BAC Information

Click to search

BAC

Clone NameB6Ng01-210J16
Chromosome6 (Build37)
Map Location 142,322,517 - 142,518,305
singlet/doubletdoublet
Overlap geneRecql, Golt1b, B230216G23Rik, Gys2, Ldhb, Kcnj8
Upstream genePde3a, Slco1c1, Slco1b2, EG435927, Slco1a4, LOC100042750, EG664913, Slco1a1, EG625716, Slco1a6, Slco1a5, Iapp, BC027061
Downstream geneAbcc9, 5330439B14Rik, Cmas, Gm766, EG665037, St8sia1, LOC665056, 5730419I09Rik, Etnk1, D6Ertd474e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-210J16.bB6Ng01-210J16.g
ACCGA028903GA028904
length1,1031,101
definitionB6Ng01-210J16.b B6Ng01-210J16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(142,322,517 - 142,323,600)(142,517,201 - 142,518,305)
sequence
gaattccttaacagaatttacaaggaacagcctggaagtggtctgtcctt
cagataaggtaagacagtccatctccacacacatatgtgctctttgtaac
tcatcctctgcattaaaatagactgtacaatgaaaggtggtgtatatata
tgtacatgtgtgcgtgtcacctggagtcagcatcagaggtcagagggaac
cttccttctttatatgccccaccttatcttttcaagacacaatcttgctg
agacactcatcaattaaaccaggctagctggtcggcgagctccagggagc
ttcgtgtcactaatcaaactcaggttgccctcatgctgcaagccatgtac
ccactgtgtacccactgaaccatctcgcagggcctccttgcgtttacact
acgtaacaaaccatgttagcaaatgcttcctctgaagtgctagacaggag
aaaggctgtctgtcatgtggaatgcagtctccatgagcactaggctgagt
tgctgtaggactgaagcaatacctaagagaataagcttgctgatccaaca
agtttactattgacacggaacccaaagtctatgacttcatgtacaataca
atactagcttttcatagtttgtgggtttttttttaatctttataagtaaa
aacaggcatggggcacacaaaaatagacagtgtccaatactaggctgtga
gcagaagcctgcggctcctgacatagtatttagggtttataccttacagg
caactcagatgccgatgagactcccacatcagttaagactttacatctga
aaactgaaaccacactcccataccttagagctggaagcattcaacatagt
agctgaaattcccaactgttttaaaaccatcagctgatcttccataagag
agatgagtgggcaaatcacaagtgtaaacctaaaagtagaaggacaaagc
aaaagctacttttcaccttctcccactcgcaccacaagcgctcccagcag
cggctccaggtagcactttttcttgccacccggccaggtccttgcagttg
gccaattgcagaattttatcaacttcaagaaaataaagagagattgggca
gaa
gaattcctgactcccccccccccaacaacaacaacaaacaacaacaacaa
aaaaaaaaaaccacagttcgttttcaccacaaggatgtccagtgtgcacc
aggaaatattcccagtccatccaaagcactgtgcaaatacaagaaatatt
ttttttctgtaaagcagtcttaattttaaaatacactaaaaataaaataa
cagaagtaaataaaagcccttctttatcaaggttattttggcatctctga
cagatttttttagatttaaaaaaattaaagcttattctaaaatttagaag
agagagttgtagtgaaaattagtccagattttcacaaacggggttgaata
gacagcaagtggatattgaggtctctttccaaagcttccacagagcagga
acaaggcagcttttaggttatctaaatttgacttctgcatttagggatgc
ttcaaagtcagctaacacgcactggggttccacgtctctcttctctattc
ccaagaggccccaaacactgcaatggggcaaactttttagtttgtttctt
tgggtggagacataattgctaaggcagagagactgagggcgctccagcca
ggcaggaaaggacttccagcggtcctggatcctataaaagtagcagagca
tggcatagacacccatagctgggagcagagctcctcatgatcttacttgc
ccttccacttggccaagtaattgccaggccgacatgtcaaagagagacat
caccttagaccacacacagattccagctcagatttgtcatgagagcaatg
tactagaaagacctgggctttaccactgggcagataggattttctttatt
caagcttttgcctcaacaacaatgagaataagaaccccaggtgagcagac
aactagggacatggagaacaaagtcctctcttgtgtttaaatatttcggc
tgtgtttaagagatttgatgctgtaatgcttgagtctctcttcatggact
tactgggcctggacttgcctgctgagggcattcatattccaacatgttca
gcaacgggaagaaaacgttcttgaacagagaggtagaaaacgatcatgac
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_142322517_142323600
seq2: B6Ng01-210J16.b_46_1148

