BAC Information

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BAC

Clone NameB6Ng01-209E24
Chromosome6 (Build37)
Map Location 21,619,564 - 21,782,592
singlet/doubletdoublet
Overlap geneKcnd2, Tspan12
Upstream geneLOC100041343
Downstream geneLOC100041358, Ing3, A430107O13Rik, LOC667307, Wnt16, D6Wsu176e, LOC100040948, LOC100040959, LOC668018, LOC668022
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-209E24.bB6Ng01-209E24.g
ACCGA027961GA027962
length7521,178
definitionB6Ng01-209E24.b B6Ng01-209E24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,781,841 - 21,782,592)(21,619,564 - 21,620,738)
sequence
gaattcttctcttactgcttttgcttagcttttaccattcctgctaaact
ttatctgaaatgttatctcctggaataatattgacaaccaagagaaaagt
actaggtaacatttttacgatacttctcatgccagacactgaagagtctt
actcgatgagttatacgaagattctttttccccacaactctaatgacata
ggtactattattgtcaaataatttacataaggagttgaaactgcagagat
gtcaagcaacttcaatgattctgcatcgctatcaaagaatctgctgctca
gaccatagcaacccaatttagatgacttatatttttctgtttcatatttt
actttataaaccccaagttttcctgagtttcatgtaatgtgtgttgcagc
ttgtaaaacattttggatgtgattgctgacttcaaatatgatggcaataa
tacgggacaactaaatgttaaatgaggcccgaagaacacagtaaccagac
caaggtcactgaagggtgaggatcgtggctgtgattcagacagacctcac
tgattttgattgccaaggccaattctccatggacattttctctaacttgg
aattccagcaaaaagtttcttattatgtaaaattagttgaaactaccata
ctttttgagtaaccattcatctttcccattattttaataactgtttatta
aacacaagtatgggcatgaactagagtggtgtgtgtgtgtatgtgtgtgt
gt

gaattcataagatttctgttccttgaaaagtaccaattacttggaaagat
attgacagcctttgtatagttggtatagcaaataaatcgcaacaaggtaa
ttagtgaaaggaaaactccttaatgaatttaaattgaattttattgctag
gacataatgtgtgtataatttcaatgtgcacaaaatgcttaggacactat
gattagagagagaaaaaaagattaaggatcatgaaaagttttaaatagtg
ccacagttgatgactagatcatattggaaaattagggggcaagacaatgg
tgatgcagaaactggtaaaaaccgaggacaaaaccacttgccccagtaaa
cccttgaggagaacatgaaatgagacattgaaataccttttcagagtcca
ggcaagtggtggtggcagtggagctaaccacagatgaagtcatgggaggg
cagaatcattacggattctcccattgtggtttgcacgggacagccttgtc
ctttttcttttctttttgcgattctctggcttctagcttgaaccactggg
gtaatagccaccatctccaaacagagcctttagttagtgaaatagttgta
ataagaaaatggagggcttgatcatcatctgaaagcaatggggatagagc
tgatgacatggcaacctctgttatatattaaaaaaaaaaaaaaaaaaaaa
aaaaaaaagccaagtttgtacaagagactgaactctttttgccggctggc
ttacagtagccttattcctgagactttcaaatagagatctttgctaaaat
gtgttcatgaagttcaagttagggatactgtatttcagtgtgttgggcct
taaagcttaagcagccacgtgtaaatagaagcttattttgcaagagacaa
atatttaatgaagagaaaaattggtacaatgccacttaccacaaggttat
aatacaatatgtgactatactcagtttttgttaactgtagcaaatggcct
aattatttttccatatttaatttctaccagcttctattttaagaagccag
aagtgtttttttacccacaggttccacttggtcattaggagaggtgatat
tctctagcctaactcgcatgtccttaagggttctgagatcttctaccagc
tcaggctcgagctgttttataccaaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_21781841_21782592
seq2: B6Ng01-209E24.b_51_802 (reverse)

seq1  ACACACACACATACACACACACACCACTCTAGTTCATGCCCATACTTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACATACACACACACACCACTCTAGTTCATGCCCATACTTGTG  50

seq1  TTTAATAAACAGTTATTAAAATAATGGGAAAGATGAATGGTTACTCAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATAAACAGTTATTAAAATAATGGGAAAGATGAATGGTTACTCAAAA  100

seq1  AGTATGGTAGTTTCAACTAATTTTACATAATAAGAAACTTTTTGCTGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGGTAGTTTCAACTAATTTTACATAATAAGAAACTTTTTGCTGGAA  150

