BAC Information

Click to search

BAC

Clone NameB6Ng01-209O18
Chromosome6 (Build37)
Map Location 19,715,305 - 19,842,126
singlet/doubletdoublet
Overlap genenone
Upstream geneEG545829, Lsm8, Ankrd7, LOC626180, Eif3s6-ps4
Downstream geneLOC100040838
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-209O18.bB6Ng01-209O18.g
ACCGA028403GA028404
length1,1361,133
definitionB6Ng01-209O18.b B6Ng01-209O18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,841,001 - 19,842,126)(19,715,305 - 19,716,435)
sequence
gaattctctcttaaaataccgcatacactaattgaatcaaaggaaacatt
tttgtggacaaacagaggaagctagtttttattaactcaccatctgtttc
tattgctcttaagttttggcccccaactgtggtgagtagaattttccctg
attatagcttcatattccattgaactttcaatatgcgccaatatttacat
tatgtcactaagaaatctctattttccagttcttgtaagttaatgccaat
aaacaaaaagatactagaggattgtcatcattatgaaagggcctgccatc
ttacgaagaaattccatggcccgaaaccttgagtgaacttcagatagtcc
ctccatctatgcctatgtccttcataatatcaaagatattactctaaaaa
aattataaggaatgatgtctgtttattttttgacatatcaatatttttaa
atctgtctagcaagttttctgaccaccaaacaaatacctttcttcttgat
ttaggtaacagagtaccaaaatataatctataagaaaccagtacccatgt
tttgaaggctagaaaatgtgaaagaaaagaaacatctatttggctgggag
tttagctcaatgaatgcctggcgagccttcatgaggttctaggttccatc
cttagtaccatcaaaataaaaaatctgtctctctctatatatatctatta
actgatgtaaatagtgatgtgtatgtctatgttctagtctgtagtattta
atcatgttatactatttaaattaatacaagaacttcaaaaaaaaaaaaaa
aaaaagaaagaaagtaagaaagaaaaaagaaatcagtacccaaacttctt
tgttgtctataggaagggaggcctcaaaattcagaaggttacttgttcta
agttttaagtactttccatccaccatcataaagacatgaaaaaacatatt
tttatttatgaaaagccagttaaccaatgcgacaacttatgattgtcatg
ccatctgattctttaataagacttatccaacttttggttcctcagcactt
ggttgaagactatatccttgtctcacttcttttcttgttaagaaatatga
atagaaatttccctgtcttttttaatacttgtacaa

gaattcaaactggaaatcaaccacaagatctgagatgttttatttttgta
attagtaaacattgggtatagataccgaaagaattaatgatgcatataga
tataaaatatgaagaaataatattgtacgcatgaggtgttaaatactgtg
tgttgctgaatataattaccattgttcatagattggagtcttagacatta
tctttttctttctcttattgttttgattaatataaactaattatatacag
actttacatcaaatcacacctccattttcagataattttgctccaggaga
tggcactgtagtgctttgttttatagtgcagataccaaatctgtaagcca
caggttattttcacaatgtgttgataatctgagcaaataaacaaactccc
ttgtcaatatataatctaccattatggatctcttatataaggaatttttt
taaggtttatatttgaattaggatgtgttctacatcaatgttttatgatt
ttaatgaaacctttattttatgaatatatttgaaaaatcacgaaacccaa
acaatgagagcctacaatatttataattcctgtgtctgagactgtaacgt
tacacaaagaaatataaaacccaccaatgcatatgaaattagagttgata
aatgctagtagtattattgacagtgattataagttcattcaatattgtat
aatttcagcaattttagttgatacatatattactatatgaaggacttctg
acttcacatgaaaaagatgtaaataaactcctatagtagtctgaattcaa
cataattgttgttcatcaagtttttatatttgtacttattaccctctatt
cattttcttttagattctatgaatggggatttttttttcttgggtttttt
tttttgttgtgtgtggtgtttgttttttattttttatgaaaattagattc
cttttcatacaatacattccatccatattttccccttcttctccctttcc
tcccaggtttcctggtcccccctctcttgatacaggatctattcaacttt
tgtttcccttctgaaagagccagagtcacaccaatccacacccaggcagg
atacattgagacaggaaaatccccccatattga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_19841001_19842126
seq2: B6Ng01-209O18.b_48_1183 (reverse)

