BAC Information

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BAC

Clone NameB6Ng01-206C15
Chromosome6 (Build37)9 (Build37)
Map Location 131,055,126 - 131,055,64173,131,153 - 73,132,260
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100038894, LOC100038897, Klra8, EG654449, Klra9, Klra7, LOC100038898, Klra12, Klra10, Klra13, Klra3, Klra1, LOC100038902, LOC100038903, LOC625436, EG625473, LOC640779, LOC667793, EG667798, EG625558, LOC625566, EG636947, LOC625628, EG625648
Downstream geneLOC667830, EG434094, Klra2, LOC434095, 2010012C16Rik, Styk1, Csda, LOC625758, 5430401F13Rik, LOC625781, Tas2r130, Tas2r107, Tas2r106, Tas2r104, Tas2r105, Tas2r114, LOC639802
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-206C15.bB6Ng01-206C15.g
ACCGA025650GA025651
length1,1501,104
definitionB6Ng01-206C15.b B6Ng01-206C15.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(131,055,126 - 131,055,641)(73,131,153 - 73,132,260)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcgattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacacgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctggatcttcaattctattccattgg
tctacctgtctgtctctataccagtaccatgcagtttttattacaattgc
tctgtagtaaagctttaggtctggcatggtgattccgccagaagttcttt
tatccttgagaagactttttgctatcctaggttttttgttattccagaca
aatttgcaaattgctccttccaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcagagatttgaagtttttatcata
cagatctttcacctccttagttagagtcacgccaagatattttatattat
ttgtgactattgagaagggtgtgtttccttaatttcttttctcagcctgt
tattctttgttaggagaaaggccattgacttgtttgagtttatttataat
ccagctacttcaccgaggcggctttcagttaggagtctctgtagaatttt
aggccacttattaatacctctatatcatcctgcaaaagtgatattttgac

gaattcttctgccttagcctcccagatgttgagatgacaggtgcaccatc
tcatctgcctttgagaaaactgttgaagtgtaagaaggaagggatgtgaa
tactaaatcagaacatcatggggaaagctagctatgaacaaagagtttgg
tgccaattctacaaaaatagtctgtggagatgtcatctaaaaaatggttt
tcagaggaatgagacctttctttgtgggacccaaaagagcagctctctgc
acaataataaatctgttcagagtggaaacctcttaggagacgaggggaat
gtggctgctgatctcttcattccaattgatgtgccagtggtgtgtgttta
tgagctacagagtggcttttcaatactaaacggtgactggatgatgggcc
gtctctaatgatgttaatcattacagccctccatccttgtttcacaggtg
tcaaaacaggccctgctgaggtttgtgtcttaatgttcaagtttaggtga
aacatgcaggtaggagagttcttcatgtcctctgtcaggggagcagggct
caggtatagaggataagaggagtcacctggtgtcttgtatgtagagcaca
acccacaggcagaaagcctggttcatgatgctgtgtggccggcccactgc
agcaccgtggtccctggcccgggggagtctgcggacacccacaaggaccc
acacaggatccgccacaggatcctaagacctctggtgagtggaacacaac
ttctgccagcaggcaggttcaaacaccagatatctgggcaccatccctgc
aagagaggagcttgcatgagagagtactctgaccactgaaactaaggata
gagctagtctcacaggtctgctgatagaggctaacataatcacctgagga
acaagctctaaccagagacaactataacagctagctccagagaatacaga
tggccaaaggccaatgtaagaatcctactaacagaaatcaagaccgcttc
acatcaacagaacgcagcactttcacaccacctagtcctggggcacccca
acctactgaaagctagaccggatttaaaagcatatctcatgatgatggta
agga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_131055126_131055641
seq2: B6Ng01-206C15.b_685_1192 (reverse)

seq1  GTCAAAATATCACTTTTTGCA-GATGATATGATAGTATATATAAGTGACC  49
      ||||||||||||| ||||||| ||||||||    ||||  ||||||| ||
seq2  GTCAAAATATCAC-TTTTGCAGGATGATATAGAGGTATTAATAAGTGGCC  49

