BAC Information

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BAC

Clone NameB6Ng01-209G16
Chromosome6 (Build37)
Map Location 96,270,450 - 96,380,517
singlet/doubletdoublet
Overlap geneC630007B19Rik
Upstream geneSuclg2, LOC665886, LOC545867, LOC100043685, 1700123L14Rik
Downstream geneC130034I18Rik, A130022J15Rik, Tmf1, Ube1c, Arl6ip5, Lmod3, Frmd4b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-209G16.bB6Ng01-209G16.g
ACCGA028038GA028039
length5901,103
definitionB6Ng01-209G16.b B6Ng01-209G16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,270,450 - 96,271,045)(96,379,409 - 96,380,517)
sequence
cataatgcaggttagcccaagaaaatgaactgtgactttacactgaaatg
aaagatggtgtgaagggggatttctttgacttattctggaagacacgggt
gatttttagaactcacattcttctgtaaaatgatttgactcggttcaata
accagggtttgtgctttatgagctgcaactcttagtcgataaatgcaatg
gaaattattgcaaagaagtgagctctggctgtgtccacttgaggctgtct
tagggtctcatgtccagcggagtacattgtaacgttgtagacctggtcgt
gaaagatcaaggagataaatacctgtgagcatgaggaaagagaagacagg
gctaaatggcagtccatctggactctgtagacctggaaaaggcatgctgt
ttctctctctctctctctctctctctctctctgtgtgtgtgtgtgtgtgt
gtgtgtgtgtgtgtgtgtatgtgaaatgcagatatttagagctcaaaaaa
ttataattccattagggtttcttatctgtcattgtaataggacaaagata
cttttaattattttttatatccaaagaaactaacatgttt

gaattcttttatttaattctttcttcccaatcagccatctcctttaatat
tccacataaagttaatgacatcccaactgataggtgcttcgtttgacttt
tctttctttctttcttttttctatcttacaagtaaccaacgaagacgaag
atgcatatttgaaatatcccagcttgatctatattactaccagttatgga
gcaaaacagtaatgacacagcttagatctgtgaatatttaattacaaatg
gggaggttatccaatttttatcaaatatactttctgggactgaattgtac
acatagcaccatctcctcaaactgataaaatatagtcaaagataataaat
gcatatgacaatgcgtttatcaaaacactttagaaacatttattcagtaa
ttatgttgtcttctttgcttcagatattagatatctggaccaagatgagc
ctaaaggacaaagttcaagtactcatatacttcaagtactccttctccag
cacatacgtctattgagactggctatgtatgtgtcagacactggaatcga
cagggaatcgctaggacctaaaatggctttgggtttgtacagaccaatca
ataaatacccgaagaaaataagactctaaggaatgcattcaaactgcctc
ggagaagccacaatattttcaacattgctttttattgtctggaaggaaat
attaaagaaaaagcagagtgaaaaagcccagaccactcagtcagactctt
aacaggcaggacattaagaaaaatctaaacagcattagaagcgcattcaa
tgtaagattgatatctacagcaacatgaaacagtactgggtgtggattgt
ttgtttctgtttcctttccagctgaagataaatttggagatacttaaggc
aagtgaatttgccaagccattgtttttatgaaccactctggtcatttctc
aggaagagcttcgtgctggtgggggtgaccctccttccgtgccctccagg
tactgtcagcttgtcaacgtcacgttgcaggcatgcatgcatatttaaac
taacccattttccacagagcattagacagtatgcaaatgaatagtctcac
tcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_96270450_96271045
seq2: B6Ng01-209G16.b_49_644

seq1  GAATTCCATAATGCAGGTTAGCCCAAGAAAATGAACTGTGACTTTACACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAATGCAGGTTAGCCCAAGAAAATGAACTGTGACTTTACACT  50

seq1  GAAATGAAAGATGGTGTGAAGGGGGATTTCTTTGACTTATTCTGGAAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGAAAGATGGTGTGAAGGGGGATTTCTTTGACTTATTCTGGAAGAC  100