seq1  GAATTCCTTAACAGAATTTACAAGGAACAGCCTGGAAGTGGTCTGTCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTAACAGAATTTACAAGGAACAGCCTGGAAGTGGTCTGTCCTT  50

seq1  CAGATAAGGTAAGACAGTCCATCTCCACACACATATGTGCTCTTTGTAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAAGGTAAGACAGTCCATCTCCACACACATATGTGCTCTTTGTAAC  100

seq1  TCATCCTCTGCATTAAAATAGACTGTACAATGAAAGGTGGTGTATATATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCTCTGCATTAAAATAGACTGTACAATGAAAGGTGGTGTATATATA  150

seq1  TGTACATGTGTGCGTGTCACCTGGAGTCAGCATCAGAGGTCAGAGGGAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACATGTGTGCGTGTCACCTGGAGTCAGCATCAGAGGTCAGAGGGAAC  200

seq1  CTTCCTTCTTTATATGCCCCACCTTATCTTTTCAAGACACAATCTTGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTCTTTATATGCCCCACCTTATCTTTTCAAGACACAATCTTGCTG  250

seq1  AGACACTCATCAATTAAACCAGGCTAGCTGGTCGGCGAGCTCCAGGGAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACTCATCAATTAAACCAGGCTAGCTGGTCGGCGAGCTCCAGGGAGC  300

seq1  TTCGTGTCACTAATCAAACTCAGGTTGCCCTCATGCTGCAAGCCATGTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGTGTCACTAATCAAACTCAGGTTGCCCTCATGCTGCAAGCCATGTAC  350

seq1  CCACTGTGTACCCACTGAACCATCTCGCAGGGCCTCCTTGCGTTTACACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGTGTACCCACTGAACCATCTCGCAGGGCCTCCTTGCGTTTACACT  400

seq1  ACGTAACAAACCATGTTAGCAAATGCTTCCTCTGAAGTGCTAGACAGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTAACAAACCATGTTAGCAAATGCTTCCTCTGAAGTGCTAGACAGGAG  450

seq1  AAAGGCTGTCTGTCATGTGGAATGCAGTCTCCATGAGCACTAGGCTGAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCTGTCTGTCATGTGGAATGCAGTCTCCATGAGCACTAGGCTGAGT  500

seq1  TGCTGTAGGACTGAAGCAATACCTAAGAGAATAAGCTTGCTGATCCAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTAGGACTGAAGCAATACCTAAGAGAATAAGCTTGCTGATCCAACA  550

seq1  AGTTTACTATTGACACGGAACCCAAAGTCTATGACTTCATGTACAATACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTACTATTGACACGGAACCCAAAGTCTATGACTTCATGTACAATACA  600

seq1  ATACTAGCTTTTCATAGTTTGTGGGTTTTTTTTTAATCTTTATAAGTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTAGCTTTTCATAGTTTGTGGGTTTTTTTTTAATCTTTATAAGTAAA  650

seq1  AACAGGCATGGGGCACACAAAAATAGACAGTGTCCAATACTAGGCTGTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGCATGGGGCACACAAAAATAGACAGTGTCCAATACTAGGCTGTGA  700

seq1  GCAGAAGCCTGCGGCTCCTGACATAGTATTTAGGGTTTATACCTTACAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAGCCTGCGGCTCCTGACATAGTATTTAGGGTTTATACCTTACAGG  750

