BAC Information

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BAC

Clone NameB6Ng01-210L24
Chromosome6 (Build37)
Map Location 47,357,731 - 47,459,290
singlet/doubletdoublet
Overlap geneA930035D04Rik, Cul1
Upstream geneCntnap2, Rbpsuh-rs3, LOC622745, LOC100041064, LOC100041078
Downstream geneEzh2, Rn4.5s, EG384379, Pdia4, LOC100041154, Zfp786, Zfp398, Zfp282, Zfp212, A230106D06Rik, AI894139, LOC623601, Zfp777, Zfp746, LOC665990, Krba1, Zfp467, Sspo
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-210L24.bB6Ng01-210L24.g
ACCGA029008GA029009
length1,1271,152
definitionB6Ng01-210L24.b B6Ng01-210L24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,357,731 - 47,358,858)(47,458,119 - 47,459,290)
sequence
ggaattcttcatcacatgtcctttcacttacttgttttagcaaaacaccc
tttctcctgtgtctgcttcagctccacattctttcatgagtctgccttag
cctctcacctgtgtctacttcagctaaatgttttttcatgtgtttgcccc
agcaaaacaccatccaacaaactttccaaagaccccttaagtttccactt
cactacagaacttccaagatggtctctgcaggtgattttgtcccaactct
aacctagttttcacactaccattaaaatttagtaaaatccgaccatgtca
tttgctttctaaaagtataacaatggtcactatttctcttaaagtaaata
aatttctgattatgataagatctaacataatcagctctcatgatccctcc
tccctcttcccatactgatctcctgtctctgctaaatcacttcccaagcc
acactagtcatttctggtttggatcctagcacacaccctattgtttctct
tctgtgcccagaagcatctcttcccttgagcttttcaaactgtcactcct
gagatgtccccaccctcctcatccttcagtcctcagctcagtgtcatttg
ctgtagaatgatgggcttcatccttccatgttgaatgtccatcctctaca
gcacattcaatgctctatcagtgcttctttgtttcctgctgcagagatgg
gttctgctttcatttagaatggtttaaatgtgctttattgcctgtctcca
aaccagggtggggagtctttgaagaaccttgaaggccagctggcatatgg
aaggagttcagtgatatttcctgacggaattaaatgatgccatgcttctt
tcccccgagactacaggtcagtgtttttagatagcaggaaataatgcaat
tcacggaaaatgaatacccagcgaagcttaaaatcatgcctcctgtcttt
gctcagagactctcatcgtgagattcatgcttgctcttctcagaggccta
tttcaggaagctctgtgggacagctcttgagactcttcagtatagagaac
cttgactcttttgtagctatcagaacagcccatgtgttgcacaaatacga
gactctggatcttaataacatctgaca
gaattccaggacagccagggctatacagagaaaccctgtcttgaaaaaaa
caaaaaaaaaacaaaaacaaaaaaaagtcaaaacaggttctctgtatcgg
taaaactgtacaaagattcaccacacacacctgcagttggcatgtgaaaa
taatgggctcaattgcttttcagtcaggtcctacttacatttagagcagc
ttctccacacttctcaattgctgcaagaccctgattatgaatatgtgtct
ctagtagttttttcaattctcctaggccatcctgaattctagatacaaga
ttatacatgcggcccaaatctgaaagaaaaaaaggaaccaattgtatgca
tggaaaccaactgtgcatacttattctgttcattaagtacttatatcaag
tgaaaaacactgtgaaataggaaaccatcttctagatctggtgtactttg
ttaaaatcaacaacggggtcaggttattaaaattatatttcccctttacc
acaagaatctgctaatgtaccattgaggaaaagcactgaatgctttctaa
aatcttgataagctatttatgcccccaaaaggtactaaaatatttgccta
aaaaataaacttaatatagatacctctttcaactataagtcacaaaagga
atcctcaaatttttcatttcatatgttttcaatttatggtaaagatggaa
agtcctaaatcccaaaacaatgtgactgaatcactaacagctcccaccag
caccgaggaacaaataagggaactaaaaacaaaacaaaaacatcttttca
tcttttaaaaggatagaaggaggaatactcaaacataaaaaacaaaacaa
tctgcccaccattggtaataccaacagaagtgtatggaacaaattatatt
caccttcattcttgtcagcatccaataaattctgaaactctgtgtgaaaa
atttccaagtgtttttcaatgaggacctgctcacattcccgtgctagttc
atctgtgtgctctcgtggaggtaaacctgactcctccgctgttctcagca
acgagcttcagcctgtagaaaattcaatcaagttaacatgatgctgctca
ctttaagactagtatgtgaacaacaagtagtcacaaattcaggtaagcat
ga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_47357731_47358858
seq2: B6Ng01-210L24.b_51_1176