seq1  ACGGGTGATTTTTAGAACTCACATTCTTCTGTAAAATGATTTGACTCGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGTGATTTTTAGAACTCACATTCTTCTGTAAAATGATTTGACTCGGT  150

seq1  TCAATAACCAGGGTTTGTGCTTTATGAGCTGCAACTCTTAGTCGATAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAACCAGGGTTTGTGCTTTATGAGCTGCAACTCTTAGTCGATAAAT  200

seq1  GCAATGGAAATTATTGCAAAGAAGTGAGCTCTGGCTGTGTCCACTTGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGGAAATTATTGCAAAGAAGTGAGCTCTGGCTGTGTCCACTTGAGG  250

seq1  CTGTCTTAGGGTCTCATGTCCAGCGGAGTACATTGTAACGTTGTAGACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTAGGGTCTCATGTCCAGCGGAGTACATTGTAACGTTGTAGACCT  300

seq1  GGTCGTGAAAGATCAAGGAGATAAATACCTGTGAGCATGAGGAAAGAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCGTGAAAGATCAAGGAGATAAATACCTGTGAGCATGAGGAAAGAGAA  350

seq1  GACAGGGCTAAATGGCAGTCCATCTGGACTCTGTAGACCTGGAAAAGGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGGCTAAATGGCAGTCCATCTGGACTCTGTAGACCTGGAAAAGGCA  400

seq1  TGCTGTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGT  450

seq1  GTGTGTGTGTGTGTGTGTGTGTGTATGTGAAATGCAGATATTTAGAGCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTATGTGAAATGCAGATATTTAGAGCTC  500

seq1  AAAAAAGTAGAATTCCATTAGGGTTTCTTACCTGTCACTGTAATAGGACA  550
      |||||| || |||||||||||||||||||| |||||| ||||||||||||
seq2  AAAAAATTATAATTCCATTAGGGTTTCTTATCTGTCATTGTAATAGGACA  550

seq1  AAGATACATTTACATCATTTTTAGATCCAAGGAAACTAACATGTGT  596
      ||||||| ||||  |  |||||| |||||| ||||||||||||| |
seq2  AAGATACTTTTAATTATTTTTTATATCCAAAGAAACTAACATGTTT  596


seq1: chr6_96379409_96380517
seq2: B6Ng01-209G16.g_59_1161 (reverse)

seq1  CGAGTGAAGACTATTTCATTGCATAACTGTCCTAATGCTCCTGTGG-AAA  49
      |||||| ||||||||   |||||| ||||| |||||||| |||||| |||
seq2  CGAGTG-AGACTATTCATTTGCAT-ACTGT-CTAATGCT-CTGTGGAAAA  46

seq1  TGGGTTAGTTTAAATATGCATGCCATGGCCTGCAACGTGACGTTGACAAG  99
      |||||||||||||||||||||| ||| |||||||||||||||||||||||
seq2  TGGGTTAGTTTAAATATGCATG-CAT-GCCTGCAACGTGACGTTGACAAG  94

seq1  CTGACAGTACCCTGGAGGGCACGGAAGGAGGGTCA-CCCCACCAGCACGA  148
      ||||||||| ||||||||||||||||||||||||| ||||||||||||||
seq2  CTGACAGTA-CCTGGAGGGCACGGAAGGAGGGTCACCCCCACCAGCACGA  143

seq1  AGCTCTTCCCTGAGAAATGACCAGAGTGGTTCAATAAAACAATGGCTTGG  198
      ||||||| |||||||||||||||||||||||||  |||||||||||||||
seq2  AGCTCTT-CCTGAGAAATGACCAGAGTGGTTCATAAAAACAATGGCTTGG  192

seq1  CAAATTCACTTGCCTTAAGTATCTCCAAATTTATCTTCAGCTGGAAAGGA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTCACTTGCCTTAAGTATCTCCAAATTTATCTTCAGCTGGAAAGGA  242