seq1  TTCCAAGTTAGAGAAAATGTCCATGGAGAATTGGCCTTGGCAATCAAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAGTTAGAGAAAATGTCCATGGAGAATTGGCCTTGGCAATCAAAAT  200

seq1  CAGTGAGGTCTGTCTGAATCACAGCCACGATCCTCACCCTTCAGTGACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAGGTCTGTCTGAATCACAGCCACGATCCTCACCCTTCAGTGACCT  250

seq1  TGGTCTGGTTACTGTGTTCTTCGGGCCTCATTTAACATTTAGTTGTCCCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTGGTTACTGTGTTCTTCGGGCCTCATTTAACATTTAGTTGTCCCG  300

seq1  TATTATTGCCATCATATTTGAAGTCAGCAATCACATCCAAAATGTTTTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTGCCATCATATTTGAAGTCAGCAATCACATCCAAAATGTTTTAC  350

seq1  AAGCTGCAACACACATTACATGAAACTCAGGAAAACTTGGGGTTTATAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGCAACACACATTACATGAAACTCAGGAAAACTTGGGGTTTATAAA  400

seq1  GTAAAATATGAAACAGAAAAATATAAGTCATCTAAATTGGGTTGCTATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAATATGAAACAGAAAAATATAAGTCATCTAAATTGGGTTGCTATGG  450

seq1  TCTGAGCAGCAGATTCTTTGATAGCGATGCAGAATCATTGAAGTTGCTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGCAGCAGATTCTTTGATAGCGATGCAGAATCATTGAAGTTGCTTG  500

seq1  ACATCTCTGCAGTTTCAACTCCTTATGTAAATTATTTGACAATAATAGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTCTGCAGTTTCAACTCCTTATGTAAATTATTTGACAATAATAGTA  550

seq1  CCTATGTCATTAGAGTTGTGGGGAAAAAGAATCTTCGTATAACTCATCGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGTCATTAGAGTTGTGGGGAAAAAGAATCTTCGTATAACTCATCGA  600

seq1  GTAAGACTCTTCAGTGTCTGGCATGAGAAGTATCGTAAAAATGTTACCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGACTCTTCAGTGTCTGGCATGAGAAGTATCGTAAAAATGTTACCTA  650

seq1  GTACTTTTCTCTTGGTTGTCAATATTATTCCAGGAGATAACATTTCAGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTTTCTCTTGGTTGTCAATATTATTCCAGGAGATAACATTTCAGAT  700

seq1  AAAGTTTAGCAGGAATGGTAAAAGCTAAGCAAAAGCAGTAAGAGAAGAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTAGCAGGAATGGTAAAAGCTAAGCAAAAGCAGTAAGAGAAGAAT  750

seq1  TC  752
      ||
seq2  TC  752


seq1: chr6_21619564_21620738
seq2: B6Ng01-209E24.g_68_1245

seq1  GAATTCATAAGATTTCTGTTCCTTGAAAAGTACCAATTACTTGGAAAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAAGATTTCTGTTCCTTGAAAAGTACCAATTACTTGGAAAGAT  50

seq1  ATTGACAGCCTTTGTATAGTTGGTATAGCAAATAAATCGCAACAAGGTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACAGCCTTTGTATAGTTGGTATAGCAAATAAATCGCAACAAGGTAA  100

seq1  TTAGTGAAAGGAAAACTCCTTAATGAATTTAAATTGAATTTTATTGCTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGAAAGGAAAACTCCTTAATGAATTTAAATTGAATTTTATTGCTAG  150

seq1  GACATAATGTGTGTATAATTTCAATGTGCACAAAATGCTTAGGACACTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATAATGTGTGTATAATTTCAATGTGCACAAAATGCTTAGGACACTAT  200

seq1  GATTAGAGAGAGAAAAAAAGATTAAGGATCATGAAAAGTTTTAAATAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGAGAGAGAAAAAAAGATTAAGGATCATGAAAAGTTTTAAATAGTG  250

seq1  CCACAGTTGATGACTAGATCATATTGGAAAATTAGGGGGCAAGACAATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGTTGATGACTAGATCATATTGGAAAATTAGGGGGCAAGACAATGG  300

seq1  TGATGCAGAAACTGGTAAAAACCGAGGACAAAACCACTTGCCCCAGTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCAGAAACTGGTAAAAACCGAGGACAAAACCACTTGCCCCAGTAAA  350

