BAC Information

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BAC

Clone NameB6Ng01-208D02
Chromosome6 (Build37)
Map Location 102,726,193 - 102,726,860
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666084, Cntn3, EG666123
Downstream geneChl1, LOC666141
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-208D02.bB6Ng01-208D02.g
ACCGA027136GA027137
length1,2151,128
definitionB6Ng01-208D02.b B6Ng01-208D02.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcagtatttcattcttaccaatggacaggtcatttaaacagaaact
aaacagagacctttaaactaaaagaagttatggaccaaatggatttaaca
gacatttacagaacatttcaccccaaattaaaaaaacaagccttcttctc
agcacctcacagaaccttctccaaaactgatcatatacacagacacaaaa
taaacctcaacaaatgcacgaagattgaaataattctttgcatcctatca
gatcaccaaggactaagcctggacttcaataacaacaaaaacagcagaaa
actcacatacccatgaaaactgaacaattctctactcaatgataatttgg
ttagagagaaatacagaaagaaagattttctagaatgcaatgaaaatgaa
ggcacaacatacccaaactaatgggacacagagaattcacaatagaagac
tctcgaatggccaagaagcacttaaagaaatgtctaacatccttagtcat
cagtgaaacataaaactataagatattgagattcaaccctataccacaca
gtactgttaaattaaaaaactcaagtgacagcacccactgtcaaggatgt
agagaaagggtaatactcctccattggtggtgggactgcaaactggtaca
accactctggaaattactctggccattcctcagaaaattggaagtagttc
tacctgaagacacaactatattgctcttgggcatatacccaaatgatgat
ccatcatacagcaaggacatgtgctccactatgtttgtagcaccctatcc
ctaatagctagaaactggaagcaacccagatgtccctcgactgaagaatg
gatacagaaaatacagaaagttgatacagaaaatggatacagctattaaa
aatgaggacatcatgaattttgcagaaaagtggatggaaatagaaaatat
cattcagaatgatgtaacccagaccttaaggacatgcatggtatgtactc
actgataagtggatattagctgtaaagtacaataacacccatgaaaataa
cccacagaccttatgagttagctagaggagacttcaagtagataacttta
tcccacttagaagggagaacaaatatcttggggaggcagatggagtagta
actggcttagaatgggcagcagggtagaaccaaagtgtggctacgggtct
ctcgttctactgatg

gaattcaataggatgatttgttttcaattgattatttctttttattttgt
tttatagacattctgtgcagtctctgtataaatatgtgtctaatttgggt
atccacatactgtgcttactcaaattcttaaggtttgtttgtcaatccca
tgttttccctctaatatagacaaagtcaatattgacagttttttaaggcc
ccatgccttctgtgttttgcctatgtactttgcatagccaagtgaaaata
ttaatgcctagaagttttatcaattatcttttacatgtagaactaagact
gatcttgaattcactcctttttagtgtgagagcaatataccaatctgatc
tagaagcacttgttcagaaaaacatatctttccccagggaaactaatggg
tcatacaaggtggaacagttagatagatagatagatagatagatagatag
atagatagatagatagatagatagatatccgatcttgttaatcaaattgc
cattccttagatcaatagctcagccttagtttttgttcatcttttttcat
ttcttgtgggtttacccttcctcagaggttgttattcacttgtccacaag
ggtgagaggagcagagttgggggcagggtttggacagcagtgaatataat
ggaatggctttcaggaacagactgcttcagtaagacagctcaactttatt
tgggatgaataagggctaggtagaccttggggaatgggtagacatttcta
ggtgggaaactttattggatggagttgaggtactggaaatatttcattta
catgaagaagaattccaagaaactacttgggtggttcttattggagaatt
agaggtttagccctgtaatttggccaaagactatgtgactgtcctcagaa
gcaaggccaggtagaggtcatgggcaaggttatataggctgagagcaaga
gagagtagccccttactccccccagtctcagataaaattctgggggttgg
ggtacctctcatctgactaatgctcagccagctccccttgtcaacatgcc
cttcagtattattttcaaaactgatttttttgttctaggccttgctgtct
gggaatccactctgtagaacaggctggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_102726193_102726860
seq2: B6Ng01-208D02.g_531_1193 (reverse)

