BAC Information

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BAC

Clone NameB6Ng01-209B07
Chromosome6 (Build37)
Map Location 4,335,065 - 4,462,173
singlet/doubletdoublet
Overlap geneLOC100039965, Col1a2
Upstream geneSamd9l, AI987662, Ccdc132, Calcr, LOC100039942, Tfpi2, Gngt1, Gng11, 4930528H21Rik, Bet1, LOC667381
Downstream geneCasd1, Sgce, Peg10, LOC100040018, Ppp1r9a, Pon1, Pon3, Pon2, Asb4, Pdk4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-209B07.bB6Ng01-209B07.g
ACCGA027792GA027793
length1,1801,180
definitionB6Ng01-209B07.b B6Ng01-209B07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,335,065 - 4,336,245)(4,461,010 - 4,462,173)
sequence
gaattctaagccccagtgtagcaatgcttgcagaggagacctgagaagta
actacagtgagatgggatcttaggtgttttaacctccaaagtcataaaat
tgacgtctctatttgagctccctggtccatggcattttgtcctatcaggc
caggtagaataatatacactaaaagcttgactttggtgtctgaactgtac
tcagcctgtgattaagaagatgattatggctgcacatgggagcctttgag
attgagcaagcactttctagtcgttttcatcctaaccattgcaactgtca
catgcgacatgttagtattctcatcagtttcctctcataaacttgatcag
gcaggaagattaaaataatagcatgatatgagatgtgccaagttaaccac
tgagtcaactcaggagctcagcatcacctcagattcacagcttgattctt
taggcccacccaaactcatcttctctgaatcacggatttctaggcaagat
gtcaaatgccaaggactcagacctatgaagctaacttatcaacacttggc
tttttctatcaaaagaacacagttctttttctatcaaagttcctttgata
gatagcactgtactgtactctttagatgccgggatgatccctctttaacc
aaaaccaatttcttttcctcttttcttttgttttggttttatttttgttt
tgttgactggttggtttgcagtatgggaaactgatctctaacctctttct
tgttaagtaagtctcccagccccgatcatgttgctgaactaccctcatgg
ccctcttgatttttttcctggaacctggcatggagccaggcacaaatggg
accactactgtttgcttagtttattgatggaagaaaatgggccatcatga
ggcttaccatagaaaggtttttaaacagaatcctatcagagaagataaca
ggtttaaaaatagaacactaatgggtagtcatgattattattatttcact
gtccagagagtaatcttctttgggaaagcattgtgataatttcttcagac
ccattctacctctagtttgtataggacaaaattcacctgtcatttggtag
tctacattcctaatggccttatttgacattaagcttacaccacctattag
gaatcctaagagttagtagtcatttagaga
gaattcagtgctggagccgggcgtggaggcacacgcctttaatcccagca
cttgggaggcagaggcaggcagatttctgagttcaaggacagcctggtct
acagagtgagttccaggacagccacggctatacagagaaaccctgtctcg
aaaacccaaaaacccaaaaacccaaaaacccaaaaacccaaaaacccaaa
aacccaaaaacccaaaaacccaaaaacccaaaaaacccaaaaacccaaaa
accaaaaaaaaaaaaaaccccaccccccccacacacacaaaacagaattc
agcgctgagtcccccaccgagactgaaatggagaacctccacctcttagc
cttcagactcatctgccttgagaaatctgttcctaacactcgtcacctac
ctcctgactgaggaagatggcttcctacacctttacagtccctcagaacc
ccagcaagtgaaacagagcccatgggagcgtgctgcattggcagttgcta
ccctagcccagaagtcactaagagacttctttgtcctggctggagtttca
aaaagggatataaagagttttcaagttacaggaaagttaaaatgccccct
tagaagattaaacttttaaaaaatagttcatggtaataacttccctgtta
aagatctctcttcgagtggtaactgtattaaagaggtgcttttaatgcac
tcagtagataagcaatcataataagatctttgggagagaaaggtcttatt
ttactggcatacagttgggtattagaattagggaatctgattcatagtgc
taaccaatttaagcaaatatgttttttcttcctgcagtgagaccatttgg
cacttataccacttgtcaaagacataaagctaaaagaagatattaatgaa
aaagggaaatgtacttttctcaatttagtttcaagggaaattaaacctag
aactgctttgaatgttttgttcagcagactccaagcccaggaagaaatag
agagggtcagatgtttggtgaaattgctttaagacaggggctcacttatg
taattcaatcctaattcaaccttcttaataatgcaaacactcttaatttt
ggtggccggactgataaaagaatattaaatccccaaattaaatatggtgg
caaagggcttgcagctaccttcagtgaaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_4335065_4336245
seq2: B6Ng01-209B07.b_47_1226

