BAC Information

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BAC

Clone NameB6Ng01-208J15
Chromosome6 (Build37)
Map Location 88,868,829 - 89,069,851
singlet/doubletdoublet
Overlap gene4933427D06Rik
Upstream gene8430410A17Rik, LOC665416, H1fx, EG434064, LOC100043131, Rab7, Rpn1, Gata2, Dnajb8, Eefsec, Ruvbl1, Sec61a1, 4933428M03Rik, Mgll, Abtb1, Podxl2, LOC100043146, Mcm2, Gpr175
Downstream geneGm1965, LOC100043153, LOC100043159, EG624483, EG624491, LOC665547, EG624537, Gm839, 4930512J16Rik, Plxna1, Chchd6, Txnrd3, V1r-ps1, V1rb7, V1rb9, V1r-ps2, V1r-ps3, V1ra6, V1ra5, V1rb4, V1r-ps4, V1ra2, V1rb8, V1ra4, V1ra3, V1rb2, V1rb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-208J15.bB6Ng01-208J15.g
ACCGA027438GA027439
length1,028934
definitionB6Ng01-208J15.b B6Ng01-208J15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,868,829 - 88,869,846)(89,069,151 - 89,069,851)
sequence
gaattctacagaatgtaaagtgtttgctgaataattttacttcttggagg
aggaagctatctagcggcacagcagagccaggccagagctgggcacaggt
ggcacacgggaaccaatcagcctctgaacacctggatccacctgtgacgg
ggcagggaccagctgggattcgcaggcacaagaaccagtgcagctgcctt
ctagcgcaagccacttctgagttgagctctcagcacttgaaccttgaaga
gcccagcggatgtgaaagagagggagacgaaagcgatccctagccccacc
tgaagaggggtggacaccaaggcaggtttgaaggtgagcaaggggtgggt
ggggcaggagggagaaccaggacggcgctgatttaaatgaggctagaccc
taggagtcttggctccgataaggcccctaacaatatctcagcatttgcta
attatttccatccatgcaaatggcagtgatcctcttaagacttgacaaag
agatttctgaaaacagcagacgccaaattagatgttattagcagggcaag
aaatgatcatacgagatgtctcaacaatcacacgcttcggaggacgagac
cgaaggcatcttaaaggctctgtgcaaaatcacccttccaggaagatgta
gctacggcagcagaaactagaaagggcttcaggctttgacactgaaggga
tatatatatatatatatattcccccacttgatcagaagccatttttgtga
ctgagtgtggctgcttttgcagctgtagcaaagagaggatttttccccct
ttctttcttatcttggtgcggattcttcaggagcgagaagaaaggttcag
ggttttcaaggctaaatgctgaaatgtcattatttggtaccaagaggaag
acttttttttttttttctaaaggcaacagtaagaaggctccaaagcacag
ggaactgttgaccttggggctgtagcccactccctcaccttgggggaggg
gagaagttccagccagctgggttcctcc
gaattccctgcacagtctcacaaggctgccccacttccggttccaactgc
aggtctcatgtcctaggctccttgccactcatctgactatagagcaggag
cctgcagcttctgttcacatcagaggattttctagaatgttcagagaact
cagggacacactgtttggagactgagtggctgtgaaggcttgaaatgggt
agtctgaggaggcacacaggcaagtacaggaagggtcccaagctctgtgc
tcatggcacttggggtgtcccatcctcctggcatgttgatgcccttcccc
agcctatataatcccttaacatcttcagtcaggctccattagataattgt
gactaactacaacactggccatggtgatatctgcccagctctttcttcaa
ggtccaggaaggctggcagaactccaaccctccagtcacatggctagttc
ccctggcaactaggaacacccactgaaatagtctaaggtcatttgtttta
taagaaaaactcagattttttaaaatttatttattactatacataagtac
actgtagttgacttcagatgcaccagaagagggcgtcagatctcattact
ggtggttttgagccaccatgtggttgtcaggatttgaactcaggacctat
ccaaagagcagtcagtgctcttacccgctgagccatctcaccagcccctc
agatatgtttttaaaataatgtctatggatgaaacaaaaataattccttt
gactctgtgacccaagaagctccaagatccttagaacaaggaaccgggaa
cagaactggaaactgggaacaagaccaacacatttcatctgttgtgttac
attaggctctcagtgtcaggagccaaggtcaagtgagaaacacactgcac
ctttgacagacacagagaaaggctctcaggaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_88868829_88869846
seq2: B6Ng01-208J15.b_49_1076