seq1  CAACTCAGATGCCGATGAGACTCCCACATCAGTTAAGACTTTACATCTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCAGATGCCGATGAGACTCCCACATCAGTTAAGACTTTACATCTGA  800

seq1  AAACTGAAACCACACTCCCATACCTTAGAGCTGGAAGCATTCAACATAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGAAACCACACTCCCATACCTTAGAGCTGGAAGCATTCAACATAGT  850

seq1  AGCTGAAATTCCCAACTGTTTTAAAACCATCAGCTGATCTTCCATAAGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAAATTCCCAACTGTTTTAAAACCATCAGCTGATCTTCCATAAGAG  900

seq1  AGATGAGTGGGCAAATCACAAGTGTAAAACCTAAAAG-AGAAAGACAAAG  949
      ||||||||||||||||||||||||| ||||||||||| |||| |||||||
seq2  AGATGAGTGGGCAAATCACAAGTGT-AAACCTAAAAGTAGAAGGACAAAG  949

seq1  CAAAAGCTAC-TTTCACC-TCT-CCACTCGCACCAC-AGCGCTCCCA-CA  994
      |||||||||| ||||||| ||| ||||||||||||| |||||||||| ||
seq2  CAAAAGCTACTTTTCACCTTCTCCCACTCGCACCACAAGCGCTCCCAGCA  999

seq1  GC-GCTCCA-GTAGC-CACTTTCT--GCACCCGG-CAGG-CCCTGCAGTT  1037
      || |||||| ||||| |  |||||   ||||||| |||| || |||||||
seq2  GCGGCTCCAGGTAGCACTTTTTCTTGCCACCCGGCCAGGTCCTTGCAGTT  1049

seq1  -GCCAA-TGCAGA--TTTATCAA-TTCAAG-AAATAAAGAGAGA-TGGGC  1080
       ||||| ||||||  |||||||| |||||| ||||||||||||| |||||
seq2  GGCCAATTGCAGAATTTTATCAACTTCAAGAAAATAAAGAGAGATTGGGC  1099

seq1  AGAA  1084
      ||||
seq2  AGAA  1103

seq1: chr6_142517201_142518305
seq2: B6Ng01-210J16.g_71_1171 (reverse)

seq1  TGTCATGATCGTTTTTCCTACTTCTCTTTGTCAGGACCTTTTTTCTTTCC  50
      |||||||||||||||  |||| ||||| | ||| || | ||||   ||||
seq2  TGTCATGATCGTTTT--CTACCTCTCTGT-TCAAGAACGTTTT--CTTCC  45

seq1  CGTTTGCTGGAACCTTGTTTGAATATGAATGCCCTCAGCAGCCAAGTCAA  100
      || ||||||  | | |||| ||||||||||||||||||||| |||||| |
seq2  CG-TTGCTG--AACATGTTGGAATATGAATGCCCTCAGCAGGCAAGTCCA  92

seq1  GG-CCAGTAAGTCCATG-AGAGAGACTC-AGCATTACAGCATCAAATCTC  147
      || |||||||||||||| |||||||||| |||||||||||||||||||||
seq2  GGCCCAGTAAGTCCATGAAGAGAGACTCAAGCATTACAGCATCAAATCTC  142

seq1  TTAAACACAGCCGAAATATTTAAACAC-AGAGAGGACTTTGTTCTCCATG  196
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTAAACACAGCCGAAATATTTAAACACAAGAGAGGACTTTGTTCTCCATG  192

seq1  TCCCTAGTTGTCTGCTCACCTGGGGTTCTTATTCTCATTGTTGTTGAGGC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTAGTTGTCTGCTCACCTGGGGTTCTTATTCTCATTGTTGTTGAGGC  242

seq1  AAAAGCTTGAATAAAGAAAATCCTATCTGCCCAGTGGTAAAGCCCAGGTC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCTTGAATAAAGAAAATCCTATCTGCCCAGTGGTAAAGCCCAGGTC  292