seq1  GAATTCTAAGCCCCAGTGTAGCAATGCTTGCAGAGGAGACCTGAGAAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAGCCCCAGTGTAGCAATGCTTGCAGAGGAGACCTGAGAAGTA  50

seq1  ACTACAGTGAGATGGGATCTTAGGTGTTTTAACCTCCAAAGTCATAAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAGTGAGATGGGATCTTAGGTGTTTTAACCTCCAAAGTCATAAAAT  100

seq1  TGACGTCTCTATTTGAGCTCCCTGGTCCATGGCATTTTGTCCTATCAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACGTCTCTATTTGAGCTCCCTGGTCCATGGCATTTTGTCCTATCAGGC  150

seq1  CAGGTAGAATAATATACACTAAAAGCTTGACTTTGGTGTCTGAACTGTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAGAATAATATACACTAAAAGCTTGACTTTGGTGTCTGAACTGTAC  200

seq1  TCAGCCTGTGATTAAGAAGATGATTATGGCTGCACATGGGAGCCTTTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCTGTGATTAAGAAGATGATTATGGCTGCACATGGGAGCCTTTGAG  250

seq1  ATTGAGCAAGCACTTTCTAGTCGTTTTCATCCTAACCATTGCAACTGTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGCAAGCACTTTCTAGTCGTTTTCATCCTAACCATTGCAACTGTCA  300

seq1  CATGCGACATGTTAGTATTCTCATCAGTTTCCTCTCATAAACTTGATCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCGACATGTTAGTATTCTCATCAGTTTCCTCTCATAAACTTGATCAG  350

seq1  GCAGGAAGATTAAAATAATAGCATGATATGAGATGTGCCAAGTTAACCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAAGATTAAAATAATAGCATGATATGAGATGTGCCAAGTTAACCAC  400

seq1  TGAGTCAACTCAGGAGCTCAGCATCACCTCAGATTCACAGCTTGATTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCAACTCAGGAGCTCAGCATCACCTCAGATTCACAGCTTGATTCTT  450

seq1  TAGGCCCACCCAAACTCATCTTCTCTGAATCACGGATTTCTAGGCAAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCCCACCCAAACTCATCTTCTCTGAATCACGGATTTCTAGGCAAGAT  500

seq1  GTCAAATGCCAAGGACTCAGACCTATGAAGCTAACTTATCAACACTTGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAATGCCAAGGACTCAGACCTATGAAGCTAACTTATCAACACTTGGC  550

seq1  TTTTTCTATCAAAAGAACACAGTTCTTTTTCTATCAAAGTTCCTTTGATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTATCAAAAGAACACAGTTCTTTTTCTATCAAAGTTCCTTTGATA  600

seq1  GATAGCACTGTACTGTACTCTTTAGATGCCGGGATGATCCCTCTTTAACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGCACTGTACTGTACTCTTTAGATGCCGGGATGATCCCTCTTTAACC  650

seq1  AAAACCAATTTCTTTTCCTCTTTTCTTTTGTTTTGGTTTTATTTTTGTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCAATTTCTTTTCCTCTTTTCTTTTGTTTTGGTTTTATTTTTGTTT  700

seq1  TGTTGACTGGTTGGTTTGCAGTATGGGAAACTGATCTCTAACCTCTTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGACTGGTTGGTTTGCAGTATGGGAAACTGATCTCTAACCTCTTTCT  750

seq1  TGTTAAGTAAGTCTCCCAGCCCCGATCATGTTGCTGAACTACCCTCATGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAGTAAGTCTCCCAGCCCCGATCATGTTGCTGAACTACCCTCATGG  800