seq1  GAATTCTACAGAATGTAAAGTGTTTGCTGAATAATTTTACTTCTTGGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACAGAATGTAAAGTGTTTGCTGAATAATTTTACTTCTTGGAGG  50

seq1  AGGAAGCTATCTAGCGGCACAGCAGAGCCAGGCCAGAGCTGGGCACAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGCTATCTAGCGGCACAGCAGAGCCAGGCCAGAGCTGGGCACAGGT  100

seq1  GGCACACGGGAACCAATCAGCCTCTGAACACCTGGATCCACCTGTGACGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACACGGGAACCAATCAGCCTCTGAACACCTGGATCCACCTGTGACGG  150

seq1  GGCAGGGACCAGCTGGGATTCGCAGGCACAAGAACCAGTGCAGCTGCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGGACCAGCTGGGATTCGCAGGCACAAGAACCAGTGCAGCTGCCTT  200

seq1  CTAGCGCAAGCCACTTCTGAGTTGAGCTCTCAGCACTTGAACCTTGAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCGCAAGCCACTTCTGAGTTGAGCTCTCAGCACTTGAACCTTGAAGA  250

seq1  GCCCAGCGGATGTGAAAGAGAGGGAGACGAAAGCGATCCCTAGCCCCACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGCGGATGTGAAAGAGAGGGAGACGAAAGCGATCCCTAGCCCCACC  300

seq1  TGAAGAGGGGTGGACACCAAGGCAGGTTTGAAGGTGAGCAAGGGGTGGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAGGGGTGGACACCAAGGCAGGTTTGAAGGTGAGCAAGGGGTGGGT  350

seq1  GGGGCAGGAGGGAGAACCAGGACGGCGCTGATTTAAATGAGGCTAGACCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAGGAGGGAGAACCAGGACGGCGCTGATTTAAATGAGGCTAGACCC  400

seq1  TAGGAGTCTTGGCTCCGATAAGGCCCCTAACAATATCTCAGCATTTGCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGTCTTGGCTCCGATAAGGCCCCTAACAATATCTCAGCATTTGCTA  450

seq1  ATTATTTCCATCCATGCAAATGGCAGTGATCCTCTTAAGACTTGACAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTCCATCCATGCAAATGGCAGTGATCCTCTTAAGACTTGACAAAG  500

seq1  AGATTTCTGAAAACAGCAGACGCCAAATTAGATGTTATTAGCAGGGCAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTCTGAAAACAGCAGACGCCAAATTAGATGTTATTAGCAGGGCAAG  550

seq1  AAATGATCATACGAGATGTCTCAACAATCACACGCTTCGGAGGACGAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATCATACGAGATGTCTCAACAATCACACGCTTCGGAGGACGAGAC  600

seq1  CGAAGGCATCTTAAAGGCTCTGTGCAAAATCACCCTTCCAGGAAGATGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGGCATCTTAAAGGCTCTGTGCAAAATCACCCTTCCAGGAAGATGTA  650

seq1  GCTACGGCAGCAGAAACTAGAAAGGGCTTCAGGCTTTGACACTGAAGGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACGGCAGCAGAAACTAGAAAGGGCTTCAGGCTTTGACACTGAAGGGA  700

seq1  TATATATATATATATATATTCCCCCACTTGATCAGAAGCCATTTTTGTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATATATTCCCCCACTTGATCAGAAGCCATTTTTGTGA  750

seq1  CTGAGTGTGGCTGCTTTTGCAGCTGTAGCAAAGAGAGGATTTTTCCCCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTGTGGCTGCTTTTGCAGCTGTAGCAAAGAGAGGATTTTTCCCCCT  800

seq1  TTCTTTCTTATCTTGGTGCGGATTCTTCAGGAGCGAGAAGAAAGGTTCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTTATCTTGGTGCGGATTCTTCAGGAGCGAGAAGAAAGGTTCAG  850

seq1  GGTTTTCAAGGCTAAATGCTGAAATGTCATTATTTGGTACCAAGAGGAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTCAAGGCTAAATGCTGAAATGTCATTATTTGGTACCAAGAGGAAG  900

