BAC Information

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BAC

Clone NameB6Ng01-209C23
Chromosome6 (Build37)
Map Location 123,975,347 - 124,181,195
singlet/doubletdoublet
Overlap geneV2r1b, EG384486, Vmn2r-ps34, Vmn2r27
Upstream geneClec4b1, Clec4a2, Clec4b2, Ppia-ps6_1344.1, Clec4n, Clec4d, Clec4e, EG232358, EG667180, LOC626436, EG546912, LOC100043511, Vmn2r-ps32, EG546913, LOC100043516, EG435916, EG243628, EG545874, LOC384484, LOC623282
Downstream geneLOC623374, EG622297, Cd163, LOC100043530, 1700013D24Rik, 1700027F06Rik, 1700060L04Rik, Pex5, Clstn3, C1rl, C1r, C1s, LOC667277, EG317677, Mboat5, Emg1, Phb2, Ptpn6, Grcc10, Atn1, Eno2, Lrrc23, Spsb2, Tpi1, Usp5, Cdca3, Gnb3, Leprel2, Gpr162, Cd4, Lag3, Ptms, Mlf2, EG667343, Cops7a, C530028O21Rik, Zfp384, Ing4, Acrbp, Gpr92, Chd4, Nol1, A930037G23Rik, Gapdh, Ncapd2, Mrpl51, Vamp1, Tapbpl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-209C23.bB6Ng01-209C23.g
ACCGA027870GA027871
length1,1531,164
definitionB6Ng01-209C23.b B6Ng01-209C23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(124,180,050 - 124,181,195)(123,975,347 - 123,976,502)
sequence
gaattcttttaaatatgaatatgttgaaaataatttgtagttaagaacaa
tttttctttgtagttatttagtgtagtatacagaaaatattttatttatc
atgtttcaatgtacttgacagtttttaaattgctatggttgatcaaccac
tgtgtactttcctgaggttcatcctatttttaaatacttcctgaaagatt
aactttgaatgtttgctatttcccacatgctttactcttctatttaaatt
tctcatacacaatcgcacagtaaaaattgaaagttttacttttcacagta
tgtggtagtacaaacctttaatcccagaacttgagaatcagaggcagttc
tgtgagcctgagtttaacctagtctatatactgagtttaatttcagcctg
ggctgaataagtgagactctgtctcaaaaaaaaaattcaaaaaaattgaa
tttgataagttgtactatgaatcttctttcttaagactaatttcttcaca
ttttaaatatagaatatcctgcttgtttcttggtatatcatgtatatttt
tatatgacttagacttttataagtaaaaatccagaatttgagaggtagca
tgagaggcactgggtggataaatgagcacaaggtaaaggatataattata
ttttaattaaaaattaatattaaaaaagaacacaaaatggtctttctaat
ttttcctcctagcaatctacctaaacattatcagcacatattggcaatgg
tttttgctgtagaaacaatcaacaaggacccaaatattctattcaatatg
tccttgggattttatctctttgatgttgactttattgtgatgaaggccat
ggaaagttgtatggtgttgatctcaggagagagaccaccaattcctaact
acagctgcaggcccgagaagactaataagccggttgcagtgataggaggc
tattcaaaagcaataacagctcagatctcccaagttctaagtctctacaa
tgtcccacagggtacacaaagcatcctgattcttatgttaaacatagtat
atatactaaattctcctttaatccaggttattccttttgatgatatattg
gaactgccttaataaattacctacctttattatcggtttacacttttaaa
gaa
gaattcttttaaatatgtaagacattgttgaaaagactttgtagtcgaaa
acaatatttctttgtttttatttagtgtattgtactgcgaacattttatt
tttcatgtttaaacttacttgacactatttttttcaattgctatgtttga
tcaaacattgtattttcctgaggtctggaactcactctgtagaccaggtt
ggcctcaaacttagaaatccacctgcttctgcctcccaagggctgggaat
aaaggcatgtgccaccatggcccggctaactaatatatttctaagtagtc
cttttcaagttatttttagtatatagaatatcctgcttttttcttaaaat
acagtgaatgctctttatatgccttagattgctgtaaataaaaatccaaa
atttgagagggagcactggaggagctgcagggagaaaagagatggaggta
aatgatgtaattatgttttaattaaaaattgaaaaggaacataaaaatgt
tttttccaatttttcctcctagggatctcattaaatattatcagcacatt
ttagcaatggtttttgctatagaaaaaatcaacaaggacccaaatattct
attcaacaagtccctgggattctttctcttcaatgtcaacttcattgaga
tgaaggctgcggaaggttctatggctttgctctcaggagagagcccccca
attcctaactacagctgcaggcctgaaaagactgataagctggttgcagt
gataggaggcatttcaacatcaatatccattcagatctcccgagttctaa
gtctctacaacgtcccacaggtacacaaagaatcctggctccttagggta
aacatagtaacatagtaatgtaataaatgctaattaattccagtattgtt
tactgaagaggtataggacggcttaataatttactattcatcatttttaa
ctctgataataattattcataaaatgaaatcatattttgtataataaatt
aattcagacttttaaaaattggaaaaatgcccaactccacctataccaac
ctttcaataaataattgaaactcctattgtagtcccaacgaaatcctttt
tttttttatccagaggggaagcaaccagattctttatataggtgggagtc
aaataaaccccttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_124180050_124181195
seq2: B6Ng01-209C23.b_48_1200 (reverse)