seq1  GAATTCTTCATCACATGTCCTTTCACTTACTTGTTTTAGCAAAACACCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCATCACATGTCCTTTCACTTACTTGTTTTAGCAAAACACCCT  50

seq1  TTCTCCTGTGTCTGCTTCAGCTCCACATTCTTTCATGAGTCTGCCTTAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTGTGTCTGCTTCAGCTCCACATTCTTTCATGAGTCTGCCTTAGC  100

seq1  CTCTCACCTGTGTCTACTTCAGCTAAATGTTTTTTCATGTGTTTGCCCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCACCTGTGTCTACTTCAGCTAAATGTTTTTTCATGTGTTTGCCCCA  150

seq1  GCAAAACACCATCCAACAAACTTTCCAAAGACCCCTTAAGTTTCCACTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAACACCATCCAACAAACTTTCCAAAGACCCCTTAAGTTTCCACTTC  200

seq1  ACTACAGAACTTCCAAGATGGTCTCTGCAGGTGATTTTGTCCCAACTCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAGAACTTCCAAGATGGTCTCTGCAGGTGATTTTGTCCCAACTCTA  250

seq1  ACCTAGTTTTCACACTACCATTAAAATTTAGTAAAATCCGACCATGTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGTTTTCACACTACCATTAAAATTTAGTAAAATCCGACCATGTCAT  300

seq1  TTGCTTTCTAAAAGTATAACAATGGTCACTATTTCTCTTAAAGTAAATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTCTAAAAGTATAACAATGGTCACTATTTCTCTTAAAGTAAATAA  350

seq1  ATTTCTGATTATGATAAGATCTAACATAATCAGCTCTCATGATCCCTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGATTATGATAAGATCTAACATAATCAGCTCTCATGATCCCTCCT  400

seq1  CCCTCTTCCCATACTGATCTCCTGTCTCTGCTAAATCACTTCCCAAGCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTTCCCATACTGATCTCCTGTCTCTGCTAAATCACTTCCCAAGCCA  450

seq1  CACTAGTCATTTCTGGTTTGGATCCTAGCACACACCCTATTGTTTCTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGTCATTTCTGGTTTGGATCCTAGCACACACCCTATTGTTTCTCTT  500

seq1  CTGTGCCCAGAAGCATCTCTTCCCTTGAGCTTTTCAAACTGTCACTCCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCCCAGAAGCATCTCTTCCCTTGAGCTTTTCAAACTGTCACTCCTG  550

seq1  AGATGTCCCCACCCTCCTCATCCTTCAGTCCTCAGCTCAGTGTCATTTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTCCCCACCCTCCTCATCCTTCAGTCCTCAGCTCAGTGTCATTTGC  600

seq1  TGTAGAATGATGGGCTTCATCCTTCCATGTTGAATGTCCATCCTCTACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAATGATGGGCTTCATCCTTCCATGTTGAATGTCCATCCTCTACAG  650

seq1  CACATTCAATGCTCTATCAGTGCTTCTTTGTTTCCTGCTGCAGAGATGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTCAATGCTCTATCAGTGCTTCTTTGTTTCCTGCTGCAGAGATGGG  700

seq1  TTCTGCTTTCATTTAGAATGGTTTAAATGTGCTTTATTGCCTGTCTCCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTTTCATTTAGAATGGTTTAAATGTGCTTTATTGCCTGTCTCCAA  750