seq1  CCCTCTTGATTTTTTTCCTGGAACCTGGCATGGAGCCAGGCACAAATGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTTGATTTTTTTCCTGGAACCTGGCATGGAGCCAGGCACAAATGGG  850

seq1  ACCACTACTGTTTGCTTAG-TTATTGATGGAAGAAAATGGGCCATCATGA  899
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ACCACTACTGTTTGCTTAGTTTATTGATGGAAGAAAATGGGCCATCATGA  900

seq1  GGCTTACCATAG-AAGGTTTTTAAACAGAATCCTATCAGAGAAGATAACA  948
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GGCTTACCATAGAAAGGTTTTTAAACAGAATCCTATCAGAGAAGATAACA  950

seq1  GGTTTAAAAATAGAACACTAATGGGTAGTCATGATTATTATTATTTCACT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTAAAAATAGAACACTAATGGGTAGTCATGATTATTATTATTTCACT  1000

seq1  GTCCAGAGAAGTAATC-TCTTT-GGAAAGCAATTGTGATAATTTC-TCAG  1045
      |||||||| ||||||| ||||| ||||||| |||||||||||||| ||||
seq2  GTCCAGAG-AGTAATCTTCTTTGGGAAAGC-ATTGTGATAATTTCTTCAG  1048

seq1  ACACATTCTACCTCTAAGTTTGTATAAGACAAAA-TCA-CTGTCATTTTG  1093
      || |||||||||||| |||||||||| ||||||| ||| |||||| ||||
seq2  ACCCATTCTACCTCT-AGTTTGTATAGGACAAAATTCACCTGTCA-TTTG  1096

seq1  GTAGTCTACATT-CTTATGG-CTTATTTGACATAAAGC-TACAC--ACTA  1138
      |||||||||||| || |||| |||||||||||| |||| |||||   |||
seq2  GTAGTCTACATTCCTAATGGCCTTATTTGACATTAAGCTTACACCACCTA  1146

seq1  TTAATGAATCTCTAAGAGGGAGGTAAGTAGTCTATTTTAGAGA  1181
      || | ||||| ||||||     || |||||||   ||||||||
seq2  TT-AGGAATC-CTAAGA-----GTTAGTAGTC--ATTTAGAGA  1180

seq1: chr6_4461010_4462173
seq2: B6Ng01-209B07.g_66_1245 (reverse)

seq1  TGTTCACTGAAGGTAGCTGC-AGCCTTCTG-CACCATTATTTAATTTGGG  48
      |||||||||||||||||||| |||| | || ||||| |||||||||||||
seq2  TGTTCACTGAAGGTAGCTGCAAGCCCTTTGCCACCA-TATTTAATTTGGG  49

seq1  GATTTAATA-TCTTTTATCAGTTCGG----CACAAATAAGAGGTGTTGCA  93
      ||||||||| |||||||||||| |||    || || ||||||   |||||
seq2  GATTTAATATTCTTTTATCAGTCCGGCCACCAAAATTAAGAGTGTTTGCA  99

seq1  TTATTAAAGAGGTTG-ATTA-GATTGAATTACATAAGTGAAGCCCCTGGT  141
      |||||||  |||||| |||| |||||||||||||||||| ||||||| ||
seq2  TTATTAAGAAGGTTGAATTAGGATTGAATTACATAAGTG-AGCCCCT-GT  147

seq1  CTT-AAGCAATTTCA-CAAACATCTGACCCTCTCTATT--CTCCTTGGCT  187
      ||| ||||||||||| ||||||||||||||||||||||   |||| ||||
seq2  CTTAAAGCAATTTCACCAAACATCTGACCCTCTCTATTTCTTCCTGGGCT  197

seq1  TGGAGTCTGCTGAAC-AAACATTCAAAGCAGTTCTAGGTTTAATTT-CCT  235
      ||||||||||||||| |||||||||||||||||||||||||||||| |||
seq2  TGGAGTCTGCTGAACAAAACATTCAAAGCAGTTCTAGGTTTAATTTCCCT  247

seq1  TGAAACTAAATTGAGAAAAGTACATTTCCCTTTTTCATTAATATCTTCTT  285
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACTAAATTGAGAAAAGTACATTTCCCTTTTTCATTAATATCTTCTT  297