seq1  TTGTACAAGTATT-AAAAAGACAGGGAAATTTCTATTCATATTTCTTAAC  49
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TTGTACAAGTATTAAAAAAGACAGGGAAATTTCTATTCATATTTCTTAAC  50

seq1  AAGAAAAG-AGTGAGACAGGATTATAGTC-TCAACCAAGTGCTGAGGAAC  97
      |||||||| ||||||||| |  ||||||| ||||||||||||||||||||
seq2  AAGAAAAGAAGTGAGACAAGGATATAGTCTTCAACCAAGTGCTGAGGAAC  100

seq1  CAAAAGTT-GATAAGTCTTA-TAAAGAATCAGATGGCATGGACATCATAA  145
      |||||||| ||||||||||| |||||||||||||||||||   |||||||
seq2  CAAAAGTTGGATAAGTCTTATTAAAGAATCAGATGGCATGACAATCATAA  150

seq1  GTTGTTCGCATTGGTTAACTGGCTTTTCATAATTAAAAATATGTTTTTTC  195
      |||| ||||||||||||||||||||||||||| |||||||||||||||||
seq2  GTTG-TCGCATTGGTTAACTGGCTTTTCATAAATAAAAATATGTTTTTTC  199

seq1  ATGTCTTTATGATGGT-GATGGAAAGTACTTAAAACTTAGAACAAGT-AT  243
      |||||||||||||||| |||||||||||||||||||||||||||||| | 
seq2  ATGTCTTTATGATGGTGGATGGAAAGTACTTAAAACTTAGAACAAGTAAC  249

seq1  CTTCTGAATTTTGAGGCCTCCCTTCCTATAGACAAC-AAGAAGTTTGGGT  292
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CTTCTGAATTTTGAGGCCTCCCTTCCTATAGACAACAAAGAAGTTTGGGT  299

seq1  ACTGATTTCTTTTTTCTTTCTTACTTTCTTTC--TTTTTTTTTTTTTTTT  340
      ||||||||||||||||||||||||||||||||  ||||||||||||||||
seq2  ACTGATTTCTTTTTTCTTTCTTACTTTCTTTCTTTTTTTTTTTTTTTTTT  349

seq1  TGAAGTTCTTGTATTAATTT-AATAGTATAACATGATTAAATACTACAGA  389
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TGAAGTTCTTGTATTAATTTAAATAGTATAACATGATTAAATACTACAGA  399

seq1  CTAGAACATAGACATACACATCACTATTTACATCAGTTAATAGATATATA  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAACATAGACATACACATCACTATTTACATCAGTTAATAGATATATA  449

seq1  TAGAGAGAGACAGATTTTTTATTTTGATGGTACTAAGGATGGAACCTAGA  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAGAGACAGATTTTTTATTTTGATGGTACTAAGGATGGAACCTAGA  499

seq1  ACCTCATGAAGGCTCGCCAGGCATTCATTGAGCTAAACTCCCAGCCAAAT  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCATGAAGGCTCGCCAGGCATTCATTGAGCTAAACTCCCAGCCAAAT  549

seq1  AGATGTTTCTTTTCTTTCACATTTTCTAGCCTTCAAAACATGGGTACTGG  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTTTCTTTTCTTTCACATTTTCTAGCCTTCAAAACATGGGTACTGG  599

seq1  TTTCTTATAGATTATATTTTGGTACTCTGTTACCTAAATCAAGAAGAAAG  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTATAGATTATATTTTGGTACTCTGTTACCTAAATCAAGAAGAAAG  649