seq1  GCCAGCCTGGTCTACAGAGTGAATTCCAGGACAGCAAGGGCTAGACAAAA  50
      ||||||||| ||||||||||| |||||  |||||||||| |||||  |||
seq2  GCCAGCCTGTTCTACAGAGTGGATTCCCAGACAGCAAGGCCTAGAACAAA  50

seq1  AAATTCAGTTTTGAAAATAAATACTG-AGGGCATGTTTGACCAGGGGAGC  99
      ||| |||||||||||||| ||||||| |||||||| ||||| ||||||||
seq2  AAAATCAGTTTTGAAAAT-AATACTGAAGGGCATG-TTGACAAGGGGAGC  98

seq1  TGGCCTGGAGCAATAGTCAGATTGAGAGGTACCCCAAACCCCCAGAATTT  149
      ||||   ||||| |||||||| ||||||||||||| ||||||||||||||
seq2  TGGC--TGAGCATTAGTCAGA-TGAGAGGTACCCC-AACCCCCAGAATTT  144

seq1  TATCCTGAGACTGGGGGGAGTAA-GGGCTACTCTCTTCCTGCTCTCAGCC  198
      ||| ||||||||||||||||||| ||||||||||| || |||||||||||
seq2  TAT-CTGAGACTGGGGGGAGTAAGGGGCTACTCTC-TCTTGCTCTCAGCC  192

seq1  TATATAACCTTGCCCATGACCTCTACCT-GCCCTGCTTCTGAGGACAGTC  247
      |||||||||||||||||||||||||||| ||| |||||||||||||||||
seq2  TATATAACCTTGCCCATGACCTCTACCTGGCCTTGCTTCTGAGGACAGTC  242

seq1  ACATAGTCTTTGGCCAAATTACAGGGCTAAACCTCTAATTCTCCAATAAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGTCTTTGGCCAAATTACAGGGCTAAACCTCTAATTCTCCAATAAG  292

seq1  AACCACCCAAGTAGTTTCTTGGAATTCTTCTTCATGTAAATGAAATATTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACCCAAGTAGTTTCTTGGAATTCTTCTTCATGTAAATGAAATATTT  342

seq1  CCAGTACCTCAACTCCATCCAATAAAGTTTCCCACCTAGAAATGTCTACC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTACCTCAACTCCATCCAATAAAGTTTCCCACCTAGAAATGTCTACC  392

seq1  CATTCCCCAAGGTCTACCTAGCCCTTATTCATCCCAAATAAAGTTGAGCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCCCAAGGTCTACCTAGCCCTTATTCATCCCAAATAAAGTTGAGCT  442

seq1  GTCTTACTGAAGCAGTCTGTTCCTGAAAGCCATTCCATTATATTCACTGC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTACTGAAGCAGTCTGTTCCTGAAAGCCATTCCATTATATTCACTGC  492

seq1  TGTCCAAACCCTGCCCCCAACTCTGCTCCTCTCACCCTTGTGGACAAGTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCAAACCCTGCCCCCAACTCTGCTCCTCTCACCCTTGTGGACAAGTG  542

seq1  AATAACAACCTCTGAGGAAGGGTAAACCCACAAGAAATGAAAAAAGATGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACAACCTCTGAGGAAGGGTAAACCCACAAGAAATGAAAAAAGATGA  592

seq1  ACAAAAACTAAGGCTGAGCTATTGATCTAAGGAATGGCAATTTGATTAAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAACTAAGGCTGAGCTATTGATCTAAGGAATGGCAATTTGATTAAC  642

seq1  AAGATCGGATATCTATCTATC  668
      |||||||||||||||||||||
seq2  AAGATCGGATATCTATCTATC  663


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