seq1  ACCAGGGTGGGGAGTCTTTGAAGAACCTTGAAGGCCAGCTGGCATATGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGGTGGGGAGTCTTTGAAGAACCTTGAAGGCCAGCTGGCATATGGA  800

seq1  AGGAGTTCAGTGATATTTCCTGACGGAATTAAATGATGCCATGCTTCTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTTCAGTGATATTTCCTGACGGAATTAAATGATGCCATGCTTCTTT  850

seq1  CCCCCGAGACTACAGGTCAGTGTTTTTAGATAGCAGGAAATAATGCAATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCGAGACTACAGGTCAGTGTTTTTAGATAGCAGGAAATAATGCAATT  900

seq1  CACGGAAAATGAATACCCAGCGAAGCTTAAAATCATGCCTCCTGTCTTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGAAAATGAATACCCAGCGAAGCTTAAAATCATGCCTCCTGTCTTTG  950

seq1  CTCAGAGACTCTCATCGTGAGATTCATGCTTGCTCTTCTCAGAGGCCCTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CTCAGAGACTCTCATCGTGAGATTCATGCTTGCTCTTCTCAGAGG-CCTA  999

seq1  TTTCAGGAAGCTCTGTGGGACAAGCTCTTGAGACTCTTCAGTATAGAGAA  1050
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTTCAGGAAGCTCTGTGGGAC-AGCTCTTGAGACTCTTCAGTATAGAGAA  1048

seq1  CCTTGACTTCTTTTTGTAGCTATCAG-ACAGCCCATGTGTTGCACAAATA  1099
      ||||||||   ||||||||||||||| |||||||||||||||||||||||
seq2  CCTTGACT--CTTTTGTAGCTATCAGAACAGCCCATGTGTTGCACAAATA  1096

seq1  CGAGACTCT-GATCTTAATAACATCTGACA  1128
      ||||||||| ||||||||||||||||||||
seq2  CGAGACTCTGGATCTTAATAACATCTGACA  1126

seq1: chr6_47458119_47459290
seq2: B6Ng01-210L24.g_65_1216 (reverse)

seq1  TCATGCTTTACTGGAATATTTGTGAATTTAATTTGTTGTTCACATACTAG  50
      ||||||||  |||    |||||||| |   | ||||||||||||||||||
seq2  TCATGCTTACCTG---AATTTGTGACT---ACTTGTTGTTCACATACTAG  44

seq1  TTCTTTAAAAGTGA--AGCAAGCCATTCATTGGTTTACTTTGATTGAATT  98
       ||||  |||||||  ||||      ||||  ||| || |||||||||||
seq2  -TCTT--AAAGTGAGCAGCA------TCAT--GTTAAC-TTGATTGAATT  82

seq1  TTCTACAGGCTGAAGCTCGTTTGCTTGAGGAACAGCGGAGAGTTCAGGTT  148
      ||||||||||||||||||| |||| ||| |||||||||||   |||||||
seq2  TTCTACAGGCTGAAGCTCG-TTGC-TGA-GAACAGCGGAGGAGTCAGGTT  129

seq1  TACCTCCACGAGAGCACACAAGATGAACTAGCACGGAAATGTGAGCAGGT  198
      ||||||||||||||||||| |||||||||||||||| |||||||||||||
seq2  TACCTCCACGAGAGCACAC-AGATGAACTAGCACGGGAATGTGAGCAGGT  178

seq1  CCTCATTGAAAAACACTTGGAAATTTTTCACACAGAGTTTCAGAATTTAT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATTGAAAAACACTTGGAAATTTTTCACACAGAGTTTCAGAATTTAT  228

seq1  TGGATGCTGACAAGAATGAAGGTGAATATAATTTGTTCCATACACTTCTG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGCTGACAAGAATGAAGGTGAATATAATTTGTTCCATACACTTCTG  278

