BAC Information

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BAC

Clone NameB6Ng01-205K13
Chromosome2 (Build37)6 (Build37)
Map Location 84,813,486 - 84,814,40392,392,136 - 92,392,526
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668107, LOC668113, LOC668115, LOC668119, LOC383725, Calcrl, Tfpi, LOC672763, Ctnnd1, 2700094K13Rik, Txndc14, Med19, Zdhhc5, Clp1, Ypel4, Serping1, Ube2l6, Smtnl1, Timm10, Slc43a1, Rtn4rl2, Slc43a3
Downstream genePrg2, Prg3, P2rx3, Ssrp1, Tnks1bp1, Agtrl1, LOC625033, Lrrc55, Olfr987, GA_x5J8B7W531T-1241080-1240524, Olfr988, GA_x5J8B7W531T-1286425-1285652, Olfr990-ps1, Olfr991-ps1, Olfr992, Olfr993, Olfr994, Olfr995, 4833423E24Rik, Olfr996, Olfr997-ps1, Olfr998, Olfr999-ps1, Olfr1000, Olfr1001-ps1, Olfr1002, GA_x5J8B7W531T-1558688-1559570, Olfr1004-ps1, Olfr154, GA_x5J8B7W531T-1577060-1577325, Olfr1006, GA_x5J8B7W531T-1588603-1588734, Olfr1008, Olfr1009, Olfr1010, Olfr1012, Olfr1013, Olfr1014, Olfr1015, Olfr1016, GA_x5J8B7W3KVV-518538-519236, Olfr1018, Olfr1019, Olfr1020, Olfr1021-ps1, Olfr1022, Olfr1023, Olfr1024, Olfr1025-ps1, Olfr1026, Olfr1027-ps1, Olfr1028
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-205K13.bB6Ng01-205K13.g
ACCGA025281GA025282
length1,130688
definitionB6Ng01-205K13.b B6Ng01-205K13.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(84,813,486 - 84,814,403)(92,392,136 - 92,392,526)
sequence
gaattcataaaagtaaaatgtttttgcacagctaaagaaacaaccaacta
ggtgaagaggaagcctacagaatgagagagaatctttggcagctatacat
ctgatggagtattattctccagaataaagaactcaaaatacaaagagtca
aaacaaaatgacccatttaaaactgggtttgaaacctaaatagagagtaa
taaaaaatggtaaagaaatatgtaaaaagccaggtgtggtggcgcacgct
ttaatcccagcactcgggaggcagaggcaggcggatttctgaattcgagg
ccagcctggtctacaaagtgagttccaagacagccagggctatacagaga
aaccctctctcgaaaaaccaaaaccaaaacaaaaaaaaaaaaacaaaaaa
aaaacaaaacaaacaaacaaacaaacaaaaaaaactcaccattcccagaa
atgaggaaaaagcaagtcaagacaactttgagatttcatcttaccactgt
cagaattgcaaagatcaataaaacaaccaaaacaaaaacaaatgctgcag
gagactcaggggaacaaagacctcattcacggttggtgaaacagtcagag
tggagaattctcaaaaggctaaaatctactgcacggcccagctatagcac
ttcttgacatctgaccaaaggactcaacagtcccctccacagacacttgc
tcagccatgaaggagttacactgctaattaactaaacacacctataatac
acacacacacacacacacacacacacacacaccagagagagagagagaga
gagagagatgtgatgcctatgaaccacatcaatgaccagcctggcatgat
aaccctaagggttcaatagtggcacatatatcttggtgacaaccaacaac
ttctctaattagacttaagacacactcaacaagagggaaaccatgtctgg
ccctggaaacctagctaactactcagtgctagtgaagtcatggttattag
agaagcatctataagctctactttcctaaatcaacataatcctaacaata
acctataaaacatttgtctttattcttcatagaataagttgtagtgtccc
ctctcatcgagggcattccatatgcataga
gaattcaactcaataccagatttttattctccacaccaagtccataccat
ctgattccaacaatgtgcattataattgccatgtgctgatttgctatgtg
ccccagatgatggcaagataaggtagggtcaggaccatctaattgctcat
gatctactaccaaaggaaagaaacatggtcacagaacacaggtcataatg
aagaaacaataaaggcataagaaatagattcatgtgtcttaaatttttac
aaactattaaaaggatggaccatctagagactgccatacctggggatcca
tcccattatcagcctccaaacggtgacgccattgcatacactagcaggat
tttgctgaaaggaccctgatatagctctcttgtgaggcaatgctggggcc
tagcaaacacagaagtggatgctcacagtcagctattggatggatcacag
ggcccccaatggaggagctagagaaagtacccaaggagctaaagagatct
gcaaccctataggtggaacaacaatatgaactaaccactacccccccccc
ccaccggagctcatgtctttagctgcatatgtatcagaagatggcctagt
cggccatcagtggaaagaggcccattggtcttgcaaactttatatgcctc
agtacaggggaatgccagggccaagaagtgggagtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_84813486_84814403
seq2: B6Ng01-205K13.b_257_1175

