BAC Information

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BAC

Clone NameB6Ng01-206O08
Chromosome6 (Build37)
Map Location 102,105,981 - 102,199,937
singlet/doubletdoublet
Overlap geneCntn3, EG666123
Upstream genePdzrn3, EG666084
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-206O08.bB6Ng01-206O08.g
ACCGA026192GA026193
length1,1411,138
definitionB6Ng01-206O08.b B6Ng01-206O08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,105,981 - 102,106,894)(102,198,791 - 102,199,937)
sequence
gaattctttgcattgcaacagtcaggaagcagaatgaatgtttgtgttag
caggctgtcaactttctccttgttattccatctggggccagcagagcaca
ctgctgatggttaaggtggtattttcttccctagtactggcccgttcata
cctgggaataccctcatcgtcacacctggagatgtacttaactaatgatt
caggcatctcccactccaatcaagttcacaagattaaccattacacagag
cacagaagtaaacccagggatctacatacactgattaaccacaaaagtgc
taagaacatggattggagagaggacaggcttctccatacgcagttctgtg
aaaattgtatatgcatctgttgaagaatgaaatcaagttggccctttcct
ctaattacaagcatcaactcaaaacggcttattgccataactataagatt
ggaaactatgaaacttctagaagaaagtatagcagaaatactttaggata
ctggaatgataggttcttttttgaagaataccccctgccattgcaagcac
aaaagaaaaaaaagaaaaaagaaaaaagagagatataaataaataaataa
ataaatcgggaagcttgactccagcaagaaaaacaacaaaataaggagaa
gaactataattgtcaagtgcacatctgataaggatttacatctattgtgt
gtagggagctcaaaagactttattgcaaacaataataacctgatatgaac
taggtaatatgctgaatgaaaagggccctcacaggctcgtctatttgaat
gttattttttttttccatagttggtgtaaatgtttgggaagtattaggag
ccattaccttgctggaagagttgtgtcactggggtgggcgctgaggtctt
aaatgctctgccattcccaattagctttctctctctaccttgataccatc
tcagcatataagtcttagctactgctccagcatcatgcatgctgcacctc
tgccatgccctgccacgtccctgtcatgatggtcatgactttatcctctg
acaagagccccaataaatactttcttctagattctagtcatgaatgtgtc
ttcaatgccataaaaagttgctagagacatacatctgctac

gaattcaaaagatgaaaggcccaaatggtacgggtaaaggaaagtaacta
taatactaattttctaaagacagtctgtgagagacctttgagcccaagag
ggaacaattttgctgagtatgttggggcaaacgtactgtctgccttttta
tttctctaaaacatattttctcacatgctttcatcaatatatgtttgctt
tccttaactgtcactattaatcctgtaataaatacattacaaaaactttt
ctcctacagctaattgtaagcattccatcttgtggaatgtgcactcagaa
aatgctatccaaaatagccttgttattttctgtgcagcagtttaatcatt
gtgatctcatgtgagctcatctccactgagatgtagttcctgacaaaaat
gttcactttagtgtgtttgttaaaactcaaggtgaataaattactgtaat
actccaatcataagccagggaaaacaatattttcagaaattctgcttgct
gtgcagaaggctccatcctttttctatttgaaagcatactgtgctattac
aggtgttcaaatgccaacataaaatgcagttcaatgtttcctagacaaca
gtatacattttgagaaaacagggttttttgtttgtttgttttctttttgt
aagtcctatattcagtgccatccctgaattgcatcatagatcattagagc
agtgtagagcaatcacgtctctttatccaaaactaagcataaactgttca
aagctaaatgaaataactgacctcttactacaaaatgaaagggcaataaa
aaacacacataaaggtgtgctataaaactaatctagacgttaaatgccat
catggttttagttgcacatttttcaaagcaggatgcaatatcacttttca
gaatgttaatctcatctatcttcatttaacttttttttgggttccaaata
cagttatttgttgttatctacattttctgtctacccattctcagaaaaac
ctgtttcccagaagcttagaggcatttcatttataggtgagtggtataaa
atttcactttgagtcttcttgtagggaagcgtgggttattgaggctttct
gttgagaacattactcatcattactgaaattgctattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_102105981_102106894
seq2: B6Ng01-206O08.b_292_1188

seq1  ACAGAGCACAGAAGTAAACCCAGGGATCTACATACACTGATTAACCACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGCACAGAAGTAAACCCAGGGATCTACATACACTGATTAACCACAA  50

seq1  AAGTGCTAAGAACATGGATTGGAGAGAGGACAGGCTTCTCCATACGCAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCTAAGAACATGGATTGGAGAGAGGACAGGCTTCTCCATACGCAGT  100

seq1  TCTGTGAAAATTGTATATGCATCTGTTGAAGAATGAAATCAAGTTGGCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGAAAATTGTATATGCATCTGTTGAAGAATGAAATCAAGTTGGCCC  150

