BAC Information

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BAC

Clone NameB6Ng01-209G17
Chromosome6 (Build37)
Map Location 123,774,586 - 123,928,351
singlet/doubletdoublet
Overlap geneEG545874, LOC384484, LOC623282
Upstream geneFoxj2, C3ar1, Necap1, EG384482, Clec4a1, Clec4a3, Clec4a4, Clec4b1, Clec4a2, Clec4b2, Ppia-ps6_1344.1, Clec4n, Clec4d, Clec4e, EG232358, EG667180, LOC626436, EG546912, LOC100043511, Vmn2r-ps32, EG546913, LOC100043516, EG435916, EG243628
Downstream geneV2r1b, EG384486, Vmn2r-ps34, Vmn2r27, LOC623374, EG622297, Cd163, LOC100043530, 1700013D24Rik, 1700027F06Rik, 1700060L04Rik, Pex5, Clstn3, C1rl, C1r, C1s, LOC667277, EG317677, Mboat5, Emg1, Phb2, Ptpn6, Grcc10, Atn1, Eno2, Lrrc23, Spsb2, Tpi1, Usp5, Cdca3, Gnb3, Leprel2, Gpr162, Cd4, Lag3, Ptms, Mlf2, EG667343, Cops7a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-209G17.bB6Ng01-209G17.g
ACCGA028040GA028041
length1,1351,174
definitionB6Ng01-209G17.b B6Ng01-209G17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,927,203 - 123,928,351)(123,774,586 - 123,775,464)
sequence
gaattcccacgtgccaagtgagaggcttctgagcccttgaggactcagtg
actctgtgaaggggacatgatctagggctaagtaggtgcaaagcagatta
tactccagggaactgagtgtttggatacttgtgggcatgtatcaggacaa
aacaatgctttataaccttgatctacactgaaaagactggcacatgtttt
atttgtttgctgatgtgctagcagagtcaattatcctaagattctcaact
gaacatatatttgggtcttatcaattatttatcaattttagtatgaaatt
actcatagctttctctcccctgatttttctcattttactccaggaacaaa
tttgttatttctacatgattaaacatgattcttctggctactatcaagat
gcagattttgttattggaggactcttttcacttagactggcttttggtca
agactttaaagctaaatttggcagtgaagataaattggatacactggata
ttgtttctttgtaagtgctttgcttctgtctttaaaaatattgtttcaca
attttatacatgtataaaatatatgttgatcacacccacctctactactt
cccttccaatgtctcctgtcttgaaattcatggggtctctgtctgtctct
gtatctgtctgactctgtctctctgtctttttgtatatctctatgtctct
ttttctctctatctctctatgctcccccccccctctctctctcacactca
cacacacacacacacacacacacacacacacacacacacacacacacatt
ttaatctacagagctcatttaggcatgccagttctgcaggcgtgtaagac
atttagagtataggcaagctcctatgacaaacctcctgaggaaactgact
ctcccctccctagtagccaccaaatgccattggatactccgccaggctgg
gtttctttgtgtctcatccccactcatgatgaatctctgaaatatgtaga
aggggttgaaagcactttgcaatcaacaacatttttcttggttcattatt
ttactgtactgagaatattttatttttttccggtcactattggacccata
ttttgtactgctagttgatcaaaccctgtgtattt
gaattcagtagaaattcagtgaggttacttattcaataacattcaaattt
acttctagtagagacaatgaaactaattaggcattacaaagaatggagct
agaatagctcagggctagtctgcagagtgattacttggggcagtagccag
tcttacccagacatgggaattcgcaatggcctagctaataggtgggttta
ccatgtaagagttacagaatcccactgataaaggaatcttcactacagcc
aggtatagcaggctatattgcatattagaagcaagctggtgaattctgac
aaatggagattctccacagatacttataagaacagccaagttacactcat
acaagaatttatcaaggcctaggaaataatggggttgtggtattgcatta
ttcatgagaaggtctgctagagcagaaccccctggtgctagctttcacaa
ggctcaaaggagtagcacaaattgtgactagggtgtgaaatccttacctg
tcattagctgactctaggcagggctgttttatctttactgtaaatattac
ctggttcctgtaagtccttttgaagtcattcctttgttttgtgtcagcta
acttcaatgtgctttgcctactgtgacatcctacccctttattttctgta
ttatttaagactggtgttcactttgtgacaatacattcagattctacaca
acctcttgtgttgattttgtctgtgatttgccaactcattgtccacctgc
aaccagagacccattctatgcagacagggaccaaaaagggtctgcagcac
tacataaatacaattgtgtctttagttgttgtgttactcacccctatcct
gtggtgcatcatttccacattcagaatcatttctagaaatttcaacattc
agaattatttcttctaattcacacaatcaaacccttttctagaatttcca
tatttaaactatttctacaattccatattgagaatcattttataaatacc
tgttttatttgcaatttctcatctggacatgggaacacatcaaacaacag
aatggatttcccctcaacagctgttttgctaaatccagtggacaacttga
actgccaacaggataagcagtcttggtagaaaacttggagaaaggagcag
tgaattcatgacattcagttatta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_123927203_123928351
seq2: B6Ng01-209G17.b_50_1184 (reverse)