seq1  AC--TTTTTTTTTTTTCTAAAGGCAACAGTAAG-AGGCTCCAAAGCACAG  947
      ||  ||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ACTTTTTTTTTTTTTTCTAAAGGCAACAGTAAGAAGGCTCCAAAGCACAG  950

seq1  GG-ACTG-TGACCCT-GGGCTGTAGCCCACT-CCTCACCT--GGGGA-GG  990
      || |||| ||||| | ||||||||||||||| ||||||||  ||||| ||
seq2  GGAACTGTTGACCTTGGGGCTGTAGCCCACTCCCTCACCTTGGGGGAGGG  1000

seq1  GAGAAGTTCAGGCCCAGCTGGG-TCCTCC  1018
      |||||||||  | ||||||||| ||||||
seq2  GAGAAGTTCCAG-CCAGCTGGGTTCCTCC  1028

seq1: chr6_89069151_89069851
seq2: B6Ng01-208J15.g_66_766 (reverse)

seq1  TGAGGGGCTGGTGAGATGGCTCAGCGGGTAAGAGCACTGACTGCTCTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGGCTGGTGAGATGGCTCAGCGGGTAAGAGCACTGACTGCTCTTTG  50

seq1  GATAGGTCCTGAGTTCAAATCCTGACAACCACATGGTGGCTCAAAACCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGTCCTGAGTTCAAATCCTGACAACCACATGGTGGCTCAAAACCAC  100

seq1  CAGTAATGAGATCTGACGCCCTCTTCTGGTGCATCTGAAGTCAACTACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAATGAGATCTGACGCCCTCTTCTGGTGCATCTGAAGTCAACTACAG  150

seq1  TGTACTTATGTATAGTAATAAATAAATTTTAAAAAATCTGAGTTTTTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTTATGTATAGTAATAAATAAATTTTAAAAAATCTGAGTTTTTCTT  200

seq1  ATAAAACAAATGACCTTAGACTATTTCAGTGGGTGTTCCTAGTTGCCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACAAATGACCTTAGACTATTTCAGTGGGTGTTCCTAGTTGCCAGG  250

seq1  GGAACTAGCCATGTGACTGGAGGGTTGGAGTTCTGCCAGCCTTCCTGGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTAGCCATGTGACTGGAGGGTTGGAGTTCTGCCAGCCTTCCTGGAC  300

seq1  CTTGAAGAAAGAGCTGGGCAGATATCACCATGGCCAGTGTTGTAGTTAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAGAAAGAGCTGGGCAGATATCACCATGGCCAGTGTTGTAGTTAGT  350

seq1  CACAATTATCTAATGGAGCCTGACTGAAGATGTTAAGGGATTATATAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATTATCTAATGGAGCCTGACTGAAGATGTTAAGGGATTATATAGGC  400

seq1  TGGGGAAGGGCATCAACATGCCAGGAGGATGGGACACCCCAAGTGCCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAAGGGCATCAACATGCCAGGAGGATGGGACACCCCAAGTGCCATG  450

seq1  AGCACAGAGCTTGGGACCCTTCCTGTACTTGCCTGTGTGCCTCCTCAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAGAGCTTGGGACCCTTCCTGTACTTGCCTGTGTGCCTCCTCAGAC  500

seq1  TACCCATTTCAAGCCTTCACAGCCACTCAGTCTCCAAACAGTGTGTCCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCATTTCAAGCCTTCACAGCCACTCAGTCTCCAAACAGTGTGTCCCT  550

seq1  GAGTTCTCTGAACATTCTAGAAAATCCTCTGATGTGAACAGAAGCTGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCTCTGAACATTCTAGAAAATCCTCTGATGTGAACAGAAGCTGCAG  600

seq1  GCTCCTGCTCTATAGTCAGATGAGTGGCAAGGAGCCTAGGACATGAGACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTGCTCTATAGTCAGATGAGTGGCAAGGAGCCTAGGACATGAGACC  650

seq1  TGCAGTTGGAACCGGAAGTGGGGCAGCCTTGTGAGACTGTGCAGGGAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTTGGAACCGGAAGTGGGGCAGCCTTGTGAGACTGTGCAGGGAATT  700

seq1  C  701
      |
seq2  C  701