BAC Information

Click to search

BAC

Clone NameB6Ng01-205I01
Chromosome6 (Build37)
Map Location 131,296,002 - 131,297,105
singlet/doubletsinglet
Overlap genenone
Upstream geneKlra1, LOC100038902, LOC100038903, LOC625436, EG625473, LOC640779, LOC667793, EG667798, EG625558, LOC625566, EG636947, LOC625628, EG625648, LOC667830, EG434094, Klra2, LOC434095, 2010012C16Rik, Styk1
Downstream geneCsda, LOC625758, 5430401F13Rik, LOC625781, Tas2r130, Tas2r107, Tas2r106, Tas2r104, Tas2r105, Tas2r114, LOC639802, EG114600, Prb1, LOC631126, LOC100043878, Prpmp5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-205I01.bB6Ng01-205I01.g
ACCGA025166GA025167
length1,1121,085
definitionB6Ng01-205I01.b B6Ng01-205I01.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcactgtgtccatatgctgcaggggaccttcccagcatggagagga
gagccagaggggaatctcggaatctcaagctgactgactagcaatcaggt
gtgtctttatttatacaagttccacagaacaaagattgattagtgattat
ccaggtggtacagaatatatgtttgatttttcattacatgtccagtcaca
gttagaaaatacaaatggaacaaattcttcttattgttattatcaccata
actcaaatttaaagaatttaaagaatgtctcctccaaagcaaacacattt
aatatattacacctgcttttaggatggcactgtttgatgcttgaaagcac
tgcagacaaatggaaaatctgaactggtctttttcaaatagcaaatactc
atacctaacttcttttactatatgtttcatcatctatgctataaagtagg
cagtgtttactttagtcaacctattttatttactgagttgtattccttta
agagtgtaccctgtatactccctacctttaaactacgtttttagagacct
ctaagcctataatacaatgagacttgaatctgtaacctagtctcctgacc
agtcagagtttgtcaattatctacttgccgggcatcaagtacactatttg
agtttgctcaggggcagatacccaaagcagattcctggagtaaaggcctc
atctagctatgtgcttatctgtgcttaatgatcctcagggcataaagaag
acttccaaatatcggccacattaagttaattttaggatttttccaaaaag
gactcaggtatgatttttctcagaaaaagtcaaaatgattcacaatgcag
aaaatccctaattatgcactatgcagagaccaaaacccaagagttggaga
tagaagtacagcgattgccacaatcagctcagctttgctggaacttgtgg
cagcttccatgatgctcaccatttccagtgggaatatggctgtaccaatg
tactatcatgggtatctcctgctaccaagccctcaaggaatgggcaggct
ttctaacccattctctgccacaacgaatggattacacttacccgtaaccc
ttactggtaaga
gaattcagaacttttcagctgggggaacagagtaccagtgagtacagctt
tacgaggtaagcctggtcttgaactttctaacgaaattcaagacagtcta
tcagaagtaaagtggaaaatgtttggccttgaattttttctagtgttaga
agcccttttgttccttttcacatgttatcaagtggttaaggcagggcgga
ttctagatgaaattcaggacaatctatcagaagtaaagcggggagagaga
gtaggagcaaagagaaaatatggtacacaaaataagcatacaggcctttc
cacgggtcttgaacctgaggaaaagtttaggtcaggtaagaatacctggg
gagagattagaaggaaggagaaggaaaaagaaaagaaaaaagatcaatca
gcagaggtttctaggagaaggagcctatactcatcactaggtgagctcaa
ggagccagttcttaatagttctgaatcagatgaaaaggctattagggcct
ggaaggcgctctcccgagcaggtgaagccactggacaataatgacagagg
caggctcttgcagcctacaaggtcttattgtccaccctagagttgtagat
caagattataaaggggaacttcaggttctctgttcttgtcctcaagttgt
cttttctatatcacaaagagacaaaatagctcaactaataattttgccaa
gcctacatggctgttttttcttcctctggtattcctagagctgccagaga
gattggttctactgaaaatgattctgattacttaataatgccttttagat
tgttgtcaaattttgtctactcacgtaggggtaaccctcgtggcgtcagg
ccatttacaggtctgacaaatggatgtcacgcatatttcctcctttgaga
agaaatcaatatttacatgtttagataagaagagatcacctccataccct
taaatgattttcaaaagctgttggagatattaattggcctcagacgtttt
aaaggattcctttccgctgattaagcattgttttctatttagaatgagaa
tctctctaattctccctcccttaggactcttactc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_131296002_131297105
seq2: B6Ng01-205I01.b_47_1158

seq1  GAATTCACTGTGTCCATATGCTGCAGGGGACCTTCCCAGCATGGAGAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTGTCCATATGCTGCAGGGGACCTTCCCAGCATGGAGAGGA  50

seq1  GAGCCAGAGGGGAATCTCGGAATCTCAAGCTGACTGACTAGCAATCAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAGAGGGGAATCTCGGAATCTCAAGCTGACTGACTAGCAATCAGGT  100

