BAC Information

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BAC

Clone NameB6Ng01-206D14
Chromosome6 (Build37)
Map Location 78,425,296 - 78,426,393
singlet/doubletsinglet
Overlap genenone
Upstream geneCtnna2, LOC668169, EG434050, Pap, Reg3d, Reg3a, Reg2, Reg1, Reg3g
Downstream geneLOC621716, Ppia-ps6_789.1, LOC384440
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-206D14.bB6Ng01-206D14.g
ACCGA025695GA025696
length1,1771,088
definitionB6Ng01-206D14.b B6Ng01-206D14.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacctaaacatgataaaagcaatctaaagcaaacca
gtagccaacatcaaagtacatggagagaagctggaagcaatcccactaaa
atcagggactagacaaggctgcccactttctccataccttttcaacatag
tacttgaagtattagccagaacaattcgacaacaaaaggagatcaagggg
atacaaattggaaaagaggaagtcaaaatatcactttttgcagataatat
gatagtatatataactgaccctaaaaattctaccagagaactcctaaacc
tgataaacagcttcggtgaagtagctggatataaaataaactcaaacaag
tcaatggcctttctgtatacaaagaataaacaggctgagaaagaaattag
ggaaacaacacccttctcaatagtcacaaataatataaaatatcttggcg
tgactctaactaaggaagtgaaagatctctatgataaaaacttcaaatct
ctgaagaaagaaattaaggaagatctcagaagatggaaagatctcccatg
ctcatggattcgcaggatcaacattgtaaaaatggctatcttgccaaaag
caatctacagattcaatgcaatccccatcaaaattccaactcagttcttc
aacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacc
taggattgcaaaaagtcttctcaaggataaaagaacctctggtggaatca
ccatgcctgacctaaagctttactacagagcaattgtgataaaaactgca
tggtactggtatagagacagacaagtagaccaatggaatagacttgaaga
cccagaaatgaacccacacacctatggtcacttgatcttcgacaagggag
ctaaaaccatccagtggaagaaagacagcattttcaacaattgggtgctg
gcacaactgggttgtaatcgtgtagaagaatgcgaatgaatccataactt
atctcctgtactaagtcaaatctaagtggaatcaagaacctcacaataaa
acaagagaacactgaaactcataagaagaagaaaggttggggaaaaagct
ttgcaaggattggcacagggaaaatctgacgacagcatggcctggctgta
agaatcgagaaactggaacaaaattgg
gaattctgtctctgagatataccatgacctttctatttattctttaatgt
gtaagcatgcttcttctatcacccttatataaacctcaaggttgggtttg
cattttgcttctgtgctaactcttggtctttcctgcagttacaatgggtt
catgttgttatctgaattcttccctaagaaatatatgaacatgaagagaa
gacactgggagacatgggattcatatcctaaacatcccagaaatttcggg
gaagtcttatctatgaaagtcactagttacctgcagttcctactttaagc
aatgaattgtgaactccatggagcaaagtctcctctattttgagttctag
ttaagccacaagatccaatatgttgaagaaagtttcatacctgagctttt
atctgaacacctttcttccttcctattttcttttctccattccctgcctc
tgtccctctctcccatctccctcccttttttcctctttcatttctttctt
tctcccttttagtaagcttcaatcaaaaagttgaccatgagggcaaaatc
tgtatttggacctctaatatagttcaaatatttctgcagaagttttcatc
ctaaattctgtatgcaaagtatgctttcttgtaaagccacttagggaata
agctcaatggcgtagaaaataatcaccctttgaataacgttatttaatct
aaattgccatgagatggctttctaaaacatattttgtttacaaatgctac
aaagaaaggccagagaatgtgttttcattttagactgctatttctaatag
tgaattcaaaataaagcagcgagaattatctgtaattgctccacttgcag
gctaattctgctatcattttctatttccacagattcttacagaagacctc
actgaacaataaggaattattcttcatgtagattgcaattttagcatggg
aacacaatccatttccagggctctctgatccacattaatgttattccagt
atttcccaaattagaaaagatgaattgtacctctgagacttttgggtcta
gcatctcatagagaatgagatccaccatcaaggtgata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_78425296_78426393
seq2: B6Ng01-206D14.g_69_1156 (reverse)

seq1  TATCACCTTTGATGTGTGATTCTCAATTCTCTAATGAGATGCTAGACCCA  50
      ||||||| |||||| |||  |||| ||||||| |||||||||||||||||
seq2  TATCACC-TTGATG-GTGGATCTC-ATTCTCT-ATGAGATGCTAGACCCA  46

seq1  AAAGTCTCAGAGGTACAATTCATCTTTTTCTAATTTTGGGAAATACTGGA  100
      |||||||||||||||||||||||| |||||||| ||||||||||||||||
seq2  AAAGTCTCAGAGGTACAATTCATC-TTTTCTAA-TTTGGGAAATACTGGA  94