seq1  TTCTTT-AAAGT-TAAAACGATAATAAA-GTA-GTAAATTATTAA-GCAG  45
      |||||| ||||| |||| |||||||||| ||| |||| ||||||| ||||
seq2  TTCTTTAAAAGTGTAAACCGATAATAAAGGTAGGTAATTTATTAAGGCAG  50

seq1  -TCCCATATATCATCAAAAAGAATAA-CTGGATT-AAGGAGAATTTAGTA  92
       ||| |||||||||||||| |||||| ||||||| |||||||||||||||
seq2  TTCCAATATATCATCAAAAGGAATAACCTGGATTAAAGGAGAATTTAGTA  100

seq1  TTATAATACTATGTTTAACATAAGAATCAGGATGCTTTGTGTA-CCTGTG  141
       ||| |||||||||||||||||||||||||||||||||||||| ||||||
seq2  -TAT-ATACTATGTTTAACATAAGAATCAGGATGCTTTGTGTACCCTGTG  148

seq1  GGACATTGTAGAGACTTAGAACTTGGGAGATCTGAGCTGTTATTGCTTTT  191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATTGTAGAGACTTAGAACTTGGGAGATCTGAGCTGTTATTGCTTTT  198

seq1  GAATAGCCTCCTATCACTGCAACCGGCTTATTAGTCTTCTCGGGCCTGCA  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGCCTCCTATCACTGCAACCGGCTTATTAGTCTTCTCGGGCCTGCA  248

seq1  GCTGTAGTTAGGAATTGGTGGTCTCTCTCCTGAGATCAACACCATACAAC  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTAGTTAGGAATTGGTGGTCTCTCTCCTGAGATCAACACCATACAAC  298

seq1  TTTCCATGGCCTTCATCACAATAAAGTCAACATCAAAGAGATAAAATCCC  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATGGCCTTCATCACAATAAAGTCAACATCAAAGAGATAAAATCCC  348

seq1  AAGGACATATTGAATAGAATATTTGGGTCCTTGTTGATTGTTTCTACAGC  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACATATTGAATAGAATATTTGGGTCCTTGTTGATTGTTTCTACAGC  398

seq1  AAAAACCATTGCCAATATGTGCTGATAATGTTTAGGTAGATTGCTAGGAG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCATTGCCAATATGTGCTGATAATGTTTAGGTAGATTGCTAGGAG  448

seq1  GAAAAATTAGAAAGACCATTTTGTGTTCTTTTTTAATATTAATTTTTAAT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATTAGAAAGACCATTTTGTGTTCTTTTTTAATATTAATTTTTAAT  498

seq1  TAAAATATAATTATATCCTTTACCTTGTGCTCATTTATCCACCCAGTGCC  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATATAATTATATCCTTTACCTTGTGCTCATTTATCCACCCAGTGCC  548

seq1  TCTCATGCTACCTCTCAAATTCTGGATTTTTACTTATAAAAGTCTAAGTC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATGCTACCTCTCAAATTCTGGATTTTTACTTATAAAAGTCTAAGTC  598