seq1  TTTCCTCTAATTACAAGCATCAACTCAAAACGGCTTATTGCCATAACTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCTAATTACAAGCATCAACTCAAAACGGCTTATTGCCATAACTAT  200

seq1  AAGATTGGAAACTATGAAACTTCTAGAAGAAAGTATAGCAGAAATACTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTGGAAACTATGAAACTTCTAGAAGAAAGTATAGCAGAAATACTTT  250

seq1  AGGATACTGGAATGATAGGTTCTTTTTTGAAGAATACCCCCTGCCATTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATACTGGAATGATAGGTTCTTTTTTGAAGAATACCCCCTGCCATTGC  300

seq1  AAGCACAAAAGAAAAAAAAGAAAAAAGAAAAAAGAGAGATATAAATAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACAAAAGAAAAAAAAGAAAAAAGAAAAAAGAGAGATATAAATAAAT  350

seq1  AAATAAATAAATCGGGAAGCTTGACTCCAGCAAGAAAAACAACAAAATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATAAATCGGGAAGCTTGACTCCAGCAAGAAAAACAACAAAATAA  400

seq1  GGAGAAGAACTATAATTGTCAAGTGCACATCTGATAAGGATTTACATCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAGAACTATAATTGTCAAGTGCACATCTGATAAGGATTTACATCTA  450

seq1  TTGTGTGTAGGGAGCTCAAAAGACTTTATTGCAAACAATAATAACCTGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGTAGGGAGCTCAAAAGACTTTATTGCAAACAATAATAACCTGAT  500

seq1  ATGAACTAGGTAATATGCTGAATGAAAAGGGCCCTCACAGGCTCGTCTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACTAGGTAATATGCTGAATGAAAAGGGCCCTCACAGGCTCGTCTAT  550

seq1  TTGAATGTTATTTTTTTTTTCCATAGTTGGTGTAAATGTTTGGGAAGTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATGTTATTTTTTTTTTCCATAGTTGGTGTAAATGTTTGGGAAGTAT  600

seq1  TAGGAGCCATTACCTTGCTGGAAGAGTTGTGTCACTGGGGTGGGCGCTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGCCATTACCTTGCTGGAAGAGTTGTGTCACTGGGGTGGGCGCTGA  650

seq1  GGTCTTAAATGCTCTGCCATTCCCAATTAGCTTTCTCTCTCTACCTTGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTAAATGCTCTGCCATTCCCAATTAGCTTTCTCTCTCTACCTTGAT  700

seq1  ACCATCTCAGCATATAAGGTCTTAGCTACTGCTCCAGCATCATGCATGCC  750
      ||||||||||||||||| |||||||||||||||||||||||||||||| |
seq2  ACCATCTCAGCATATAA-GTCTTAGCTACTGCTCCAGCATCATGCATG-C  748

seq1  TGCCACCCTCCTGCCATGCCCCTGCCACGTCCCTGTCATGATGGTCATGG  800
      || ||||   |||||||| ||||||||||||||||||||||||||||| |
seq2  TG-CACC--TCTGCCATG-CCCTGCCACGTCCCTGTCATGATGGTCAT-G  793

seq1  ACTTTATCCCTCTGGAACCAAGAGCCCCAATAAATACTTTCTTTCCTAAG  850
      ||||||| ||||||    |||||||||||||||||||||||||  || ||
seq2  ACTTTAT-CCTCTG---ACAAGAGCCCCAATAAATACTTTCTT--CT-AG  836

seq1  ATTTCCTAGTCATG-ATGTGTCTTCATAGCAATAAAAAGTGGCTAAGAGA  899
      |||  ||||||||| |||||||||||  || ||||||||| ||| |||||
seq2  ATT--CTAGTCATGAATGTGTCTTCAATGCCATAAAAAGTTGCT-AGAGA  883

seq1  CATACATCTTGCTAC  914
      |||||||| ||||||
seq2  CATACATC-TGCTAC  897


seq1: chr6_102198791_102199937
seq2: B6Ng01-206O08.g_69_1206 (reverse)

seq1  AAATAAACAATATTCAGTAAATGGATGGAGTAATTGTTTCTCAACAGAAA  50
      |||| | |||| ||||||||   ||| |||||||   |||||||||||||
seq2  AAAT-AGCAAT-TTCAGTAA--TGAT-GAGTAAT--GTTCTCAACAGAAA  43

seq1  CCCTTCAATAACCCACGCTTCCCTACA--GAGACTCAAAGTGAAAATTTT  98
       || |||||||||||||||||||||||   |||||||||||| |||||||
seq2  GCC-TCAATAACCCACGCTTCCCTACAAGAAGACTCAAAGTG-AAATTTT  91

