BAC Information

Click to search

BAC

Clone NameB6Ng01-207C06
Chromosome6 (Build37)
Map Location 119,146,429 - 119,344,543
singlet/doubletdoublet
Overlap geneDcp1b, Cacna2d4, Lrtm2, Adipor2
Upstream geneRet, 1700069P05Rik, Bms1, Zfp248, Zfp9, Ankrd26, Cacna1c
Downstream geneWnt5b, Fbxl14, Erc1, LOC666887, Rad52, Wnk1, EG406236, Ninj2, B4galnt3, Ccdc77, Jarid1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-207C06.bB6Ng01-207C06.g
ACCGA026373GA026374
length1,095858
definitionB6Ng01-207C06.b B6Ng01-207C06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,146,429 - 119,147,504)(119,343,693 - 119,344,543)
sequence
gaattctgaaagcactcctcctttcttggttcttctctgctgcatcatca
ttctgactttgctgctgtggtcagacctatgcggagacaagcccttcccc
agtggagcccttggatggaaatgtgaaccaaatggcttctgtcagcctgt
cagttcgtcacctcctgaaggcttgatgagctctggtctttgtatatcag
cacaggctgtctggcacagcctcttgtgtggaagggtgataggcctggtc
aaggtgggggcctgggcccacgacacagacgactcgagctggaatgtgta
cttccgtggattcacggtgctgctgatctacaaaactattttaaggagag
aaagtgcaggcccagtcctctatcttggtgctccttttagtagccaggaa
tgctgggaactgtgtgctttcgctgtccctctccctgcctatttaagcct
tatgttcaagctaaatattaactagataaaaagagctgtttcagatgatc
ccgtgtgaatgttaaaaaccatattgcctcatagataaatctccatgagg
ttctaaataacaatggcaaacccgtgtttcttcattctgctttaacactt
gagagttttctcttgtttttctgccctgaacctgtgtgtcagcatctcat
gataatgaagatgtcaaaaggcgcttgttcgtgccaacagctccttggca
tccggcccttacagaactcgagttccttatgtccgatgtcacacaggagg
aagaatgacacccaaatgcttgttagtgtagtttcctggtaagacaccca
gtggtgtctgccgctgggcttcagtgtctggttgcactataggttctttg
accctgcattttgggaaaactaagtctccaaagaaaggaaagttttcact
gtggtcgaatcgtccagagcacctattgtgactaagacaaaacaaatcca
aaaaaaaaaaaacaaacaacaatataaaaaatcaacttcagcccacactt
agattcttcgcagggctggagtggctgggcaatccagccctgaactttac
agaaacagagaggtcagggaagcctggtgggggaagcaatgtggg
gaattccctgacttacagaggggtgtggtttattggatgcaaggcatata
cacctcaatgaagcctttttaagactgtgttgtttcattttgttttttag
attcttttaaaaactacatttatctttgtgtgtctgtctgtatgtgtgtg
agtgtgcttatgtggaggtcagaggccaacttgccagtttgttttttcct
tccatcccatcccttgagtcctggggattgggttcagcttgtcgggctta
ggggcaaataaatgcctttacccactagcccatctctctagttccgtttt
ttgagctttttctttgtttgtttgttttgagctttttttttttttttttt
aatttttaaacagggtctctctttgtagtcttggctgtttcggaactcac
tctgtggcctcaaactcacagagaactgcctgcctctgtctcccgagtgc
tgggattaaaggtgtgtgccaccatgcctggctattgagatttttaagac
aggtctcaatgtgtatctcaggtaagccttaaacttgataggtagacagg
ctggctttgaattccagaatttctacctaaaccctttcactctgaaatta
cagatgtatctgatgaataaagcttttcctttccttttggtgatagaaag
agaaggcagtttattaaaaaaaaaaaaagtgtttacaaggtacttcaaag
ggtgaaagtgggataaggggaccagggatgatagatgctcagaagcagga
caaggggaccaggaggatagatgctcaaaaatcgggacaaggggatcagg
gggatagatgctcaaaatcggtgacaaaggggacctaggatgatagtatg
ctccagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_119146429_119147504
seq2: B6Ng01-207C06.b_45_1139

seq1  GAATTCTGAAAGCACTCCTCCTTTCTTGGTTCTTCTCTGCTGCATCATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAAAGCACTCCTCCTTTCTTGGTTCTTCTCTGCTGCATCATCA  50

seq1  TTCTGACTTTGCTGCTGTGGTCAGACCTATGCGGAGACAAGCCCTTCCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGACTTTGCTGCTGTGGTCAGACCTATGCGGAGACAAGCCCTTCCCC  100