seq1  AACAGAAACAAACAATCCACACCCAGTACTGTTTCATGTTGCTGTAGATA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAAACAAACAATCCACACCCAGTACTGTTTCATGTTGCTGTAGATA  292

seq1  TCAATCTTACATTGAATGCGCTTCTAATGCTGTTTAGATTTTTCTTAATG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCTTACATTGAATGCGCTTCTAATGCTGTTTAGATTTTTCTTAATG  342

seq1  TCCTGCCTGTTAAGAGTCTGACTGAGTGGTCTGGGCTTTTTCACTCTGCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCCTGTTAAGAGTCTGACTGAGTGGTCTGGGCTTTTTCACTCTGCT  392

seq1  TTTTCTTTAATATTTCCTTCCAGACAATAAAAAGCAATGTTGAAAATATT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTAATATTTCCTTCCAGACAATAAAAAGCAATGTTGAAAATATT  442

seq1  GTGGCTTCTCCGAGGCAGTTTGAATGCATTCCTTAGAGTCTTATTTTCTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTTCTCCGAGGCAGTTTGAATGCATTCCTTAGAGTCTTATTTTCTT  492

seq1  CGGGTATTTATTGATTGGTCTGTACAAACCCAAAGCCATTTTAGGTCCTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTATTTATTGATTGGTCTGTACAAACCCAAAGCCATTTTAGGTCCTA  542

seq1  GCGATTCCCTGTCGATTCCAGTGTCTGACACATACATAGCCAGTCTCAAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGATTCCCTGTCGATTCCAGTGTCTGACACATACATAGCCAGTCTCAAT  592

seq1  AGACGTATGTGCTGGAGAAGGAGTACTTGAAGTATATGAGTACTTGAACT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGTATGTGCTGGAGAAGGAGTACTTGAAGTATATGAGTACTTGAACT  642

seq1  TTGTCCTTTAGGCTCATCTTGGTCCAGATATCTAATATCTGAAGCAAAGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCTTTAGGCTCATCTTGGTCCAGATATCTAATATCTGAAGCAAAGA  692

seq1  AGACAACATAATTACTGAATAAATGTTTCTAAAGTGTTTTGATAAACGCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAACATAATTACTGAATAAATGTTTCTAAAGTGTTTTGATAAACGCA  742

seq1  TTGTCATATGCATTTATTATCTTTGACTATATTTTATCAGTTTGAGGAGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCATATGCATTTATTATCTTTGACTATATTTTATCAGTTTGAGGAGA  792

seq1  TGGTGCTATGTGTACAATTCAGTCCCAGAAAGTATATTTGATAAAAATTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCTATGTGTACAATTCAGTCCCAGAAAGTATATTTGATAAAAATTG  842

seq1  GATAACCTCCCCATTTGTAATTAAATATTCACAGATCTAAGCTGTGTCAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACCTCCCCATTTGTAATTAAATATTCACAGATCTAAGCTGTGTCAT  892

seq1  TACTGTTTTGCTCCATAACTGGTAGTAATATAGATCAAGCTGGGATATTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTTTTGCTCCATAACTGGTAGTAATATAGATCAAGCTGGGATATTT  942

seq1  CAAATATGCATCTTCGTCTTCGTTGGTTACTTGTAAGATAGAAAAAAGAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATGCATCTTCGTCTTCGTTGGTTACTTGTAAGATAGAAAAAAGAA  992

seq1  AGAAAGAAAGAAAAGTCAAACGAAGCACCTATCAGTTGGGATGTCATTAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAAGAAAAGTCAAACGAAGCACCTATCAGTTGGGATGTCATTAA  1042

seq1  CTTTATGTGGAATATTAAAGGAGATGGCTGATTGGGAAGAAAGAATTAAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATGTGGAATATTAAAGGAGATGGCTGATTGGGAAGAAAGAATTAAA  1092

seq1  TAAAAGAATTC  1109
      |||||||||||
seq2  TAAAAGAATTC  1103


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