seq1  CCCTTGAGGAGAACATGAAATGAGACATTGAAATACCTTTTCAGAGTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGAGGAGAACATGAAATGAGACATTGAAATACCTTTTCAGAGTCCA  400

seq1  GGCAAGTGGTGGTGGCAGTGGAGCTAACCACAGATGAAGTCATGGGAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGTGGTGGTGGCAGTGGAGCTAACCACAGATGAAGTCATGGGAGGG  450

seq1  CAGAATCATTACGGATTCTCCCATTGTGGTTTGCACGGGACAGCCTTGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATCATTACGGATTCTCCCATTGTGGTTTGCACGGGACAGCCTTGTC  500

seq1  CTTTTTCTTTTCTTTTTGCGATTCTCTGGCTTCTAGCTTGAACCACTGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCTTTTCTTTTTGCGATTCTCTGGCTTCTAGCTTGAACCACTGGG  550

seq1  GTAATAGCCACCATCTCCAAACAGAGCCTTTAGTTAGTGAAATAGTTGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATAGCCACCATCTCCAAACAGAGCCTTTAGTTAGTGAAATAGTTGTA  600

seq1  ATAAGAAAATGGAGGGCTTGATCATCATCTGAAAGCAATGGGGATAGAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAAAATGGAGGGCTTGATCATCATCTGAAAGCAATGGGGATAGAGC  650

seq1  TGATGACATGGCAACCTCTGTTATATATTAAAAAAAAAAAAAAAAAAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGACATGGCAACCTCTGTTATATATTAAAAAAAAAAAAAAAAAAAAA  700

seq1  AAAAAAAAGCCAAGTTTGTACAAGAGACTGAACTCTTTTTGCCGGCTGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAGCCAAGTTTGTACAAGAGACTGAACTCTTTTTGCCGGCTGGC  750

seq1  TTACAGTAGCCTTATTCCTGAGACTTTCAAATAGAGATCTTTGCTAAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGTAGCCTTATTCCTGAGACTTTCAAATAGAGATCTTTGCTAAAAT  800

seq1  GTGTTCATGAAGTTCAAGTTA-GGATACTGTATTTCAGTGTGTTGGGCCT  849
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GTGTTCATGAAGTTCAAGTTAGGGATACTGTATTTCAGTGTGTTGGGCCT  850

seq1  TAAAGCTTAAGCAGCCACGTGTAAATAGAAGCT--ATTTGCAAGAGACAA  897
      |||||||||||||||||||||||||||||||||   ||||||||||||||
seq2  TAAAGCTTAAGCAGCCACGTGTAAATAGAAGCTTATTTTGCAAGAGACAA  900

seq1  ATA-TTAATGAAGAGAAAAATT-GTACAATG-CACTTA-CACAAGGTTAT  943
      ||| |||||||||||||||||| |||||||| |||||| |||||||||||
seq2  ATATTTAATGAAGAGAAAAATTGGTACAATGCCACTTACCACAAGGTTAT  950

seq1  AATACAATATGTGACTATACTCAGTTTTTGTTAACTGTAGCAAATTGGCT  993
      ||||||||||||||||||||||||||||||||||||||||||||| | ||
seq2  AATACAATATGTGACTATACTCAGTTTTTGTTAACTGTAGCAAATGGCCT  1000

seq1  AA-TATTTTTCAATATTTAATTTCTACCAGCTTCTATTTTAAGAAGGCAG  1042
      || |||||||| |||||||||||||||||||||||||||||||||| |||
seq2  AATTATTTTTCCATATTTAATTTCTACCAGCTTCTATTTTAAGAAGCCAG  1050

seq1  -AGTGTTTTTT--ACCACAGGTTCACTTTTGGTCAT--AGAGAAGTGAAT  1087
       ||||||||||   |||||||||| |  ||||||||   |||| ||| ||
seq2  AAGTGTTTTTTTACCCACAGGTTC-CACTTGGTCATTAGGAGAGGTG-AT  1098

seq1  ATTCTCTAGGCTTACCTCGCATGTCCCTAGTGGGTTCCTTGTAGATACTC  1137
      |||||||| || || ||||||||||| ||  ||||||  || |||| || 
seq2  ATTCTCTA-GCCTAACTCGCATGTCCTTA-AGGGTTC--TG-AGAT-CT-  1141

seq1  TCTACCACAGCTTCAGGCTC-AGCTG-TTTATACCAAAAT  1175
      |||||  |||| |||||||| ||||| |||||||||||||
seq2  TCTAC--CAGC-TCAGGCTCGAGCTGTTTTATACCAAAAT  1178


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