seq1  AAATACACAGTGTTTGATCAAACATAGCAGTTAACAAAAATAT-GGTCAA  49
      |||||||||| ||||||||||   |||||||  || ||||||| |||| |
seq2  AAATACACAGGGTTTGATCAA--CTAGCAGT--AC-AAAATATGGGTCCA  45

seq1  ATAAATTTAAACAGAAAAAAATAAAATATTCTCAGTACAATAAAATAAAT  99
      |||    | | | |||||||||||||||||||||||||| |||||| |||
seq2  ATA---GTGACCGGAAAAAAATAAAATATTCTCAGTACAGTAAAAT-AAT  91

seq1  GAAACCAAAGAAAAATTGTTGTTGATTGCAAAGTGCTTTCAACCCCTTCT  149
      |||  | |||||||| ||||||||||||||||||||||||||||||||| 
seq2  GAA--CCAAGAAAAA-TGTTGTTGATTGCAAAGTGCTTTCAACCCCTTC-  137

seq1  TACATATTTCAGAGAATTCATCATGAGTGGGGATGAGACACAAAGAAACC  199
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TACATATTTCAGAG-ATTCATCATGAGTGGGGATGAGACACAAAGAAACC  186

seq1  CAGCCCTGGCGGAGTATCCAATGGCATTTGGTGGCTACTAGGGAGGGGAG  249
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAG-CCTGGCGGAGTATCCAATGGCATTTGGTGGCTACTAGGGAGGGGAG  235

seq1  AGTCAGTTTCCTCAGGAGGTTTGTCATAGGAGCTTGCCTATACTCTAAAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGTTTCCTCAGGAGGTTTGTCATAGGAGCTTGCCTATACTCTAAAT  285

seq1  GTCTTACACGCCTGCAGAACTGGCATGCCTAAATGAGCTCTGTAGATTAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTACACGCCTGCAGAACTGGCATGCCTAAATGAGCTCTGTAGATTAA  335

seq1  AATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  385

seq1  TGAGTGTGAGAGAGAGAGGGGGGGGGGAGCATAGAGAGATAGAGAGAAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGTGAGAGAGAGAGGGGGGGGGGAGCATAGAGAGATAGAGAGAAAA  435

seq1  AGAGACATAGAGATATACAAAAAGACAGAGAGACAGAGTCAGACAGATAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACATAGAGATATACAAAAAGACAGAGAGACAGAGTCAGACAGATAC  485

seq1  AGAGACAGACAGAGACCCCATGAATTTCAAGACAGGAGACATTGGAAGGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACAGACAGAGACCCCATGAATTTCAAGACAGGAGACATTGGAAGGG  535

seq1  AAGTAGTAGAGGTGGGTGTGATCAACATATATTTTATACATGTATAAAAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGTAGAGGTGGGTGTGATCAACATATATTTTATACATGTATAAAAT  585

seq1  TGTGAAACAATATTTTTAAAGACAGAAGCAAAGCACTTACAAAGAAACAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAACAATATTTTTAAAGACAGAAGCAAAGCACTTACAAAGAAACAA  635

seq1  TATCCAGTGTATCCAATTTATCTTCACTGCCAAATTTAGCTTTAAAGTCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCAGTGTATCCAATTTATCTTCACTGCCAAATTTAGCTTTAAAGTCT  685

seq1  TGACCAAAAGCCAGTCTAAGTGAAAAGAGTCCTCCAATAACAAAATCTGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCAAAAGCCAGTCTAAGTGAAAAGAGTCCTCCAATAACAAAATCTGC  735

seq1  ATCTTGATAGTAGCCAGAAGAATCATGTTTAATCATGTAGAAATAACAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGATAGTAGCCAGAAGAATCATGTTTAATCATGTAGAAATAACAAA  785

seq1  TTTGTTCCTGGAGTAAAATGAGAAAAATCAGGGGAGAGAAAGCTATGAGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCCTGGAGTAAAATGAGAAAAATCAGGGGAGAGAAAGCTATGAGT  835

seq1  AATTTCATACTAAAATTGATAAATAATTGATAAGACCCAAATATATGTTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCATACTAAAATTGATAAATAATTGATAAGACCCAAATATATGTTC  885

seq1  AGTTGAGAATCTTAGGATAATTGACTCTGCTAGCACATCAGCAAACAAAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAGAATCTTAGGATAATTGACTCTGCTAGCACATCAGCAAACAAAT  935

seq1  AAAACATGTGCCAGTCTTTTCAGTGTAGATCAAGGTTATAAAGCATTGTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATGTGCCAGTCTTTTCAGTGTAGATCAAGGTTATAAAGCATTGTT  985

seq1  TTGTCCTGATACATGCCCACAAGTATCCAAACACTCAGTTCCCTGGAGTA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCTGATACATGCCCACAAGTATCCAAACACTCAGTTCCCTGGAGTA  1035

