BAC Information

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BAC

Clone NameB6Ng01-205J22
Chromosome6 (Build37)
Map Location 30,989,495 - 31,126,500
singlet/doubletdoublet
Overlap geneLOC100038973, AB041803
Upstream gene1700080G18Rik, Nrf1, Ube2h, Zc3hc1, 2410127E18Rik, 2700094F01Rik, 1700025E21Rik, Cpa2, Cpa4, Cpa5, Cpa1, Tsga14, Mest, Copg2, Copg2, Tsga13, Klf14
Downstream geneMkln1, Podxl, EG619959, LOC620104, 1700012A03Rik, Plxna4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-205J22.bB6Ng01-205J22.g
ACCGA025254GA025255
length593992
definitionB6Ng01-205J22.b B6Ng01-205J22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,989,495 - 30,990,092)(31,125,518 - 31,126,500)
sequence
actaggtaaaccagactgacctgaaattcacagacctggtgctggcctca
gaggtgtgagtcaccaacacccagctgagtctactcattttcatccattt
atcactctgatcataagcatttccttcactgttcacatgttccccaacac
tgtctgtgctcatagaccatgaagccagggatggggaaggctgggagccg
ggatacgaacaaagcagggacatgcactgtgaggatatcaggaaacaacg
cccgggcttagcattccagaaacaggaattaaaaagaatgtagaggatag
aagacatcactgtgtccatccttagaaaatacacgagagaggtagaggca
ggcagatttctgagttcgaggccagactggtctacagagtgagttccagg
acagccagggctacacagagaaaccctgtctcgaaaaacaaacaaacaaa
caaacaaacaaacaaacaagaacaagaggggggggctggaaagatggctc
agtggttaagagcactggctgctctttcagaggttctgagttcaattccc
agcaatcacatggtgggctcacaaccatctgtaatgagatctg
gaattctcattttgctagtatttgtttcttttgagcttaatatatcgccc
tgaccagactggaactgtatagaccaggctagcctcaagatcacaagaga
tccacctgcctctgcctcccaagtgctgtgattcaaaggcgtgacccacc
atggctagcttttgctggaatttacatttataaagggaaaaagtttgagc
tcacggtgtttgcttttaagtgtaattttactgtggtgctttgagtatta
gaaaaggttccgaatctggaaggaggtcaccttaagcctctcccttccct
ttggttccttcttacacgttttatctgtgacttgtttgtggcagatttaa
acaccacccctgagcagccagcctgtcctggttcccattatagggctgtt
tcctggggagctgatgtgagagctctcctgtggttcatttcactcacgtg
gagcttgctgctgcccccagcagaggaaagtggctcttgtgtagaacgcg
gcatgattttacctcactgtgtagcacggtgttcatacatgctctcctcc
cacccctatggttctgtcacaatactgcgatactcgcactggtcacaaga
ggccagctctcttgctcagggaggcagaaaggaggtagaacatagctaac
aaagaggcaggccaccatctttctaagttactctttaaaatcatgggtca
ttttagcaatacaaaaagtgcataaggaactcaatatagaactcaaatgg
tacgtggtcattaagacatactatgtgttttcccagaagcctttgctcct
cactgctttcctctctactgaatcttgtcatcccaatgcattttaaaaac
atgacaatgtaaacatacatatattctcaaacataagcatcattttcaca
gcatgctgttgttttgtatgttcctatccaaagtattcagtttgtgtctt
gttgggaagggaaggagaggcctgagaagatggaggtgtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_30989495_30990092
seq2: B6Ng01-205J22.b_47_645

seq1  GAATTCACTAGGTAAACCAGACTGACCTGAAATTCACAGACCTGGTGCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTAGGTAAACCAGACTGACCTGAAATTCACAGACCTGGTGCTG  50

seq1  GCCTCAGAGGTGTGAGTCACCAACACCCAGCTGAGTCTACTCATTTTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAGAGGTGTGAGTCACCAACACCCAGCTGAGTCTACTCATTTTCAT  100

seq1  CCATTTATCACTCTGATCATAAGCATTTCCTTCACTGTTCACATGTTCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTATCACTCTGATCATAAGCATTTCCTTCACTGTTCACATGTTCCC  150

seq1  CAACACTGTCTGTGCTCATAGACCATGAAGCCAGGGATGGGGAAGGCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACTGTCTGTGCTCATAGACCATGAAGCCAGGGATGGGGAAGGCTGG  200

seq1  GAGCCGGGATACGAACAAAGCAGGGACATGCACTGTGAGGATATCAGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCGGGATACGAACAAAGCAGGGACATGCACTGTGAGGATATCAGGAA  250

seq1  ACAACGCCCGGGCTTAGCATTCCAGAAACAGGAATTAAAAAGAATGTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACGCCCGGGCTTAGCATTCCAGAAACAGGAATTAAAAAGAATGTAGA  300

seq1  GGATAGAAGACATCACTGTGTCCATCCTTAGAAAATACACGAGAGAGGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGAAGACATCACTGTGTCCATCCTTAGAAAATACACGAGAGAGGTA  350

seq1  GAGGCAGGCAGATTTCTGAGTTCGAGGCCAGACTGGTCTACAGAGTGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGGCAGATTTCTGAGTTCGAGGCCAGACTGGTCTACAGAGTGAGT  400

seq1  TCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACAAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACAAACA  450

seq1  AACAAACAAACAAACAAACAAACAAGAACAAGAGGGGGGGGCTGGAAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACAAACAAACAAACAAACAAGAACAAGAGGGGGGGGCTGGAAAGA  500