seq1  CTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTGAA  99
         ||||||||| ||||| ||||||||  |||| || | || ||||||||
seq2  --TAAAATTCTA-CAGAG-ACTCCTAA--CTGA-AAGCCGCCTCGGTGAA  92

seq1  GTAGCTGGATATAAAATAAACTCAAACAAGTCAATGGCCTTTCTCTATAC  149
      ||||||||||   ||||||||||||||||||||||||||||||||   ||
seq2  GTAGCTGGATTATAAATAAACTCAAACAAGTCAATGGCCTTTCTCCTAAC  142

seq1  AAAGAATAAACAGGCTGAG-AAAGAAATTAGGGAAACAACACCCTTCTCA  198
      ||||||| ||||||||||| |||||||||| |||||| ||||||||||||
seq2  AAAGAAT-AACAGGCTGAGAAAAGAAATTAAGGAAAC-ACACCCTTCTCA  190

seq1  ATAGTCACAAATAATATAAAATATCTTGGCGTGACTCTAACTAAGGAAGT  248
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ATAGTCACAAATAATATAAAATATCTTGGCGTGACTCTAACTAAGGAGGT  240

seq1  GAAAGATCTGTATGATAAAAACTTCAAATCTCTGAAGAAAGAAATTAAAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGATCTGTATGATAAAAACTTCAAATCTCTGAAGAAAGAAATTAAAG  290

seq1  AAGATCTCAGAAGATGGAAAGATCTCCCATGCTCATGGATTGGCAGGATC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCTCAGAAGATGGAAAGATCTCCCATGCTCATGGATTGGCAGGATC  340

seq1  AACATTGTAAAAATGGCTATCTTGCCAAAAGCAATCTACAGATTCAATGC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTGTAAAAATGGCTATCTTGCCAAAAGCAATCTACAGATTCAATGC  390

seq1  AATCCCCATCAAAATTCCAACTCAATTCTTCAACGAATTGGAAGGGGCAA  448
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AATCCCCATCAAAATTCCAACTCAATTCTTCAACGAATTGGAAGGAGCAA  440

seq1  TTTGCAAATTTGTCTGGAATAACAAAAAACCTAGGATAGCAAAAAGTCTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAAATTTGTCTGGAATAACAAAAAACCTAGGATAGCAAAAAGTCTT  490

seq1  CTCAAGGATAAAAGAACT  516
      ||||||||||||||||||
seq2  CTCAAGGATAAAAGAACT  508

seq1: chr9_73131153_73132260
seq2: B6Ng01-206C15.g_63_1166

seq1  GAATTCTTCTGCCTTAGCCTCCCAGATGTTGAGATGACAGGTGCACCATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTGCCTTAGCCTCCCAGATGTTGAGATGACAGGTGCACCATC  50

seq1  TCATCTGCCTTTGAGAAAACTGTTGAAGTGTAAGAAGGAAGGGATGTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTGCCTTTGAGAAAACTGTTGAAGTGTAAGAAGGAAGGGATGTGAA  100

seq1  TACTAAATCAGAACATCATGGGGAAAGCTAGCTATGAACAAAGAGTTTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAAATCAGAACATCATGGGGAAAGCTAGCTATGAACAAAGAGTTTGG  150

seq1  TGCCAATTCTACAAAAATAGTCTGTGGAGATGTCATCTAAAAAATGGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAATTCTACAAAAATAGTCTGTGGAGATGTCATCTAAAAAATGGTTT  200

seq1  TCAGAGGAATGAGACCTTTCTTTGTGGGACCCAAAAGAGCAGCTCTCTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGGAATGAGACCTTTCTTTGTGGGACCCAAAAGAGCAGCTCTCTGC  250

seq1  ACAATAATAAATCTGTTCAGAGTGGAAACCTCTTAGGAGACGAGGGGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAATAAATCTGTTCAGAGTGGAAACCTCTTAGGAGACGAGGGGAAT  300

