BAC Information

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BAC

Clone NameB6Ng01-207J13
Chromosome6 (Build37)
Map Location 38,417,701 - 38,557,536
singlet/doubletdoublet
Overlap geneD130059P03Rik, 3110054G05Rik, 1110001J03Rik, LOC621228, Luc7l2
Upstream geneAkr1d1, LOC665046, Ybx1-ps2, LOC100039636, LOC665102, Trim24, Svopl, Atp6v0a4, LOC100039657, D630002J15Rik, D630045J12Rik, LOC665125, Zc3hav1l, Zc3hav1, Rpl30-ps1, Ttc26
Downstream geneKlrg2, LOC665180, Hipk2, Tbxas1, 1700025N23Rik, Parp12, 4930599N23Rik, A630082K20Rik, Slc37a3, Rab19, Mkrn1, ENSMUSG00000068601, Dennd2a, Adck2, Ndufb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-207J13.bB6Ng01-207J13.g
ACCGA026700GA026701
length1,031736
definitionB6Ng01-207J13.b B6Ng01-207J13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,556,528 - 38,557,536)(38,417,701 - 38,418,429)
sequence
gaattcattaaaccaaaatgtaaagtatcaaaaaatgatcacactataat
aaaattctgccgggcatggtggcgcacgcctttagtcccagcacttggga
ggcagaggcaggcggatttctgagttcgagccagtctggtctacaaagtg
agttccaggacagccagggctacacagagaaaccctgtctcgaaaaacca
aaaagagataataaaattctaactgttcctagtactactatcttcattct
aaccccatcttcaaagatatataaacaaaacaccctcagatatgcaacca
ggaaaaaaacaaaacagaaacacattatgtagaacctaactatattggtt
agcatagaatatatacttttcaacacctaaaatgaattaacaacaaatat
cacatttatttagttctttacaggtggtacagaatgtttatacataattt
atctcaatcaaggttagaattataatcagaggcactgccaagtcctgcat
aatacttatttttttttaaagttggagtttaaagttggatctcaatatgc
tatgtttgcatgctactaacccagaaaacacaatactttcagaaaaacat
aaggcaagataaaaaatactactataaccagtttgaaaaatatagataag
gagagtattatagtttgaatataaaacagtccaaaaggctcatgtactgt
tgaagacttgaaactggtgatggtgctacagataaaggtggctagctcat
aaagatggtacaaccgctgaatttaacccactgtaagttcatagctaaac
agccattaggaggtggtttctgggcaggaggaaacaggtcaaggaggggt
ctatttttattataaacttctacctggttctttgttctctatggccatgg
tgttctgggttaggcgatgggccccagaaaacaattcaaaaagtgggccc
atgagccgggcggtggtggtacacggccttttaaatcccagcacttgggg
aagcagaaggcggggccggatttcctgagtt
gaattcttcatgtctttgaaatatgaggatggtgctttttcttcaagtga
tgaaaatttatctttggcttgaacatttgcatctgcctgataaacacttt
cttgctgttcatatttactttgcaatgaataaatatcctttcaggctgaa
ccttttgacttgagttctttctctctctctctctctctctctctctctct
ctttctctctctctttcttccaagtttcattttcattctggctttctttg
tacatttcctccctccacatgcctaatctacgttctgtctgagaagcagg
tcctggaaatttgccttttctacctaaagcatgtgaaattgtcagatagg
ttggtagcgtggcacaggtgccctggtgtatcagctctatccagtcagtg
tgctctcagacttgagctgcgcctctgacttcctcactctgttgtgctgt
gagggatcatgccggagtttccaccttagaaactcttttgcgtctcacct
ggttaagaggaactacaatgatggcaatattgtcctcaaactcatgtaaa
tagtttgtgctggttccttgataattatcttgggtttttttttttctttt
aagatttatttatttatgtatatgagtacatttgttcgtgttgttgtctt
tcagacacaccagaagagtgcatttggatcacatttacagatgggtttga
gcctcccttgtggttgcttggaagctgaactcagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_38556528_38557536
seq2: B6Ng01-207J13.b_47_1077 (reverse)