seq1  AGTGGAGCCCTTGGATGGAAATGTGAACCAAATGGCTTCTGTCAGCCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAGCCCTTGGATGGAAATGTGAACCAAATGGCTTCTGTCAGCCTGT  150

seq1  CAGTTCGTCACCTCCTGAAGGCTTGATGAGCTCTGGTCTTTGTATATCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCGTCACCTCCTGAAGGCTTGATGAGCTCTGGTCTTTGTATATCAG  200

seq1  CACAGGCTGTCTGGCACAGCCTCTTGTGTGGAAGGGTGATAGGCCTGGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGCTGTCTGGCACAGCCTCTTGTGTGGAAGGGTGATAGGCCTGGTC  250

seq1  AAGGTGGGGGCCTGGGCCCACGACACAGACGACTCGAGCTGGAATGTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGGGGGCCTGGGCCCACGACACAGACGACTCGAGCTGGAATGTGTA  300

seq1  CTTCCGTGGATTCACGGTGCTGCTGATCTACAAAACTATTTTAAGGAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCGTGGATTCACGGTGCTGCTGATCTACAAAACTATTTTAAGGAGAG  350

seq1  AAAGTGCAGGCCCAGTCCTCTATCTTGGTGCTCCTTTTAGTAGCCAGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGCAGGCCCAGTCCTCTATCTTGGTGCTCCTTTTAGTAGCCAGGAA  400

seq1  TGCTGGGAACTGTGTGCTTTCGCTGTCCCTCTCCCTGCCTATTTAAGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGAACTGTGTGCTTTCGCTGTCCCTCTCCCTGCCTATTTAAGCCT  450

seq1  TATGTTCAAGCTAAATATTAACTAGATAAAAAGAGCTGTTTCAGATGATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTCAAGCTAAATATTAACTAGATAAAAAGAGCTGTTTCAGATGATC  500

seq1  CCGTGTGAATGTTAAAAACCATATTGCCTCATAGATAAATCTCCATGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGTGAATGTTAAAAACCATATTGCCTCATAGATAAATCTCCATGAGG  550

seq1  TTCTAAATAACAATGGCAAACCCGTGTTTCTTCATTCTGCTTTAACACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAATAACAATGGCAAACCCGTGTTTCTTCATTCTGCTTTAACACTT  600

seq1  GAGAGTTTTCTCTTGTTTTTCTGCCCTGAACCTGTGTGTCAGCATCTCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTTTTCTCTTGTTTTTCTGCCCTGAACCTGTGTGTCAGCATCTCAT  650

seq1  GATAATGAAGATGTCAAAAGGCGCTTGTTCGTGCCAACAGCTCCTTGGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATGAAGATGTCAAAAGGCGCTTGTTCGTGCCAACAGCTCCTTGGCA  700

seq1  TCCGGCCCTTACAGAACTCGAGTTCCTTATGTCCGATGTCACACAGGAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGCCCTTACAGAACTCGAGTTCCTTATGTCCGATGTCACACAGGAGG  750

seq1  AAGAATGACACCCAAATGCTTGTTAGTGTAGTTTCCTGGTAAGACACCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATGACACCCAAATGCTTGTTAGTGTAGTTTCCTGGTAAGACACCCA  800

seq1  GTGGTGTCTGCCGCTGGGCTTCAGTGTCTGGTTGCACTATAGGTTC-TTG  849
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GTGGTGTCTGCCGCTGGGCTTCAGTGTCTGGTTGCACTATAGGTTCTTTG  850

seq1  A-CCTGCCATTTTGGAAAACTAAGTCTCCAAAG-AAGGAAAGTTTTCACT  897
      | |||||  ||| |||||||||||||||||||| ||||||||||||||||
seq2  ACCCTGCATTTTGGGAAAACTAAGTCTCCAAAGAAAGGAAAGTTTTCACT  900

seq1  GTGGTCGAATCGTCCAGAGCACCTATTGTGACTAAGACAAAACAAATCC-  946
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GTGGTCGAATCGTCCAGAGCACCTATTGTGACTAAGACAAAACAAATCCA  950

seq1  -AAAAAAAAAAACAAACAAACAAACAAAAAAACAAC-TCAG-CCACACTT  993
       ||||||||||||||||||  | | |||||| |||| |||| ||||||||
seq2  AAAAAAAAAAAACAAACAACAATATAAAAAATCAACTTCAGCCCACACTT  1000

seq1  AGATTCTTCGCAGGGCT-GAGT-GCT-GGCAATCCAG-CCTG-ACCTTAC  1038
      ||||||||||||||||| |||| ||| |||||||||| |||| || ||||
seq2  AGATTCTTCGCAGGGCTGGAGTGGCTGGGCAATCCAGCCCTGAACTTTAC  1050