seq1  GTATTTGTTTGGTGGTCAGAAAACTTGCTAGACAGATTTAAAAATATTGA  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTGTTTGGTGGTCAGAAAACTTGCTAGACAGATTTAAAAATATTGA  699

seq1  TATGTCAAAAAATAAACAGACATCATTCCTTATAATTTTTTTAGAGTAAT  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCAAAAAATAAACAGACATCATTCCTTATAATTTTTTTAGAGTAAT  749

seq1  ATCTTTGATATTATGAAGGACATAGGCATAGATGGAGGGACTATCTGAAG  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTGATATTATGAAGGACATAGGCATAGATGGAGGGACTATCTGAAG  799

seq1  TTCACTCAAGGTTTCGGGCCATGGAATTTCTTCGTAAGATGGCAGGCCCT  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTCAAGGTTTCGGGCCATGGAATTTCTTCGTAAGATGGCAGGCCCT  849

seq1  TTCATAATGATGACAATCCTCTAGTATCTTTTTGTTTATTGGCATTAACT  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAATGATGACAATCCTCTAGTATCTTTTTGTTTATTGGCATTAACT  899

seq1  TACAAGAACTGGAAAATAGAGATTTCTTAGTGACATAATGTAAATATTGG  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGAACTGGAAAATAGAGATTTCTTAGTGACATAATGTAAATATTGG  949

seq1  CGCATATTGAAAGTTCAATGGAATATGAAGCTATAATCAGGGAAAATTCT  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCATATTGAAAGTTCAATGGAATATGAAGCTATAATCAGGGAAAATTCT  999

seq1  ACTCACCACAGTTGGGGGCCAAAACTTAAGAGCAATAGAAACAGATGGTG  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACCACAGTTGGGGGCCAAAACTTAAGAGCAATAGAAACAGATGGTG  1049

seq1  AGTTAATAAAAACTAGCTTCCTCTGTTTGTCCACAAAAATGTTTCCTTTG  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAATAAAAACTAGCTTCCTCTGTTTGTCCACAAAAATGTTTCCTTTG  1099

seq1  ATTCAATTAGTGTATGCGGTATTTTAAGAGAGAATTC  1126
      |||||||||||||||||||||||||||||||||||||
seq2  ATTCAATTAGTGTATGCGGTATTTTAAGAGAGAATTC  1136


seq1: chr6_19715305_19716435
seq2: B6Ng01-209O18.g_71_1203

seq1  GAATTCAAACTGGAAATCAACCACAAGATCTGAGATGTTTTATTTTTGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACTGGAAATCAACCACAAGATCTGAGATGTTTTATTTTTGTA  50

seq1  ATTAGTAAACATTGGGTATAGATACCGAAAGAATTAATGATGCATATAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTAAACATTGGGTATAGATACCGAAAGAATTAATGATGCATATAGA  100

seq1  TATAAAATATGAAGAAATAATATTGTACGCATGAGGTGTTAAATACTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAATATGAAGAAATAATATTGTACGCATGAGGTGTTAAATACTGTG  150

seq1  TGTTGCTGAATATAATTACCATTGTTCATAGATTGGAGTCTTAGACATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCTGAATATAATTACCATTGTTCATAGATTGGAGTCTTAGACATTA  200

seq1  TCTTTTTCTTTCTCTTATTGTTTTGATTAATATAAACTAATTATATACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTCTTTCTCTTATTGTTTTGATTAATATAAACTAATTATATACAG  250

seq1  ACTTTACATCAAATCACACCTCCATTTTCAGATAATTTTGCTCCAGGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTACATCAAATCACACCTCCATTTTCAGATAATTTTGCTCCAGGAGA  300

seq1  TGGCACTGTAGTGCTTTGTTTTATAGTGCAGATACCAAATCTGTAAGCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACTGTAGTGCTTTGTTTTATAGTGCAGATACCAAATCTGTAAGCCA  350

seq1  CAGGTTATTTTCACAATGTGTTGATAATCTGAGCAAATAAACAAACTCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTATTTTCACAATGTGTTGATAATCTGAGCAAATAAACAAACTCCC  400