seq1  AACTCA-GAAATCCG--CCCGCC-TCTGCCT-CCCAAGTGCTGGGATT--  43
      |||||| ||||||||  |||||| ||||| | ||||||||||||||||  
seq2  AACTCAGGAAATCCGGCCCCGCCTTCTGCTTCCCCAAGTGCTGGGATTTA  50

seq1  AAAGG-CGTGTACCACCA-CGCCCGGCTCATGG--CCAC-TTTTGAATTG  88
      ||||| |||||||||||| ||||||||||||||  |||| ||||||||||
seq2  AAAGGCCGTGTACCACCACCGCCCGGCTCATGGGCCCACTTTTTGAATTG  100

seq1  -TTTCT-GGGCCCAT-GCCTAA-CCAGAACACCATGG-CATAGAGAACAA  133
       ||||| |||||||| |||||| |||||||||||||| ||||||||||||
seq2  TTTTCTGGGGCCCATCGCCTAACCCAGAACACCATGGCCATAGAGAACAA  150

seq1  AGAACCAGGTAGAAG-TTATAAT-AAAATAGACCCCT-CTTGACCTGTTT  180
      ||||||||||||||| ||||||| ||||||||||||| ||||||||||||
seq2  AGAACCAGGTAGAAGTTTATAATAAAAATAGACCCCTCCTTGACCTGTTT  200

seq1  CCTCCTG-CCAGAAACCACCTCCTAATGGCTGTTTAGCTATGAACTTACA  229
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTGCCCAGAAACCACCTCCTAATGGCTGTTTAGCTATGAACTTACA  250

seq1  GTGGGTT-AATTCAGCGGTTGTACCATCTTTATGAGCTAGCCACCTTTAT  278
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTTAAATTCAGCGGTTGTACCATCTTTATGAGCTAGCCACCTTTAT  300

seq1  CTGTAGCACCATCACCAGTTTCAAGTCTTCAACAGTACATGAGCCTTTTG  328
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGCACCATCACCAGTTTCAAGTCTTCAACAGTACATGAGCCTTTTG  350

seq1  GACTGTTTTATATTCAAACTATAATACTCTCCTTATCTATATTTTTCAAA  378
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTTTTATATTCAAACTATAATACTCTCCTTATCTATATTTTTCAAA  400

seq1  CTGGTTATAGTAGTATTTTTTATCTTGCCTTATGTTTTTCTGAAAGTATT  428
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTATAGTAGTATTTTTTATCTTGCCTTATGTTTTTCTGAAAGTATT  450

seq1  GTGTTTTCTGGGTTAGTAGCATGCAAACATAGCATATTGAGATCCAACTT  478
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTCTGGGTTAGTAGCATGCAAACATAGCATATTGAGATCCAACTT  500

seq1  TAAACTCCAACTTTAAAAAAAAATAAGTATTATGCAGGACTTGGCAGTGC  528
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTCCAACTTTAAAAAAAAATAAGTATTATGCAGGACTTGGCAGTGC  550

seq1  CTCTGATTATAATTCTAACCTTGATTGAGATAAATTATGTATAAACATTC  578
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGATTATAATTCTAACCTTGATTGAGATAAATTATGTATAAACATTC  600

seq1  TGTACCACCTGTAAAGAACTAAATAAATGTGATATTTGTTGTTAATTCAT  628
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCACCTGTAAAGAACTAAATAAATGTGATATTTGTTGTTAATTCAT  650

seq1  TTTAGGTGTTGAAAAGTATATATTCTATGCTAACCAATATAGTTAGGTTC  678
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGTGTTGAAAAGTATATATTCTATGCTAACCAATATAGTTAGGTTC  700

seq1  TACATAATGTGTTTCTGTTTTGTTTTTTTCCTGGTTGCATATCTGAGGGT  728
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAATGTGTTTCTGTTTTGTTTTTTTCCTGGTTGCATATCTGAGGGT  750

seq1  GTTTTGTTTATATATCTTTGAAGATGGGGTTAGAATGAAGATAGTAGTAC  778
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTTATATATCTTTGAAGATGGGGTTAGAATGAAGATAGTAGTAC  800

seq1  TAGGAACAGTTAGAATTTTATTATCTCTTTTTGGTTTTTCGAGACAGGGT  828
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAACAGTTAGAATTTTATTATCTCTTTTTGGTTTTTCGAGACAGGGT  850