seq1  TTAGCTTTATGTCTTTGACAA-TGGTATAAGTGCCAAATGGTCTCACTGC  334
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTAGCTTTATGTCTTTGACAAGTGGTATAAGTGCCAAATGGTCTCACTGC  347

seq1  AGGAAG-AAAAACATATTTGCTT-AATTGGTTAGCACTATGAATCAGATT  382
      |||||| |||||||||||||||| ||||||||||||||||||||||||||
seq2  AGGAAGAAAAAACATATTTGCTTAAATTGGTTAGCACTATGAATCAGATT  397

seq1  -CCTAATTCTAATACCCAACTGTATGCCAGTAAAATAAGACCTTTCTCTC  431
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAATTCTAATACCCAACTGTATGCCAGTAAAATAAGACCTTTCTCTC  447

seq1  CCAAAGATCTTATTATGATTGCTTATCTACTGAGTGCATTAAAAGCACCT  481
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGATCTTATTATGATTGCTTATCTACTGAGTGCATTAAAAGCACCT  497

seq1  CTTTAATACAGTTACCACTCGAAGAGAGATCTTTAACAGGGAAGTTATTA  531
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATACAGTTACCACTCGAAGAGAGATCTTTAACAGGGAAGTTATTA  547

seq1  CCATGAACTATTTTTTAAAAGTTTAATCTTCTAAGGGGGCATTTTAACTT  581
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAACTATTTTTTAAAAGTTTAATCTTCTAAGGGGGCATTTTAACTT  597

seq1  TCCTGTAACTTGAAAACTCTTTATATCCCTTTTTGAAACTCCAGCCAGGA  631
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTAACTTGAAAACTCTTTATATCCCTTTTTGAAACTCCAGCCAGGA  647

seq1  CAAAGAAGTCTCTTAGTGACTTCTGGGCTAGGGTAGCAACTGCCAATGCA  681
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAAGTCTCTTAGTGACTTCTGGGCTAGGGTAGCAACTGCCAATGCA  697

seq1  GCACGCTCCCATGGGCTCTGTTTCACTTGCTGGGGTTCTGAGGGACTGTA  731
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGCTCCCATGGGCTCTGTTTCACTTGCTGGGGTTCTGAGGGACTGTA  747

seq1  AAGGTGTAGGAAGCCATCTTCCTCAGTCAGGAGGTAGGTGACGAGTGTTA  781
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGTAGGAAGCCATCTTCCTCAGTCAGGAGGTAGGTGACGAGTGTTA  797

seq1  GGAACAGATTTCTCAAGGCAGATGAGTCTGAAGGCTAAGAGGTGGAGGTT  831
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAGATTTCTCAAGGCAGATGAGTCTGAAGGCTAAGAGGTGGAGGTT  847

seq1  CTCCATTTCAGTCTCGGTGGGGGACTCAGCGCTGAATTCTTTTTTGTGTG  881
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CTCCATTTCAGTCTCGGTGGGGGACTCAGCGCTGAATTCTGTTTTGTGTG  897

seq1  TGTGGGGGGGGTGGGGTTTTTTTTTTTTTTGGTTTTTGGGTTTTTGGGTT  931
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGGGGGGTGGGGTTTTTTTTTTTTTTGGTTTTTGGGTTTTTGGGTT  947

seq1  TTTTGGGTTTTTGGGTTTTTGGGTTTTTGGGTTTTTGGGTTTTTGGGTTT  981
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGGTTTTTGGGTTTTTGGGTTTTTGGGTTTTTGGGTTTTTGGGTTT  997

seq1  TTGGGTTTTTGGGTTTTTGGGTTTTTGGGTTTTCGAGACAGGGTTTCTCT  1031
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTTTTTGGGTTTTTGGGTTTTTGGGTTTTCGAGACAGGGTTTCTCT  1047

seq1  GTATAGCCGTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGTCCTTG  1081
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGCCGTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGTCCTTG  1097

seq1  AACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCG  1131
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCG  1147

seq1  TGTGCCTCCACGCCCGGCTCCAGCACTGAATTC  1164
      |||||||||||||||||||||||||||||||||
seq2  TGTGCCTCCACGCCCGGCTCCAGCACTGAATTC  1180