seq1  AAGAAC--AGAGGCCAGG--AGCCTG--TGGGGAAGCAA-GTGGG  1076
      |  |||  ||||| ||||  ||||||   |||||||||| |||||
seq2  AGAAACAGAGAGGTCAGGGAAGCCTGGTGGGGGAAGCAATGTGGG  1095

seq1: chr6_119343693_119344543
seq2: B6Ng01-207C06.g_69_926 (reverse)

seq1  TTCT-GAGCAT-CTATCCTCCT-GGTCCCC-TTGTC-CCGCTTCTGAGCA  45
      |||| |||||| ||||| |||| ||||||| ||||| ||| || ||||||
seq2  TTCTGGAGCATACTATCATCCTAGGTCCCCTTTGTCACCGATTTTGAGCA  50

seq1  TCTATCCCCCTGATCCCCTTGTCCCG-CTTCTGAGCATCTATCCTCCTGG  94
      ||||||||||||||||||||||||||  || |||||||||||||||||||
seq2  TCTATCCCCCTGATCCCCTTGTCCCGATTTTTGAGCATCTATCCTCCTGG  100

seq1  TCCCCTTGTCCTGCTTCTGAGCATCTATCCT-CCTGGTCCCCTTATCCCA  143
      ||||||||||||||||||||||||||||| | ||||||||||||||||||
seq2  TCCCCTTGTCCTGCTTCTGAGCATCTATCATCCCTGGTCCCCTTATCCCA  150

seq1  CTTTCACCCTTTGAAGTACCTTGTAAACACTTTTTTTTTTTTTAATAAAC  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCACCCTTTGAAGTACCTTGTAAACACTTTTTTTTTTTTTAATAAAC  200

seq1  TGCCTTCTCTTTCTATCACCAAAAGGAAAGGAAAAGCTTTATTCATCAGA  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTCTCTTTCTATCACCAAAAGGAAAGGAAAAGCTTTATTCATCAGA  250

seq1  TACATCTGTAATTTCAGAGTGAAAGGGTTTAGGTAGAAATTCTGGAATTC  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCTGTAATTTCAGAGTGAAAGGGTTTAGGTAGAAATTCTGGAATTC  300

seq1  AAAGCCAGCCTGTCTACCTATCAAGTTTAAGGCTTACCTGAGATACACAT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCAGCCTGTCTACCTATCAAGTTTAAGGCTTACCTGAGATACACAT  350

seq1  TGAGACCTGTCTTAAAAATCTCAATAGCCAGGCATGGTGGCACACACCTT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACCTGTCTTAAAAATCTCAATAGCCAGGCATGGTGGCACACACCTT  400

seq1  TAATCCCAGCACTCGGGAGACAGAGGCAGGCAGTTCTCTGTGAGTTTGAG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCCAGCACTCGGGAGACAGAGGCAGGCAGTTCTCTGTGAGTTTGAG  450

seq1  GCCACAGAGTGAGTTCCGAAACAGCCAAGACTACAAAGAGAGACCCTGTT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACAGAGTGAGTTCCGAAACAGCCAAGACTACAAAGAGAGACCCTGTT  500

seq1  TAAAAATTAAAAAAAAAAAAAAAAAAGCTCAAAACAAACAAACAAAGAAA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATTAAAAAAAAAAAAAAAAAAGCTCAAAACAAACAAACAAAGAAA  550

seq1  AAGCTCAAAAAACGGAACTAGAGAGATGGGCTAGTGGGTAAAGGCATTTA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCAAAAAACGGAACTAGAGAGATGGGCTAGTGGGTAAAGGCATTTA  600

seq1  TTTGCCCCTAAGCCCGACAAGCTGAACCCAATCCCCAGGACTCAAGGGAT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCCCTAAGCCCGACAAGCTGAACCCAATCCCCAGGACTCAAGGGAT  650

seq1  GGGATGGAAGGAAAAAACAAACTGGCAAGTTGGCCTCTGACCTCCACATA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGGAAGGAAAAAACAAACTGGCAAGTTGGCCTCTGACCTCCACATA  700

seq1  AGCACACTCACACACATACAGACAGACACACAAAGATAAATGTAGTTTTT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACACTCACACACATACAGACAGACACACAAAGATAAATGTAGTTTTT  750

seq1  AAAAGAATCTAAAAAACAAAATGAAACAACACAGTCTTAAAAAGGCTTCA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAATCTAAAAAACAAAATGAAACAACACAGTCTTAAAAAGGCTTCA  800

seq1  TTGAGGTGTATATGCCTTGCATCCAATAAACCACACCCCTCTGTAAGTCA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGTGTATATGCCTTGCATCCAATAAACCACACCCCTCTGTAAGTCA  850

seq1  GGGAATTC  851
      ||||||||
seq2  GGGAATTC  858