seq1  TTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGACTG  878
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGACTG  900

seq1  GCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGACTAA  928
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGACTAA  950

seq1  AGGCGTGCGCCACCATGCCCGGCAGAATTTTATTATAGTGTGATCATTTT  978
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGTGCGCCACCATGCCCGGCAGAATTTTATTATAGTGTGATCATTTT  1000

seq1  TTGATACTTTACATTTTGGTTTAATGAATTC  1009
      |||||||||||||||||||||||||||||||
seq2  TTGATACTTTACATTTTGGTTTAATGAATTC  1031

seq1: chr6_38417701_38418429
seq2: B6Ng01-207J13.g_68_803

seq1  GAATTCTTCATGTCTTTGAAATATGAGGATGGTGCTTTTTCTTCAAGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCATGTCTTTGAAATATGAGGATGGTGCTTTTTCTTCAAGTGA  50

seq1  TGAAAATTTATCTTTGGCTTGAACATTTGCATCTGCCTGATAAACACTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATTTATCTTTGGCTTGAACATTTGCATCTGCCTGATAAACACTTT  100

seq1  CTTGCTGTTCATATTTACTTTGCAATGAATAAATATCCTTTCAGGCTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTGTTCATATTTACTTTGCAATGAATAAATATCCTTTCAGGCTGAA  150

seq1  CCTTTTGACTTGAGTTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTGACTTGAGTTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  200

seq1  CTTTCTCTCTCTCTTTCTTCCAAGTTTCATTTTCATTCTGGCTTTCTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCTCTCTCTTTCTTCCAAGTTTCATTTTCATTCTGGCTTTCTTTG  250

seq1  TACATTTCCTCCCTCCACATGCCTAATCTACGTTCTGTCTGAGAAGCAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTCCTCCCTCCACATGCCTAATCTACGTTCTGTCTGAGAAGCAGG  300

seq1  TCCTGGAAATTTGCCTTTTCTACCTAAAGCATGTGAAATTGTCAGATAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGAAATTTGCCTTTTCTACCTAAAGCATGTGAAATTGTCAGATAGG  350

seq1  TTGGTAGCGTGGCACAGGTGCCCTGGTGTATCAGCTCTATCCAGTCAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTAGCGTGGCACAGGTGCCCTGGTGTATCAGCTCTATCCAGTCAGTG  400

seq1  TGCTCTCAGACTTGAGCTGCGCCTCTGACTTCCTCACTCTGTTGTGCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTCAGACTTGAGCTGCGCCTCTGACTTCCTCACTCTGTTGTGCTGT  450

seq1  GAGGGATCATGCCGGAGTTTCCACCTTAGAAACTCTTTTGCGTCTCACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGATCATGCCGGAGTTTCCACCTTAGAAACTCTTTTGCGTCTCACCT  500

seq1  GGTTAAGAGGAACTACAATGATGGCAATATTGTCCTCAAACTCATGTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAAGAGGAACTACAATGATGGCAATATTGTCCTCAAACTCATGTAAA  550

seq1  TAGTTTGTGCTGGTTCCTTGATAATTATCTTGGGTTTTTTTTTTTCTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTGTGCTGGTTCCTTGATAATTATCTTGGGTTTTTTTTTTTCTTTT  600

seq1  AAGATTTATTTATTTATGTATATGAGTACA-TTGTTCGTGTTGTTGTC-T  648
      |||||||||||||||||||||||||||||| ||||||||||||||||| |
seq2  AAGATTTATTTATTTATGTATATGAGTACATTTGTTCGTGTTGTTGTCTT  650

seq1  TCAGACACACCAGAAGAGTGCA-TTGGATCACA-TTACAGAT-GGTTTGA  695
      |||||||||||||||||||||| |||||||||| |||||||| |||||||
seq2  TCAGACACACCAGAAGAGTGCATTTGGATCACATTTACAGATGGGTTTGA  700

seq1  GCC-ACCTTGTGGTTGC-TGGAAGCTGAACTCAGGA  729
      |||  |||||||||||| ||||||||||||||||||
seq2  GCCTCCCTTGTGGTTGCTTGGAAGCTGAACTCAGGA  736