seq1  GTGGCTGCTGATCTCTTCATTCCAATTGATGTGCCAGTGGTGTGTGTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTGCTGATCTCTTCATTCCAATTGATGTGCCAGTGGTGTGTGTTTA  350

seq1  TGAGCTACAGAGTGGCTTTTCAATACTAAACGGTGACTGGATGATGGGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTACAGAGTGGCTTTTCAATACTAAACGGTGACTGGATGATGGGCC  400

seq1  GTCTCTAATGATGTTAATCATTACAGCCCTCCATCCTTGTTTCACAGGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTAATGATGTTAATCATTACAGCCCTCCATCCTTGTTTCACAGGTG  450

seq1  TCAAAACAGGCCCTGCTGAGGTTTGTGTCTTAATGTTCAAGTTTAGGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAACAGGCCCTGCTGAGGTTTGTGTCTTAATGTTCAAGTTTAGGTGA  500

seq1  AACATGCAGGTAGGAGAGTTCTTCATGTCCTCTGTCAGGGGAGCAGGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGCAGGTAGGAGAGTTCTTCATGTCCTCTGTCAGGGGAGCAGGGCT  550

seq1  CAGGTATAGAGGATAAGAGGAGTCACCTGGTGTCTTGTATGTAGAGCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTATAGAGGATAAGAGGAGTCACCTGGTGTCTTGTATGTAGAGCACA  600

seq1  ACCCACAGGCAGAAAGCCTGGTTCATGATGCTGTGTGGCCGGCCCACTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACAGGCAGAAAGCCTGGTTCATGATGCTGTGTGGCCGGCCCACTGC  650

seq1  AGCACCGTGGTCCCTGGCCCGGGGGAGTCTGCGGACACCCACAAGGACCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCGTGGTCCCTGGCCCGGGGGAGTCTGCGGACACCCACAAGGACCC  700

seq1  ACACAGGATCCGCCACAGGATCCTAAGACCTCTGGTGAGTGGAACACAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGATCCGCCACAGGATCCTAAGACCTCTGGTGAGTGGAACACAAC  750

seq1  TTCTGCCAGCAGGCAGGTTCAAACACCAGATATCTGGGCACCATCCCTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCCAGCAGGCAGGTTCAAACACCAGATATCTGGGCACCATCCCTGC  800

seq1  AAGAGAGGAGCTTGCATGAGAGAGTACTCTGACCACTGAAACTAAGGATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGGAGCTTGCATGAGAGAGTACTCTGACCACTGAAACTAAGGATA  850

seq1  GAGCTAGTCTCACAGGTCTGCTGATAGAGGCTAACATAATCACCTGAGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTAGTCTCACAGGTCTGCTGATAGAGGCTAACATAATCACCTGAGGA  900

seq1  ACAAGCTCTAACCAGAGACAACTATAACAGCTAGCTCCAGAGAATACAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ACAAGCTCTAACCAGAGACAACTATAACAGCTAGCTCCAGAGAATAC-AG  949

seq1  ATGGCAAAAGGCAAATGTAAGAATCCTACTAACAGAAATCAAGACCGCTC  1000
      ||||| |||||| |||||||||||||||||||||||||||||||||||| 
seq2  ATGGCCAAAGGCCAATGTAAGAATCCTACTAACAGAAATCAAGACCGCTT  999

seq1  ACCATCAACAGAACGCAGCACTTCCACACCACCTAGTCCT-GGGCACCCC  1049
        ||||||||||||||||||||| |||||||||||||||| |||||||||
seq2  CACATCAACAGAACGCAGCACTTTCACACCACCTAGTCCTGGGGCACCCC  1049

seq1  AACACAACTGAAAAGCTAGACCCGGATTTAAAAGCATATCTCATGATGAT  1099
      ||| | |||| ||||||||| |||||||||||||||||||||||||||||
seq2  AAC-CTACTG-AAAGCTAGA-CCGGATTTAAAAGCATATCTCATGATGAT  1096

seq1  GGTAGAGGA  1108
      |||| ||||
seq2  GGTA-AGGA  1104