seq1  TTGTCAATATATAATCTACCATTATGGATCTCTTATATAAGGAATTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAATATATAATCTACCATTATGGATCTCTTATATAAGGAATTTTTT  450

seq1  TAAGGTTTATATTTGAATTAGGATGTGTTCTACATCAATGTTTTATGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTTTATATTTGAATTAGGATGTGTTCTACATCAATGTTTTATGATT  500

seq1  TTAATGAAACCTTTATTTTATGAATATATTTGAAAAATCACGAAACCCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGAAACCTTTATTTTATGAATATATTTGAAAAATCACGAAACCCAA  550

seq1  ACAATGAGAGCCTACAATATTTATAATTCCTGTGTCTGAGACTGTAACGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGAGAGCCTACAATATTTATAATTCCTGTGTCTGAGACTGTAACGT  600

seq1  TACACAAAGAAATATAAAACCCACCAATGCATATGAAATTAGAGTTGATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAAAGAAATATAAAACCCACCAATGCATATGAAATTAGAGTTGATA  650

seq1  AATGCTAGTAGTATTATTGACAGTGATTATAAGTTCATTCAATATTGTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTAGTAGTATTATTGACAGTGATTATAAGTTCATTCAATATTGTAT  700

seq1  AATTTCAGCAATTTTAGTTGATACATATATTACTATATGAAGGACTTCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCAGCAATTTTAGTTGATACATATATTACTATATGAAGGACTTCTG  750

seq1  ACTTCACATGAAAAAGATGTAAATAAACTCCTATAGTAGTCTGAATTCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCACATGAAAAAGATGTAAATAAACTCCTATAGTAGTCTGAATTCAA  800

seq1  CATAATTGTTGTTCATC-AGTTTTTATATTTGTACTTATTACCCTCTATT  849
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CATAATTGTTGTTCATCAAGTTTTTATATTTGTACTTATTACCCTCTATT  850

seq1  CA-TTTCTTTTAGATTCTATGAATGGG--ATTTTTTTTCTTGGTTTTTTT  896
      || ||||||||||||||||||||||||   ||||||||||||| ||||||
seq2  CATTTTCTTTTAGATTCTATGAATGGGGATTTTTTTTTCTTGGGTTTTTT  900

seq1  TTTTGTTGTTGTTGTTGTTGTTTTGTTTTTTTATTTTTTTTGAAAA-TAG  945
      |||  |||||||   ||| || ||  ||||||||||||| |||||| |||
seq2  TTT--TTGTTGT--GTGTGGTGTTTGTTTTTTATTTTTTATGAAAATTAG  946

seq1  ATTCCTTTTCATACAATACAATCCATCCATATTTTCCCCT--CTCTCCC-  992
      |||||||||||||||||||| |||||||||||||||||||   |||||| 
seq2  ATTCCTTTTCATACAATACATTCCATCCATATTTTCCCCTTCTTCTCCCT  996

seq1  TTCCTCCCAGGTTTTCCTGGTCCCCCCTCTC-TGATACA-GATCTATTCA  1040
      ||||||||||| ||||||||||||||||||| ||||||| ||||||||||
seq2  TTCCTCCCAGG-TTTCCTGGTCCCCCCTCTCTTGATACAGGATCTATTCA  1045

seq1  ACTTTTGTTTCCCTTCTGAAAAGAGCCAAGAGTCAACAACCAAACACA-A  1089
      |||||||||||||||||| |||||||| |||||| ||| | |  ||||  
seq2  ACTTTTGTTTCCCTTCTG-AAAGAGCC-AGAGTC-ACACCAATCCACACC  1092

seq1  CAAGCAAGATACAATGAGACAAGGAAAATACCCCCATATTGA  1131
      || ||| |||||| |||||| |||||||| ||||||||||||
seq2  CAGGCAGGATACATTGAGAC-AGGAAAATCCCCCCATATTGA  1133


| Home | SequenceCutter | Blast | Download |