seq1  TAATCTGCTTTGCACCTACTTAGCCCTAGATCATGTCCCCTTCACAGAGT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTGCTTTGCACCTACTTAGCCCTAGATCATGTCCCCTTCACAGAGT  1085

seq1  CACTGAGTCCTCAAGGGCTCAGAAGCCTCTCACTTGGCACGTGGGAATTC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAGTCCTCAAGGGCTCAGAAGCCTCTCACTTGGCACGTGGGAATTC  1135

seq1: chr6_123774586_123775464
seq2: B6Ng01-209G17.g_364_1236

seq1  AATGGAGATTCTCCACAGATACTTATAAGAACAGCCAAGTTACACTCATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAGATTCTCCACAGATACTTATAAGAACAGCCAAGTTACACTCATA  50

seq1  CAAGAATTTATCAAGGCCTAGGAAATAATGGGGTTGTGGTATTGCATTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAATTTATCAAGGCCTAGGAAATAATGGGGTTGTGGTATTGCATTAT  100

seq1  TCATGAGAAGGTCTGCTAGAGCAGAACCCCCTGGTGCTAGCTTTCACAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAGAAGGTCTGCTAGAGCAGAACCCCCTGGTGCTAGCTTTCACAAG  150

seq1  GCTCAAAGGAGTAGCACAAATTGTGACTAGGGTGTGAAATCCTTACCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAAAGGAGTAGCACAAATTGTGACTAGGGTGTGAAATCCTTACCTGT  200

seq1  CATTAGCTGACTCTAGGCAGGGCTGTTTTATCTTTACTGTAAATATTACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGCTGACTCTAGGCAGGGCTGTTTTATCTTTACTGTAAATATTACC  250

seq1  TGGTTCCTGTAAGTCCTTTTGAAGTCATTCCTTTGTTTTGTGTCAGCTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCCTGTAAGTCCTTTTGAAGTCATTCCTTTGTTTTGTGTCAGCTAA  300

seq1  CTTCAATGTGCTTTGCCTACTGTGACATCCTACCCCTTTATTTTCTGTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAATGTGCTTTGCCTACTGTGACATCCTACCCCTTTATTTTCTGTAT  350

seq1  TATTTAAGACTGGTGTTCACTTTGTGACAATACATTCAGATTCTACACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAAGACTGGTGTTCACTTTGTGACAATACATTCAGATTCTACACAA  400

seq1  CCTCTTGTGTTGATTTTGTCTGTGATTTGCCAACTCATTGTCCACCTGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTGTGTTGATTTTGTCTGTGATTTGCCAACTCATTGTCCACCTGCA  450

seq1  ACCAGAGACCCATTCTATGCAGACAGGGACCAAAAAGGGTCTGCAGCACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAGACCCATTCTATGCAGACAGGGACCAAAAAGGGTCTGCAGCACT  500

seq1  ACATAAATACAATTGTGTCTTTAGTTGTTGTGTTACTCACCCCTATCCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAATACAATTGTGTCTTTAGTTGTTGTGTTACTCACCCCTATCCTG  550

seq1  TGGTGCATCATTTCCACATTCAGAATCATTTCTAGAAATTTCAACATTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCATCATTTCCACATTCAGAATCATTTCTAGAAATTTCAACATTCA  600

seq1  GAATTATTTCTTCTAATTCACACAATCAAAACCCTTTCTAGAATTTCCAT  650
      |||||||||||||||||||||||||||||| || ||||||||||||||||
seq2  GAATTATTTCTTCTAATTCACACAATCAAACCCTTTTCTAGAATTTCCAT  650

seq1  ATTTAAAACTATTTCTACAAATTCCATATTGAGAATCATTTTATAAATAC  700
      |||| ||||||||||||| |||||||||||||||||||||||||||||||
seq2  ATTT-AAACTATTTCTAC-AATTCCATATTGAGAATCATTTTATAAATAC  698

seq1  CTGTTTTATTTGCAATTTCTCCATCTGGACATGGGACACA-ATCAAAACA  749
      |||||||||||||||||||| ||||||||||||||| ||| ||| |||||
seq2  CTGTTTTATTTGCAATTTCT-CATCTGGACATGGGA-ACACATC-AAACA  745

seq1  ACAGAATGG-TTTCCCCTCAACAGCTGTTTTGCTAAATCCAAGTGGACAA  798
      ||||||||| |||||||||||||||||||||||||||||| |||||||||
seq2  ACAGAATGGATTTCCCCTCAACAGCTGTTTTGCTAAATCC-AGTGGACAA  794

seq1  CTTTGACTGCAAACAGATAAAGGAGTCTGTGTAGGAGACATGAGAAGAGG  848
      |||  ||||| |||||   ||| |||||  |||| | || || ||  | |
seq2  CTTGAACTGCCAACAGGATAAGCAGTCTTGGTAGAAAACTTG-GAGAAAG  843

seq1  GAAGGCAGTGAATTCATGACATTCAG-TATTA  879
      ||  |||||||||||||||||||||| |||||
seq2  GA--GCAGTGAATTCATGACATTCAGTTATTA  873