seq1  TTTCTAGTACATTGCTCTCATGACAAATCTGAGCTGGAATCTGTGTGTGG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAGTACATTGCTCTCATGACAAATCTGAGCTGGAATCTGTGTGTGG  342

seq1  TCTAAGGTGATGTCTCTCTTTGACATGTCGGCCTGGCAATTACTTGGCCA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGGTGATGTCTCTCTTTGACATGTCGGCCTGGCAATTACTTGGCCA  392

seq1  AGTGGAAGGGCAAGTAAGATCATGAGGAGCTCTGCTCCCAGCTATGGGTG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAAGGGCAAGTAAGATCATGAGGAGCTCTGCTCCCAGCTATGGGTG  442

seq1  TCTATGCCATGCTCTGCTACTTTTATAGGATCCAGGACCGCTGGAAGTCC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGCCATGCTCTGCTACTTTTATAGGATCCAGGACCGCTGGAAGTCC  492

seq1  TTTCCTGCCTGGCTGGAGCGCCCTCAGTCTCTCTGCCTTAGCAATTATGT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGCCTGGCTGGAGCGCCCTCAGTCTCTCTGCCTTAGCAATTATGT  542

seq1  CTCCACCCAAAGAAACAAACTAAAAAGTTTGCCCCATTGCAGTGTTTGGG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACCCAAAGAAACAAACTAAAAAGTTTGCCCCATTGCAGTGTTTGGG  592

seq1  GCCTCTTGGGAATAGAGAAGAGAGACGTGGAACCCCAGTGCGTGTTAGCT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTTGGGAATAGAGAAGAGAGACGTGGAACCCCAGTGCGTGTTAGCT  642

seq1  GACTTTGAAGCATCCCTAAATGCAGAAGTCAAATTTAGATAACCTAAAAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTGAAGCATCCCTAAATGCAGAAGTCAAATTTAGATAACCTAAAAG  692

seq1  CTGCCTTGTTCCTGCTCTGTGGAAGCTTTGGAAAGAGACCTCAATATCCA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTTGTTCCTGCTCTGTGGAAGCTTTGGAAAGAGACCTCAATATCCA  742

seq1  CTTGCTGTCTATTCAACCCCGTTTGTGAAAATCTGGACTAATTTTCACTA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTGTCTATTCAACCCCGTTTGTGAAAATCTGGACTAATTTTCACTA  792

seq1  CAACTCTCTCTTCTAAATTTTAGAATAAGCTTTAATTTTTTTAAATCTAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCTCTCTTCTAAATTTTAGAATAAGCTTTAATTTTTTTAAATCTAA  842

seq1  AAAAATCTGTCAGAGATGCCAAAATAACCTTGATAAAGAAGGGCTTTTAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCTGTCAGAGATGCCAAAATAACCTTGATAAAGAAGGGCTTTTAT  892

seq1  TTACTTCTGTTATTTTATTTTTAGTGTATTTTAAAATTAAGACTGCTTTA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTCTGTTATTTTATTTTTAGTGTATTTTAAAATTAAGACTGCTTTA  942

seq1  CAGAAAAAAAATATTTCTTGTATTTGCACAGTGCTTTGGATGGACTGGGA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAAAAAATATTTCTTGTATTTGCACAGTGCTTTGGATGGACTGGGA  992

seq1  ATATTTCCTGGTGCACACTGGACATCCTTGTGGTGAAAACGAACTGTGGT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCCTGGTGCACACTGGACATCCTTGTGGTGAAAACGAACTGTGGT  1042

seq1  TTTTTTTTTTTGTTGTTGTTGTTTGTTGTTGTTGTTGGGGGGGGGGGAGT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTGTTGTTGTTGTTTGTTGTTGTTGTTGGGGGGGGGGGAGT  1092

seq1  CAGGAATTC  1105
      |||||||||
seq2  CAGGAATTC  1101