seq1  TGGCTCAGTGGTTAAGAGCACTGGCTGCTCTTTCAGAGGTTCTGAGTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCAGTGGTTAAGAGCACTGGCTGCTCTTTCAGAGGTTCTGAGTTCA  550

seq1  ATTCCCAGCAATCACATGGT-GGCTCACAACCATCTGTAATGAGATCTG  598
      |||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ATTCCCAGCAATCACATGGTGGGCTCACAACCATCTGTAATGAGATCTG  599

seq1: chr6_31125518_31126500
seq2: B6Ng01-205J22.g_67_1058 (reverse)

seq1  CCCACACCTCCATCTTCTCA-GCCTCTCCTTCCC-TCCCAAC-AGACAC-  46
      |||||||||||||||||||| ||||||||||||| ||||||| |||||| 
seq2  CCCACACCTCCATCTTCTCAGGCCTCTCCTTCCCTTCCCAACAAGACACA  50

seq1  AACTG-ATACTTTGGATA-GAACATACAAAAC-ACAGCATGCTGTG-AAA  92
      ||||| |||||||||||| ||||||||||||| ||||||||||||| |||
seq2  AACTGAATACTTTGGATAGGAACATACAAAACAACAGCATGCTGTGAAAA  100

seq1  TGATGC-TATGTTTGAGAATATATGTATGTTTACATTGTCATGTTTTTAA  141
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCTTATGTTTGAGAATATATGTATGTTTACATTGTCATGTTTTTAA  150

seq1  AATGCATTGGGATGACAAGATTCAGTAGAGAGGAAAGCAGTGAGGAGCAA  191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCATTGGGATGACAAGATTCAGTAGAGAGGAAAGCAGTGAGGAGCAA  200

seq1  AGGCTTCTGGGAAAACACATAGTATGTCTTAATGACCACGTACCATTTGA  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTCTGGGAAAACACATAGTATGTCTTAATGACCACGTACCATTTGA  250

seq1  GTTCTATATTGAGTTCCTTATGCACTTTTTGTATTGCTAAAATGACCCAT  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTATATTGAGTTCCTTATGCACTTTTTGTATTGCTAAAATGACCCAT  300

seq1  GATTTTAAAGAGTAACTTAGAAAGATGGTGGCCTGCCTCTTTGTTAGCTA  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTAAAGAGTAACTTAGAAAGATGGTGGCCTGCCTCTTTGTTAGCTA  350

seq1  TGTTCTACCTCCTTTCTGCCTCCCTGAGCAAGAGAGCTGGCCTCTTGTGA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTACCTCCTTTCTGCCTCCCTGAGCAAGAGAGCTGGCCTCTTGTGA  400

seq1  CCAGTGCGAGTATCGCAGTATTGTGACAGAACCATAGGGGTGGGAGGAGA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGCGAGTATCGCAGTATTGTGACAGAACCATAGGGGTGGGAGGAGA  450

seq1  GCATGTATGAACACCGTGCTACACAGTGAGGTAAAATCATGCCGCGTTCT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTATGAACACCGTGCTACACAGTGAGGTAAAATCATGCCGCGTTCT  500

seq1  ACACAAGAGCCACTTTCCTCTGCTGGGGGCAGCAGCAAGCTCCACGTGAG  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAGAGCCACTTTCCTCTGCTGGGGGCAGCAGCAAGCTCCACGTGAG  550

seq1  TGAAATGAACCACAGGAGAGCTCTCACATCAGCTCCCCAGGAAACAGCCC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGAACCACAGGAGAGCTCTCACATCAGCTCCCCAGGAAACAGCCC  600

seq1  TATAATGGGAACCAGGACAGGCTGGCTGCTCAGGGGTGGTGTTTAAATCT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATGGGAACCAGGACAGGCTGGCTGCTCAGGGGTGGTGTTTAAATCT  650

seq1  GCCACAAACAAGTCACAGATAAAACGTGTAAGAAGGAACCAAAGGGAAGG  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACAAACAAGTCACAGATAAAACGTGTAAGAAGGAACCAAAGGGAAGG  700

seq1  GAGAGGCTTAAGGTGACCTCCTTCCAGATTCGGAACCTTTTCTAATACTC  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGCTTAAGGTGACCTCCTTCCAGATTCGGAACCTTTTCTAATACTC  750

seq1  AAAGCACCACAGTAAAATTACACTTAAAAGCAAACACCGTGAGCTCAAAC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCACCACAGTAAAATTACACTTAAAAGCAAACACCGTGAGCTCAAAC  800

seq1  TTTTTCCCTTTATAAATGTAAATTCCAGCAAAAGCTAGCCATGGTGGGTC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCCTTTATAAATGTAAATTCCAGCAAAAGCTAGCCATGGTGGGTC  850

seq1  ACGCCTTTGAATCACAGCACTTGGGAGGCAGAGGCAGGTGGATCTCTTGT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCTTTGAATCACAGCACTTGGGAGGCAGAGGCAGGTGGATCTCTTGT  900

seq1  GATCTTGAGGCTAGCCTGGTCTATACAGTTCCAGTCTGGTCAGGGCGATA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTGAGGCTAGCCTGGTCTATACAGTTCCAGTCTGGTCAGGGCGATA  950

seq1  TATTAAGCTCAAAAGAAACAAATACTAGCAAAATGAGAATTC  983
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAGCTCAAAAGAAACAAATACTAGCAAAATGAGAATTC  992