BAC Information

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BAC

Clone NameB6Ng01-209A21
Chromosome6 (Build37)
Map Location 107,381,512 - 107,382,191
singlet/doubletsinglet
Overlap genenone
Upstream geneCntn4, Il5ra, Trnt1, Crbn, Ppia-ps6_1128.1
Downstream geneLrrn1, Setmar, Sumf1, LOC100043718, Itpr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-209A21.bB6Ng01-209A21.g
ACCGA027772GA027773
length1,206692
definitionB6Ng01-209A21.b B6Ng01-209A21.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacacgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtctggcatggtgattccgccagaagttcttt
tattcttgagaagactttttgctatcctaggttttttgttattccagaca
aatttgcaaattgctccttccaattcggtgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttccttaatttctttcttcagagatttggagtttttatcata
cagatctttcacttccttagttagagtcacgccaagatattttatattat
ttgtgactattgagaaggtgttgtttccctaatttctttctcagcctgtt
tattctttgtaatagaagaaggccaatggacttgtttgagtttattttat
atccagcctacttccacgagctgtttatcaggtttagggagttcctctgt
agattttagggtctttatatataactatccattcatctgcaagtgaattg
actccgttccaatgatccttggattccttgtgtgtgtccgaattgatctc
tgtgcc
gaattcagggcactccctaaccctatcttttgataactgagttcagctaa
acacaagagtggacaaagaaagataagcagtcagaaaactggcttcatga
agggagcaatgtggtgagatcctgaaagcttggtttgccaatattccttt
agttatccacatttgcgatataactaggacagctacttaatacttcttct
accagataggaagttgttacttaaaatattcacttatttatcattgaggc
taaaataacagatacaaagataataagaaatagatgaaataataaaagat
aatagatacaaagggctttgagtaaggaaataatgatttgcttataatac
ttataatttcaatgataataatgacaccattaatattagaaataaaatac
tggtgtagcaactcatgaataaattcaaagaagagaccgaaatgcacaaa
tgaacccagttttcttggtgggaatgatcgatcaatcactttgacttaaa
gatgctctgactgggagcagtgctttctttatgctgcaggtttctctttc
atcccatctcagtattctcttcccatctttctttctcacctctctctctc
tctctctctctctctctctctctctctctctctctctctctctctccctc
tctctctctctctctcatacacactagaactctctctctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_107381512_107382191
seq2: B6Ng01-209A21.g_64_755 (reverse)

seq1  GAGAGAGAGAGAG------------AGAGAGAGGGAGAGGGAGAGGGAGA  38
      |||||||||||||             ||||||| ||||| ||||||||||
seq2  GAGAGAGAGAGAGTTCTAGTGTGTATGAGAGAGAGAGAGAGAGAGGGAGA  50

seq1  GGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  88
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  100

seq1  GAGGTGAGAAAGAAAGATGGGAAGAGAATACTGAGATGGGATGAAAGAGA  138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGAGAAAGAAAGATGGGAAGAGAATACTGAGATGGGATGAAAGAGA  150

seq1  AACCTGCAGCATAAAGAAAGCACTGCTCCCAGTCAGAGCATCTTTAAGTC  188
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGCAGCATAAAGAAAGCACTGCTCCCAGTCAGAGCATCTTTAAGTC  200

seq1  AAAGTGATTGATCGATCATTCCCACCAAGAAAACTGGGTTCATTTGTGCA  238
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGATTGATCGATCATTCCCACCAAGAAAACTGGGTTCATTTGTGCA  250

seq1  TTTCGGTCTCTTCTTTGAATTTATTCATGAGTTGCTACACCAGTATTTTA  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCGGTCTCTTCTTTGAATTTATTCATGAGTTGCTACACCAGTATTTTA  300

seq1  TTTCTAATATTAATGGTGTCATTATTATCATTGAAATTATAAGTATTATA  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAATATTAATGGTGTCATTATTATCATTGAAATTATAAGTATTATA  350

seq1  AGCAAATCATTATTTCCTTACTCAAAGCCCTTTGTATCTATTATCTTTTA  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAATCATTATTTCCTTACTCAAAGCCCTTTGTATCTATTATCTTTTA  400

seq1  TTATTTCATCTATTTCTTATTATCTTTGTATCTGTTATTTTAGCCTCAAT  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCATCTATTTCTTATTATCTTTGTATCTGTTATTTTAGCCTCAAT  450

seq1  GATAAATAAGTGAATATTTTAAGTAACAACTTCCTATCTGGTAGAAGAAG  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAATAAGTGAATATTTTAAGTAACAACTTCCTATCTGGTAGAAGAAG  500

seq1  TATTAAGTAGCTGTCCTAGTTATATCGCAAATGTGGATAACTAAAGGAAT  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAGTAGCTGTCCTAGTTATATCGCAAATGTGGATAACTAAAGGAAT  550

seq1  ATTGGCAAACCAAGCTTTCAGGATCTCACCACATTGCTCCCTTCATGAAG  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCAAACCAAGCTTTCAGGATCTCACCACATTGCTCCCTTCATGAAG  600

seq1  CCAGTTTTCTGACTGCTTATCTTTCTTTGTCCACTCTTGTGTTTAGCTGA  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTTTCTGACTGCTTATCTTTCTTTGTCCACTCTTGTGTTTAGCTGA  650

seq1  ACTCAGTTATCAAAAGATAGGGTTAGGGAGTGCCCTGAATTC  680
      ||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGTTATCAAAAGATAGGGTTAGGGAGTGCCCTGAATTC  692