seq1  AAAGAAATATGTAAAAAGCCAGGTGTGGTGGCGCACGCTTTAATCCCAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAATATGTAAAAAGCCAGGTGTGGTGGCGCACGCTTTAATCCCAGC  50

seq1  ACTCGGGAGGCAGAGGCAGGCGGATTTCTGAATTCGAGGCCAGCCTGGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCGGGAGGCAGAGGCAGGCGGATTTCTGAATTCGAGGCCAGCCTGGTC  100

seq1  TACAAAGTGAGTTCCAAGACAGCCAGGGCTATACAGAGAAACCCTCTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAGTGAGTTCCAAGACAGCCAGGGCTATACAGAGAAACCCTCTCTC  150

seq1  GAAAAACCAAAACCAAAACAAAAAAAAAAAAACAAAAAAAAAACAAAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAACCAAAACCAAAACAAAAAAAAAAAAACAAAAAAAAAACAAAACA  200

seq1  AACAAACAAACAAACAAAAAAAACTCACCATTCCCAGAAATGAGGAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACAAACAAACAAAAAAAACTCACCATTCCCAGAAATGAGGAAAAA  250

seq1  GCAAGTCAAGACAACTTTGAGATTTCATCTTACCACTGTCAGAATTGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTCAAGACAACTTTGAGATTTCATCTTACCACTGTCAGAATTGCAA  300

seq1  AGATCAATAAAACAACCAAAACAAAAACAAATGCTGCAGGAGACTCAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCAATAAAACAACCAAAACAAAAACAAATGCTGCAGGAGACTCAGGG  350

seq1  GAACAAAGACCTCATTCACGGTTGGTGAAACAGTCAGAGTGGAGAATTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAAGACCTCATTCACGGTTGGTGAAACAGTCAGAGTGGAGAATTCT  400

seq1  CAAAAGGCTAAAATCTACTGCACGGCCCAGCTATAGCACTTCTTGACATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGGCTAAAATCTACTGCACGGCCCAGCTATAGCACTTCTTGACATC  450

seq1  TGACCAAAGGACTCAACAGTCCCCTCCACAGACACTTGCTCAGCCATGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCAAAGGACTCAACAGTCCCCTCCACAGACACTTGCTCAGCCATGAA  500

seq1  GGAGTTACACTGCTAATTAACTAAACACACCTATAATACACACACACACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTACACTGCTAATTAACTAAACACACCTATAATACACACACACACA  550

seq1  CACACACACACACACACACACCAGAGAGAGAGAGAGAGAGAGAGAGATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACCAGAGAGAGAGAGAGAGAGAGAGAGATGT  600

seq1  GATGCCTATGAACCACATCAATGACCAGCCTGGCATGATAACCCTAAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCTATGAACCACATCAATGACCAGCCTGGCATGATAACCCTAAGGG  650

