGTGGCAAATCAATACCCTCTCAAGAATA  1141

seq1  AATCCTTAAAGGCATACAAATTAAAGATACAAATTGCCAATATCACCTTA  1197
      ||| |   | |||||||||  || | ||||||  || |||||||||| | 
seq2  AATTCCCTATGGCATACAA--TAGA-ATACAA--TGACAATATCACC-TG  1185

seq1  ATAAATATTTGTG  1210
      ||||| |||||||
seq2  ATAAA-ATTTGTG  1197


seq1: chr6_11507733_11508853
seq2: B6Ng01-205D14.g_68_1184 (reverse)

seq1  TTAGATCTACTTGAGATTTACTTCATTTTTCATTTTCCAAGACCTAAGGT  50
      |||||||||| ||||| |||| |||||||||| |||||||||||||||||
seq2  TTAGATCTACCTGAGA-TTAC-TCATTTTTCA-TTTCCAAGACCTAAGGT  47

seq1  TTTCACTTATCCCATAAGTTTTGTATGTTCTGCTCTTTTTCCTTCAGTTC  100
      || |||||||||||||||  ||||||||||||| || ||| | |||||||
seq2  TTCCACTTATCCCATAAG--TTGTATGTTCTGC-CTCTTTTCCTCAGTTC  94

seq1  TAGGAATTTTTGCTTATTTCCTTCTTCATTTTTTTCAATGA-CCAGTTAA  149
      || ||| |||||||||||||||||||||||||||||||||| ||||||||
seq2  TAAGAAATTTTGCTTATTTCCTTCTTCATTTTTTTCAATGACCCAGTTAA  144

seq1  TCATTTAATATGTTATTCATTCTCCATGATTTTGTGTATGT-CCTATAGA  198
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TCATTTAATATGTTATTCATTCTCCATGATTTTGTGTATGTCCCTATAGA  194

seq1  ATCTCTCTCTATTGTTTGCTTCTTATTTTACTCTGCTGTGATCAGATAAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTCTCTATTGTTTGCTTCTTATTTTACTCTGCTGTGATCAGATAAA  244

seq1  TATGTCAAAACTCCTGTAGTTGAATAAACTTTGCTTTATCCTGTTATATA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCAAAACTCCTGTAGTTGAATAAACTTTGCTTTATCCTGTTATATA  294

seq1  GTTGAATGTAGAGAAAGTTCAACGGGCTTCTGAGCTGAATGTATATTCTG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAATGTAGAGAAAGTTCAACGGGCTTCTGAGCTGAATGTATATTCTG  344

seq1  CAGTGCTAGAGATGACTGTTAGGTCCACTTGATCTACAATAATATTTAAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTAGAGATGACTGTTAGGTCCACTTGATCTACAATAATATTTAAC  394

seq1  GCAGATATTCATCTTTTGCTTGCTTATTTTGTTTTGGTGAAATATCTATT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATATTCATCTTTTGCTTGCTTATTTTGTTTTGGTGAAATATCTATT  444

seq1  TGTTATTTTAGAGTACGGAAGTCCCTCATTATCATTATGTTGGAGCTAAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTTTAGAGTACGGAAGTCCCTCATTATCATTATGTTGGAGCTAAT  494

seq1  CTGTCTTTATATCCAGCAGTGTTTTAATATGAATGTGGTTGCATCAATGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTTATATCCAGCAGTGTTTTAATATGAATGTGGTTGCATCAATGT  544

seq1  TTAGTCTTTATCTGTTTAAAATCACAATATCTTCCTATGGTTTGTTCTCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCTTTATCTGTTTAAAATCACAATATCTTCCTATGGTTTGTTCTCT  594

seq1  TAGTCGGTGTGGAATAATTTTCTTTGTATTTTCTGAATAACTTCAGCTTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCGGTGTGGAATAATTTTCTTTGTATTTTCTGAATAACTTCAGCTTG  644

seq1  AAATAAATTTTCAATGATATTAGAGAAATGATATCTGTTTGGTTTCCAGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATTTTCAATGATATTAGAGAAATGATATCTGTTTGGTTTCCAGT  694

seq1  TTCATTTCCTTCAAATACATTTCCCTATCCTTTCATGCTATGGTTGTGGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTCCTTCAAATACATTTCCCTATCCTTTCATGCTATGGTTGTGGT  744

seq1  TGTTTTGATGGTGATATATATTTCTTGGTCTCAACAAAAAAAAATGAGTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGATGGTGATATATATTTCTTGGTCTCAACAAAAAAAAATGAGTT  794

seq1  CTGTTTTGTTTGTTTTGTTTTTTGTTTTTAGTCCAATTTGATACTCTGTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTGTTTGTTTTGTTTTTTGTTTTTAGTCCAATTTGATACTCTGTG  844

seq1  TTTCCATTGGTGAATTGATACCATTAATAATTAAAGTTAGTATCAGTGTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATTGGTGAATTGATACCATTAATAATTAAAGTTAGTATCAGTGTG  894

seq1  TTTTACTTACTGTTGTTATGTTGACTTTATAGAATCTGATGTTTTCATAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTTACTGTTGTTATGTTGACTTTATAGAATCTGATGTTTTCATAT  944

seq1  TTCTCCTTCACTTAACTACTGCTTTGATGTGCCAGTTTGACACCAGAATT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTTCACTTAACTACTGCTTTGATGTGCCAGTTTGACACCAGAATT  994

seq1  ATCTTTAGTCCTTAATTTATCTCAATTGATATCCCCAAACAGTACATTCT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTAGTCCTTAATTTATCTCAATTGATATCCCCAAACAGTACATTCT  1044

seq1  AAAATCCCTTCCTCAAGTGCTTGACTTGCTACCTATCCTTAAAAAGGAAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCCCTTCCTCAAGTGCTTGACTTGCTACCTATCCTTAAAAAGGAAA  1094

seq1  TTGACTTTGGAGGGGGTGAATTC  1121
      |||||||||||||||||||||||
seq2  TTGACTTTGGAGGGGGTGAATTC  1117


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