seq1  ATATAAAAATATACATGATATACCAAGAAACAAGCAGGATATTCTATATT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAAATATACATGATATACCAAGAAACAAGCAGGATATTCTATATT  648

seq1  TAAAATGTGAAGAAATTAGTCTTAAGAAAGAAGATTCATAGTACAACTTA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGTGAAGAAATTAGTCTTAAGAAAGAAGATTCATAGTACAACTTA  698

seq1  TCAAATTCAATTTTTTTGAATTTTTTTTTTGAGACAGAGTCTCACTTATT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATTCAATTTTTTTGAATTTTTTTTTTGAGACAGAGTCTCACTTATT  748

seq1  CAGCCCAGGCTGAAATTAAACTCAGTATATAGACTAGGTTAAACTCAGGC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCAGGCTGAAATTAAACTCAGTATATAGACTAGGTTAAACTCAGGC  798

seq1  TCACAGAACTGCCTCTGATTCTCAAGTTCTGGGATTAAAGGTTTGTACTA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGAACTGCCTCTGATTCTCAAGTTCTGGGATTAAAGGTTTGTACTA  848

seq1  CCACATACTGTGAAAAGTAAAACTTTCAATTTTTACTGTGCGATTGTGTA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATACTGTGAAAAGTAAAACTTTCAATTTTTACTGTGCGATTGTGTA  898

seq1  TGAGAAATTTAAATAGAAGAGTAAAGCATGTGGGAAATAGCAAACATTCA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAATTTAAATAGAAGAGTAAAGCATGTGGGAAATAGCAAACATTCA  948

seq1  AAGTTAATCTTTCAGGAAGTATTTAAAAATAGGATGAACCTCAGGAAAGT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAATCTTTCAGGAAGTATTTAAAAATAGGATGAACCTCAGGAAAGT  998

seq1  ACACAGTGGTTGATCAACCATAGCAATTTAAAAACTGTCAAGTACATTGA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGTGGTTGATCAACCATAGCAATTTAAAAACTGTCAAGTACATTGA  1048

seq1  AACATGATAAATAAAATATTTTCTGTATACTACACTAAATAACTACAAAG  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGATAAATAAAATATTTTCTGTATACTACACTAAATAACTACAAAG  1098

seq1  AAAAATTGTTCTTAACTACAAATTATTTTCAACATATTCATATTTAAAAG  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTGTTCTTAACTACAAATTATTTTCAACATATTCATATTTAAAAG  1148

seq1  AATTC  1146
      |||||
seq2  AATTC  1153

seq1: chr6_123975347_123976502
seq2: B6Ng01-209C23.g_64_1227

seq1  GAATTCTTTTAAATATGTAAGACATTGTTGAAAAGACTTTGTAGTCGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTAAATATGTAAGACATTGTTGAAAAGACTTTGTAGTCGAAA  50

seq1  ACAATATTTCTTTGTTTTTATTTAGTGTATTGTACTGCGAACATTTTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATATTTCTTTGTTTTTATTTAGTGTATTGTACTGCGAACATTTTATT  100

seq1  TTTCATGTTTAAACTTACTTGACACTATTTTTTTCAATTGCTATGTTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGTTTAAACTTACTTGACACTATTTTTTTCAATTGCTATGTTTGA  150

seq1  TCAAACATTGTATTTTCCTGAGGTCTGGAACTCACTCTGTAGACCAGGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACATTGTATTTTCCTGAGGTCTGGAACTCACTCTGTAGACCAGGTT  200

seq1  GGCCTCAAACTTAGAAATCCACCTGCTTCTGCCTCCCAAGGGCTGGGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCAAACTTAGAAATCCACCTGCTTCTGCCTCCCAAGGGCTGGGAAT  250

seq1  AAAGGCATGTGCCACCATGGCCCGGCTAACTAATATATTTCTAAGTAGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCATGTGCCACCATGGCCCGGCTAACTAATATATTTCTAAGTAGTC  300

seq1  CTTTTCAAGTTATTTTTAGTATATAGAATATCCTGCTTTTTTCTTAAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCAAGTTATTTTTAGTATATAGAATATCCTGCTTTTTTCTTAAAAT  350