seq1  TTGGTATTACCAATGGTGGGCAGATTGTTTTGTTTTTTATGTTTGAGTAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTATTACCAATGGTGGGCAGATTGTTTTGTTTTTTATGTTTGAGTAT  328

seq1  TCCTCCTTCTATCCTTTTAAAAGATGAAAAGATGTTTTTGTTTTGTTTTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTTCTATCCTTTTAAAAGATGAAAAGATGTTTTTGTTTTGTTTTT  378

seq1  AGTTCCCTTATTTGTTCCTCGGTGCTGGTGGGAGCTGTTAGTGATTCAGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCCTTATTTGTTCCTCGGTGCTGGTGGGAGCTGTTAGTGATTCAGT  428

seq1  CACATTGTTTTGGGATTTAGGACTTTCCATCTTTACCATAAATTGAAAAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTGTTTTGGGATTTAGGACTTTCCATCTTTACCATAAATTGAAAAC  478

seq1  ATATGAAATGAAAAATTTGAGGATTCCTTTTGTGACTTATAGTTGAAAGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAAATGAAAAATTTGAGGATTCCTTTTGTGACTTATAGTTGAAAGA  528

seq1  GGTATCTATATTAAGTTTATTTTTTAGGCAAATATTTTAGTACCTTTTGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATCTATATTAAGTTTATTTTTTAGGCAAATATTTTAGTACCTTTTGG  578

seq1  GGGCATAAATAGCTTATCAAGATTTTAGAAAGCATTCAGTGCTTTTCCTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATAAATAGCTTATCAAGATTTTAGAAAGCATTCAGTGCTTTTCCTC  628

seq1  AATGGTACATTAGCAGATTCTTGTGGTAAAGGGGAAATATAATTTTAATA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTACATTAGCAGATTCTTGTGGTAAAGGGGAAATATAATTTTAATA  678

seq1  ACCTGACCCCGTTGTTGATTTTAACAAAGTACACCAGATCTAGAAGATGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGACCCCGTTGTTGATTTTAACAAAGTACACCAGATCTAGAAGATGG  728

seq1  TTTCCTATTTCACAGTGTTTTTCACTTGATATAAGTACTTAATGAACAGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTATTTCACAGTGTTTTTCACTTGATATAAGTACTTAATGAACAGA  778

seq1  ATAAGTATGCACAGTTGGTTTCCATGCATACAATTGGTTCCTTTTTTTCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTATGCACAGTTGGTTTCCATGCATACAATTGGTTCCTTTTTTTCT  828

seq1  TTCAGATTTGGGCCGCATGTATAATCTTGTATCTAGAATTCAGGATGGCC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGATTTGGGCCGCATGTATAATCTTGTATCTAGAATTCAGGATGGCC  878

seq1  TAGGAGAATTGAAAAAACTACTAGAGACACATATTCATAATCAGGGTCTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGAATTGAAAAAACTACTAGAGACACATATTCATAATCAGGGTCTT  928

seq1  GCAGCAATTGAGAAGTGTGGAGAAGCTGCTCTAAATGTAAGTAGGACCTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAATTGAGAAGTGTGGAGAAGCTGCTCTAAATGTAAGTAGGACCTG  978

seq1  ACTGAAAAGCAATTGAGCCCATTATTTTCACATGCCAACTGCAGGTGTGT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAAAGCAATTGAGCCCATTATTTTCACATGCCAACTGCAGGTGTGT  1028

seq1  GTGGTGAATCTTTGTACAGTTTTACCGATACAGAGAACCTGTTTTGACTT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGAATCTTTGTACAGTTTTACCGATACAGAGAACCTGTTTTGACTT  1078

seq1  TTTTTTGTTTTTGTTTTTTTTTTGTTTTTTTCAAGACAGGGTTTCTCTGT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGTTTTTGTTTTTTTTTTGTTTTTTTCAAGACAGGGTTTCTCTGT  1128

seq1  ATAGCCCTGGCTGTCCTGGAATTC  1172
      ||||||||||||||||||||||||
seq2  ATAGCCCTGGCTGTCCTGGAATTC  1152