seq1  ATAACATTAATGTGGATCAGAGAGCCCCTGGGAAATGGATTTGTTGTTCC  150
      |||||||||||||||||||||||||||   |||||||||||   ||||||
seq2  ATAACATTAATGTGGATCAGAGAGCCC--TGGAAATGGATT--GTGTTCC  140

seq1  CATGCTAAAATTGCAATCTACATGAAGAATAATTCCTTATTGTTCAGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTAAAATTGCAATCTACATGAAGAATAATTCCTTATTGTTCAGTGA  190

seq1  GGTCTTCTGTAAGAATCTGTGGAAATAGAAAATGATAGCAGAATTAGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTCTGTAAGAATCTGTGGAAATAGAAAATGATAGCAGAATTAGCCT  240

seq1  GCAAGTGGAGCAATTACAGATAATTCTCGCTGCTTTATTTTGAATTCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTGGAGCAATTACAGATAATTCTCGCTGCTTTATTTTGAATTCACT  290

seq1  ATTAGAAATAGCAGTCTAAAATGAAAACACATTCTCTGGCCTTTCTTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAAATAGCAGTCTAAAATGAAAACACATTCTCTGGCCTTTCTTTGT  340

seq1  AGCATTTGTAAACAAAATATGTTTTAGAAAGCCATCTCATGGCAATTTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTGTAAACAAAATATGTTTTAGAAAGCCATCTCATGGCAATTTAG  390

seq1  ATTAAATAACGTTATTCAAAGGGTGATTATTTTCTACGCCATTGAGCTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATAACGTTATTCAAAGGGTGATTATTTTCTACGCCATTGAGCTTA  440

seq1  TTCCCTAAGTGGCTTTACAAGAAAGCATACTTTGCATACAGAATTTAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTAAGTGGCTTTACAAGAAAGCATACTTTGCATACAGAATTTAGGA  490

seq1  TGAAAACTTCTGCAGAAATATTTGAACTATATTAGAGGTCCAAATACAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAACTTCTGCAGAAATATTTGAACTATATTAGAGGTCCAAATACAGA  540

seq1  TTTTGCCCTCATGGTCAACTTTTTGATTGAAGCTTACTAAAAGGGAGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCCCTCATGGTCAACTTTTTGATTGAAGCTTACTAAAAGGGAGAAA  590

seq1  GAAAGAAATGAAAGAGGAAAAAAGGGAGGGAGATGGGAGAGAGGGACAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAATGAAAGAGGAAAAAAGGGAGGGAGATGGGAGAGAGGGACAGA  640

seq1  GGCAGGGAATGGAGAAAAGAAAATAGGAAGGAAGAAAGGTGTTCAGATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGGAATGGAGAAAAGAAAATAGGAAGGAAGAAAGGTGTTCAGATAA  690

seq1  AAGCTCAGGTATGAAACTTTCTTCAACATATTGGATCTTGTGGCTTAACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCAGGTATGAAACTTTCTTCAACATATTGGATCTTGTGGCTTAACT  740

seq1  AGAACTCAAAATAGAGGAGACTTTGCTCCATGGAGTTCACAATTCATTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTCAAAATAGAGGAGACTTTGCTCCATGGAGTTCACAATTCATTGC  790

seq1  TTAAAGTAGGAACTGCAGGTAACTAGTGACTTTCATAGATAAGACTTCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGTAGGAACTGCAGGTAACTAGTGACTTTCATAGATAAGACTTCCC  840

seq1  CGAAATTTCTGGGATGTTTAGGATATGAATCCCATGTCTCCCAGTGTCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAATTTCTGGGATGTTTAGGATATGAATCCCATGTCTCCCAGTGTCTT  890

seq1  CTCTTCATGTTCATATATTTCTTAGGGAAGAATTCAGATAACAACATGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCATGTTCATATATTTCTTAGGGAAGAATTCAGATAACAACATGAA  940

seq1  CCCATTGTAACTGCAGGAAAGACCAAGAGTTAGCACAGAAGCAAAATGCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTGTAACTGCAGGAAAGACCAAGAGTTAGCACAGAAGCAAAATGCA  990

seq1  AACCCAACCTTGAGGTTTATATAAGGGTGATAGAAGAAGCATGCTTACAC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAACCTTGAGGTTTATATAAGGGTGATAGAAGAAGCATGCTTACAC  1040

seq1  ATTAAAGAATAAATAGAAAGGTCATGGTATATCTCAGAGACAGAATTC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGAATAAATAGAAAGGTCATGGTATATCTCAGAGACAGAATTC  1088