seq1  ACAGTGAATGCTCTTTATATGCCTTAGATTGCTGTAAATAAAAATCCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGAATGCTCTTTATATGCCTTAGATTGCTGTAAATAAAAATCCAAA  400

seq1  ATTTGAGAGGGAGCACTGGAGGAGCTGCAGGGAGAAAAGAGATGGAGGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAGAGGGAGCACTGGAGGAGCTGCAGGGAGAAAAGAGATGGAGGTA  450

seq1  AATGATGTAATTATGTTTTAATTAAAAATTGAAAAGGAACATAAAAATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATGTAATTATGTTTTAATTAAAAATTGAAAAGGAACATAAAAATGT  500

seq1  TTTTTCCAATTTTTCCTCCTAGGGATCTCATTAAATATTATCAGCACATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCAATTTTTCCTCCTAGGGATCTCATTAAATATTATCAGCACATT  550

seq1  TTAGCAATGGTTTTTGCTATAGAAAAAATCAACAAGGACCCAAATATTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAATGGTTTTTGCTATAGAAAAAATCAACAAGGACCCAAATATTCT  600

seq1  ATTCAACAAGTCCCTGGGATTCTTTCTCTTCAATGTCAACTTCATTGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAACAAGTCCCTGGGATTCTTTCTCTTCAATGTCAACTTCATTGAGA  650

seq1  TGAAGGCTGCGGAAGGTTCTATGGCTTTGCTCTCAGGAGAGAGCCCCCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGCTGCGGAAGGTTCTATGGCTTTGCTCTCAGGAGAGAGCCCCCCA  700

seq1  ATTCCTAACTACAGCTGCAGGCCTGAAAAGACTGATAAGCTGGTTGCAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTAACTACAGCTGCAGGCCTGAAAAGACTGATAAGCTGGTTGCAGT  750

seq1  GATAGGAGGCATTTCAACATCAATATCCATTCAGATCTCCCGAGTTCTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGAGGCATTTCAACATCAATATCCATTCAGATCTCCCGAGTTCTAA  800

seq1  GTCTCTACAACGTCCCACAGGTACACAAAGAATCCTGGCTCCTTAGGGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTACAACGTCCCACAGGTACACAAAGAATCCTGGCTCCTTAGGGTA  850

seq1  AACATAGTAACATAGTAATGTAATAAATGCTAATTAATTCCAGTATTGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAGTAACATAGTAATGTAATAAATGCTAATTAATTCCAGTATTGTT  900

seq1  TACTGAAGAGGTATAGGACGGCTTAATAATTTACTATTCATCATTTTTAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAAGAGGTATAGGACGGCTTAATAATTTACTATTCATCATTTTTAA  950

seq1  CTCTGATAATAATTTATTCATAAAATGAAATCATA-TTTGTATAATAAAT  999
      |||||||||||| |||||||||||||||||||||| ||||||||||||| 
seq2  CTCTGATAATAA-TTATTCATAAAATGAAATCATATTTTGTATAATAAA-  998

seq1  TTAATTTCAAGACTTTTAAAAATTGGAAAAATG-CCAACTC--ACTATAC  1046
      ||||||   |||||||||||||||||||||||| |||||||   ||||||
seq2  TTAATT--CAGACTTTTAAAAATTGGAAAAATGCCCAACTCCACCTATAC  1046

seq1  CAA-CTTTC-ATAA--TATTGAACTTCCTA-TGTAG--CCCACGATATTC  1089
      ||| ||||| ||||   ||||||  ||||| |||||  || |||| || |
seq2  CAACCTTTCAATAAATAATTGAAACTCCTATTGTAGTCCCAACGAAATCC  1096

seq1  TTTTTTTTTTTTTTTTTTCAGAAGGG-AGC-ATCAGATTCTTTATA---G  1134
          ||||||||||| | |||| ||| ||| | |||||||||||||   |
seq2  ----TTTTTTTTTTTATCCAGAGGGGAAGCAACCAGATTCTTTATATAGG  1142

seq1  TGGAAGTCAAATAAACCCCTTC  1156
      ||| ||||||||||||||||||
seq2  TGGGAGTCAAATAAACCCCTTC  1164