seq1  GTGTCTTTATTTATACAAGTTCCACAGAACAAAGATTGATTAGTGATTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTTTATTTATACAAGTTCCACAGAACAAAGATTGATTAGTGATTAT  150

seq1  CCAGGTGGTACAGAATATATGTTTGATTTTTCATTACATGTCCAGTCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTGGTACAGAATATATGTTTGATTTTTCATTACATGTCCAGTCACA  200

seq1  GTTAGAAAATACAAATGGAACAAATTCTTCTTATTGTTATTATCACCATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGAAAATACAAATGGAACAAATTCTTCTTATTGTTATTATCACCATA  250

seq1  ACTCAAATTTAAAGAATTTAAAGAATGTCTCCTCCAAAGCAAACACATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAATTTAAAGAATTTAAAGAATGTCTCCTCCAAAGCAAACACATTT  300

seq1  AATATATTACACCTGCTTTTAGGATGGCACTGTTTGATGCTTGAAAGCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATTACACCTGCTTTTAGGATGGCACTGTTTGATGCTTGAAAGCAC  350

seq1  TGCAGACAAATGGAAAATCTGAACTGGTCTTTTTCAAATAGCAAATACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGACAAATGGAAAATCTGAACTGGTCTTTTTCAAATAGCAAATACTC  400

seq1  ATACCTAACTTCTTTTACTATATGTTTCATCATCTATGCTATAAAGTAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTAACTTCTTTTACTATATGTTTCATCATCTATGCTATAAAGTAGG  450

seq1  CAGTGTTTACTTTAGTCAACCTATTTTATTTACTGAGTTGTATTCCTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTTTACTTTAGTCAACCTATTTTATTTACTGAGTTGTATTCCTTTA  500

seq1  AGAGTGTACCCTGTATACTCCCTACCTTTAAACTACGTTTTTAGAGACCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGTACCCTGTATACTCCCTACCTTTAAACTACGTTTTTAGAGACCT  550

seq1  CTAAGCCTATAATACAATGAGACTTGAATCTGTAACCTAGTCTCCTGACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCCTATAATACAATGAGACTTGAATCTGTAACCTAGTCTCCTGACC  600

seq1  AGTCAGAGTTTGTCAATTATCTACTTGCCGGGCATCAAGTACACTATTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGAGTTTGTCAATTATCTACTTGCCGGGCATCAAGTACACTATTTG  650

seq1  AGTTTGCTCAGGGGCAGATACCCAAAGCAGATTCCTGGAGTAAAGGCCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGCTCAGGGGCAGATACCCAAAGCAGATTCCTGGAGTAAAGGCCTC  700

seq1  ATCTAGCTATGTGCTTATCTGTGCTTAATGATCCTCAGGGCATAAAGAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGCTATGTGCTTATCTGTGCTTAATGATCCTCAGGGCATAAAGAAG  750

seq1  ACTTCCAAATATCGGCCACATTAAGTTAATTTTAGGATTTTTCCAAAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCAAATATCGGCCACATTAAGTTAATTTTAGGATTTTTCCAAAAAG  800

seq1  GACTCAGGTATGATTTTTCTCAGAAAAAGTCAAAATGATTCACAATGCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAGGTATGATTTTTCTCAGAAAAAGTCAAAATGATTCACAATGCAG  850

seq1  AAAATCCCTAATTATGCACTATGCAGAGACCAAAACCCAAGAGTTGGAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCCCTAATTATGCACTATGCAGAGACCAAAACCCAAGAGTTGGAGA  900

seq1  TAGAAGTACAGCGATTGCCACAATCAGCTCAGCTTTGCTGGAAC-TGTGG  949
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TAGAAGTACAGCGATTGCCACAATCAGCTCAGCTTTGCTGGAACTTGTGG  950

seq1  CAGCTT-CATGATGCTCACCATTTCCAGTGG--ATATGGCTGTACCAATG  996
      |||||| ||||||||||||||||||||||||  |||||||||||||||||
seq2  CAGCTTCCATGATGCTCACCATTTCCAGTGGGAATATGGCTGTACCAATG  1000

seq1  TACTATCAT-GGTATCTTCTGCTACCAAG-CCTCA--GGATGGGCAGGCT  1042
      ||||||||| ||||||| ||||||||||| |||||  | |||||||||||
seq2  TACTATCATGGGTATCTCCTGCTACCAAGCCCTCAAGGAATGGGCAGGCT  1050

seq1  TCTAAACCCCATCCCTG-CACACAGATGGGATTTACCACTTACCCGT-AT  1090
      |   |||||  || ||| ||||  ||  |||||   ||||||||||| | 
seq2  TTCTAACCCATTCTCTGCCACAACGAATGGATT--ACACTTACCCGTAAC  1098

seq1  CCTTACTGCTAAGA  1104
      |||||||| |||||
seq2  CCTTACTGGTAAGA  1112