seq1  TTCAATAGTGGCACATATATCTTGGTGACAACCAACAAC-TCTCTAATTA  699
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TTCAATAGTGGCACATATATCTTGGTGACAACCAACAACTTCTCTAATTA  700

seq1  GACTTAAGACACACTCAACAAGAGGGAAACCATGCCTGGCCCTGGAAACC  749
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GACTTAAGACACACTCAACAAGAGGGAAACCATGTCTGGCCCTGGAAACC  750

seq1  TAGCTAACTACTCAGTGCTAGTGAAGTCATGGTTATTAGAGAAGCATCTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTAACTACTCAGTGCTAGTGAAGTCATGGTTATTAGAGAAGCATCTA  800

seq1  TAAGCTCTACTTTCCTAAATCAACATAATCCCTAACAATAACCTAT-AAA  848
      ||||||||||||||||||||||||||||| |||||||||||||||| |||
seq2  TAAGCTCTACTTTCCTAAATCAACATAAT-CCTAACAATAACCTATAAAA  849

seq1  CATTTGTCTTTA-TCTCCATAG-ATAAG-TGTAGTGTTCCCCTCTCATCA  895
      |||||||||||| ||| ||||| ||||| ||||||| |||||||||||| 
seq2  CATTTGTCTTTATTCTTCATAGAATAAGTTGTAGTG-TCCCCTCTCATCG  898

seq1  AGGGCATTTCCATATGCAATAGA  918
      |||||| |||||||||| |||||
seq2  AGGGCA-TTCCATATGC-ATAGA  919

seq1: chr6_92392136_92392526
seq2: B6Ng01-205K13.g_359_755 (reverse)

seq1  CCCACTCCCACTTCTTGGCCCTGGCGTTCCCCCGTACTGAGTCATATAAA  50
      ||||||||||||||||||||||||| |||||| |||||||| ||||||||
seq2  CCCACTCCCACTTCTTGGCCCTGGCATTCCCCTGTACTGAGGCATATAAA  50

seq1  GTTTGCAAGACCAAGGGGCCTCTCTTCCCAATGATGGCTGACTAAGCCAT  100
      |||||||||||||| ||||  ||||| ||| ||||||| ||||| |||||
seq2  GTTTGCAAGACCAATGGGC--CTCTTTCCACTGATGGCCGACTAGGCCAT  98

seq1  CTTCTGCTACATATGCAGCTAGAGACATGAGCTC----------TGGGGG  140
      |||||| |||||||||||||| ||||||||||||           |||||
seq2  CTTCTGATACATATGCAGCTAAAGACATGAGCTCCGGTGGGGGGGGGGGG  148

seq1  TACTGGTTAGTTCATATTGTTGTTCCACCTATAGGGTTGCAGACCCCTTT  190
      || |||||||||||||||||||||||||||||||||||||||| | ||||
seq2  TAGTGGTTAGTTCATATTGTTGTTCCACCTATAGGGTTGCAGATCTCTTT  198

seq1  AGCTCCTTGGGTACTTTCTCCAGCTCCTCCATTGAGGGCCCTGTGATCCA  240
      |||||||||||||||||||| ||||||||||||| |||||||||||||||
seq2  AGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGGGGCCCTGTGATCCA  248

seq1  TCCAATAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGGCCCCGGCA  290
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TCCAATAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGGCCCCAGCA  298

seq1  TAGCCTCACAAGGGACAGCTATATCAGGGTCCTTTCAGCAAAATCTTGCT  340
      | |||||||||  || ||||||||||||||||||||||||||||| ||||
seq2  TTGCCTCACAA--GAGAGCTATATCAGGGTCCTTTCAGCAAAATCCTGCT  346

seq1  GGTGTATGCAATAGTGTCAGCGTTTGGAGGCTGATTATGGGATGGATCCC  390
       ||||||||||| | |||| ||||||||||||||| ||||||||||||||
seq2  AGTGTATGCAATGGCGTCACCGTTTGGAGGCTGATAATGGGATGGATCCC  396

seq1  C  391
      |
seq2  C  397