seq1  ATACCACTTCACTATAAATGAAATTGCCTTCTAAGCTTTCTGGG-AACAG  147
      ||||||||   |||||||||||| |||| ||||||| ||||||| |||||
seq2  ATACCACTCACCTATAAATGAAA-TGCC-TCTAAGC-TTCTGGGAAACAG  138

seq1  GTTTTTCTGAGAATGGGTAGGACAGAAAATGTAGATAACAACAAATAACT  197
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GTTTTTCTGAGAATGGGTA-GACAGAAAATGTAGATAACAACAAATAACT  187

seq1  GTATTTGGAA-CCAAAAAAAAGTTAAATGAAGATAGATGAGATTAACATT  246
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GTATTTGGAACCCAAAAAAAAGTTAAATGAAGATAGATGAGATTAACATT  237

seq1  CTGAAAAGTGATATTGCATCCTGCTTTGAAAAATGTGCAACTAAAACCAT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAAGTGATATTGCATCCTGCTTTGAAAAATGTGCAACTAAAACCAT  287

seq1  GATGGCATTTAACGTCTAGATTAGTTTTATAGCACACCTTTATGTGTGTT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCATTTAACGTCTAGATTAGTTTTATAGCACACCTTTATGTGTGTT  337

seq1  TTTTATTGCCCTTTCATTTTGTAGTAAGAGGTCAGTTATTTCATTTAGCT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTGCCCTTTCATTTTGTAGTAAGAGGTCAGTTATTTCATTTAGCT  387

seq1  TTGAACAGTTTATGCTTAGTTTTGGATAAAGAGACGTGATTGCTCTACAC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACAGTTTATGCTTAGTTTTGGATAAAGAGACGTGATTGCTCTACAC  437

seq1  TGCTCTAATGATCTATGATGCAATTCAGGGATGGCACTGAATATAGGACT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTAATGATCTATGATGCAATTCAGGGATGGCACTGAATATAGGACT  487

seq1  TACAAAAAGAAAACAAACAAACAAAAAACCCTGTTTTCTCAAAATGTATA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAAAGAAAACAAACAAACAAAAAACCCTGTTTTCTCAAAATGTATA  537

seq1  CTGTTGTCTAGGAAACATTGAACTGCATTTTATGTTGGCATTTGAACACC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGTCTAGGAAACATTGAACTGCATTTTATGTTGGCATTTGAACACC  587

seq1  TGTAATAGCACAGTATGCTTTCAAATAGAAAAAGGATGGAGCCTTCTGCA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATAGCACAGTATGCTTTCAAATAGAAAAAGGATGGAGCCTTCTGCA  637

seq1  CAGCAAGCAGAATTTCTGAAAATATTGTTTTCCCTGGCTTATGATTGGAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAGCAGAATTTCTGAAAATATTGTTTTCCCTGGCTTATGATTGGAG  687

seq1  TATTACAGTAATTTATTCACCTTGAGTTTTAACAAACACACTAAAGTGAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACAGTAATTTATTCACCTTGAGTTTTAACAAACACACTAAAGTGAA  737

seq1  CATTTTTGTCAGGAACTACATCTCAGTGGAGATGAGCTCACATGAGATCA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTGTCAGGAACTACATCTCAGTGGAGATGAGCTCACATGAGATCA  787

seq1  CAATGATTAAACTGCTGCACAGAAAATAACAAGGCTATTTTGGATAGCAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGATTAAACTGCTGCACAGAAAATAACAAGGCTATTTTGGATAGCAT  837

seq1  TTTCTGAGTGCACATTCCACAAGATGGAATGCTTACAATTAGCTGTAGGA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAGTGCACATTCCACAAGATGGAATGCTTACAATTAGCTGTAGGA  887

seq1  GAAAAGTTTTTGTAATGTATTTATTACAGGATTAATAGTGACAGTTAAGG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTTTTTGTAATGTATTTATTACAGGATTAATAGTGACAGTTAAGG  937

seq1  AAAGCAAACATATATTGATGAAAGCATGTGAGAAAATATGTTTTAGAGAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAAACATATATTGATGAAAGCATGTGAGAAAATATGTTTTAGAGAA  987

seq1  ATAAAAAGGCAGACAGTACGTTTGCCCCAACATACTCAGCAAAATTGTTC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAGGCAGACAGTACGTTTGCCCCAACATACTCAGCAAAATTGTTC  1037

seq1  CCTCTTGGGCTCAAAGGTCTCTCACAGACTGTCTTTAGAAAATTAGTATT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTGGGCTCAAAGGTCTCTCACAGACTGTCTTTAGAAAATTAGTATT  1087

seq1  ATAGTTACTTTCCTTTACCCGTACCATTTGGGCCTTTCATCTTTTGAATT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTACTTTCCTTTACCCGTACCATTTGGGCCTTTCATCTTTTGAATT  1137

seq1  C  1147
      |
seq2  C  1138


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