BAC Information

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BAC

Clone NameB6Ng01-211B12
Chromosome6 (Build37)
Map Location 84,643,821 - 84,751,935
singlet/doubletdoublet
Overlap geneExoc6b
Upstream geneVax2os2, Vax2os1, Vax2, Atp6v1b1, 1700124L16Rik, Ankrd53, Tex261, LOC665004, Nagk, Paip2b, LOC384450, LOC622683, LOC380687, LOC665098, LOC676366, Zfml, Dysf, LOC665114, 4930504D19Rik, Cyp26b1
Downstream geneLOC665129, Npm3-ps1, EG545861, EG623016, Spr, LOC665086, LOC665089, Emx1, Sfxn5, Rab11fip5, Noto, Smyd5, 1700040I03Rik, Cct7, Fbxo41, Egr4, Alms1, LOC100043497, EG665134, LOC100043493, Cml3, LOC623273
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-211B12.bB6Ng01-211B12.g
ACCGA029263GA029264
length1,1471,037
definitionB6Ng01-211B12.b B6Ng01-211B12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,750,778 - 84,751,935)(84,643,821 - 84,644,860)
sequence
gaattctttgtttagctctgtgccccattttttaataggattatttgatt
ttctggagtacagcttcttgagttctttgtatatattggatattagtccc
ctatcagatttaggattggtaaaaatcctttcccaatctgttagtggcct
ttttgtcttattgacggtgtcttttgccttacagaagctttgcaatttta
tgaggtcccatttgtagattcttgatcctacagcacaagccattcccctg
tgcccatatctttgaggttttcccccactttctcctcaataagttttagt
gtctctggttttatgtggagttccttgatccacttagacttgaactttgt
acaaggagataagaatagatcaattcgcattcttctatatgataactgcc
agttgtgtcagtaccatttgttgaaaatggggcagaatttcttaatatag
tacaatgccatacatacagtgtgaccatagcttaagaaattgtgttcagc
tgggcgtggtggtacacgcctttaatcccagcactcgggaggcaaaggca
ggtgaatgtctgagttcgaggccagcctggtctacagagtgagttccagg
acagccagagctagacagagaaaccctgtctcgaaaaccaaaaaaaaaaa
aaaaaaaaaagaaagaaagaaagaaagaaaaaaaagaaattgtgttcagt
gtaaagttcctggacacatggaaattaggtgcagtttcagttttttacaa
atatttctttataaataatgcactgtctgtagaaactgtgagtctggcct
actgactctatttgtcccatgactgctggaatttagaagagtgacttctg
gaaatgttgtttgcctcgctgtagcctcccggcaagtatgggccacatcg
tctgcccctgttgacttatttattgtttgttttttgagtgtcatgtaatc
caggctggcctgtatcttacaggtggctgagatttaaccttgactcctga
tcctcttgctcgacctcccgagttcagatcacagtggtgccacaccactg
ctgtctgtgtgtttcttggattgtctttcatctatatgtccatatagatg
tgatcttgacaaaatatgtttaaggtgtatagttacacttcaaatga
gaattcactgagaaatccaaaagagaaatatcaattgtcaatttgttccc
aaaggagctgggaggagagattgaataaaagagttccataaagtgcagtc
caaaagccctcattgtttactgcatggtaaatcataatggcaggagtggt
cttatcctgttacactggaaagtgagctagaagaagataaagtcacagcc
acagccactaactacagtaaacgaatactttatacatcctgcagaatgct
tagacaatgtacaggctcaaggcacccagccactcctgcgaagaaaacaa
aacaaaacaaacccctctccctttctcaggtcccgccacaggcatcacag
taaagcgttctgacagtcaaaatgccatgaagatcctgagagtagttggc
tagggataccacagagttggcagatcctgaattctgggcataagctattt
tatttcctttttctgaattaaagaatgggcctatccctgagtgtatataa
aaagaaagtgtaccaaacaaagaagaattgttgtgtttactcaactctgt
tttgtctgttgagccattctgcttactaaatgggacatcaacacagccac
ttctatacccaacaccaatgccatctgcatccttcttctttgactatgaa
cactttcccccacatttgctgacaggagcctgatatagctgtctcctgag
aggccctacaagtgcctgacaaatacagaaatggatgatcacagccttcc
attgaacagagcacagagtcccccaatgaagtacctagagaaaggaccca
aggagctgaaggggtttgcagccccataggaagaacaacaatatgaacta
accagtaccccctgagctccttgggactaaaccaccaaccaaagagcata
catggtgggactcatggctccagctgcataagtagcagaagatgggccta
gtcggtcatcaatggggaggagagcccttggttcccgtgagctctaagct
ccagtgtagggaatgcaggccagaagtggggagtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_84750778_84751935
seq2: B6Ng01-211B12.b_45_1191 (reverse)

seq1  TCATTTTAAAGTGTACTAATACACCTAAAACATATTTTGTCAAAGATTCA  50
      ||| ||| |||||||   |||||||| |||||||||||||| |||| |||
seq2  TCA-TTTGAAGTGTAACTATACACCTTAAACATATTTTGTC-AAGA-TCA  47

seq1  CATCTATATGGACATATAGATGAAAGACCAAAACCAAAGAAACACAACAG  100
      ||||||||||||||||||||||||||||   || | ||||||||| ||| 
seq2  CATCTATATGGACATATAGATGAAAGAC---AATCCAAGAAACAC-ACA-  92

seq1  GACAGCAGT-GTGTGGCACACCTGTGATCCTGGAACTCGGGAGGTCGAGG  149
      ||||||||| |||||||||  ||||||||   |||||||||||||||| |
seq2  GACAGCAGTGGTGTGGCACCACTGTGATC--TGAACTCGGGAGGTCGA-G  139

seq1  CAAGAGGATCAGGAGTTCAAGTTAAATCTCAGCCACCCTGTAAGATACAG  199
      ||||||||||||||||  | ||||||||||||||| ||||||||||||||
seq2  CAAGAGGATCAGGAGTCAAGGTTAAATCTCAGCCA-CCTGTAAGATACAG  188

seq1  GCCAGCCTGGATTACATGACACTCAAAAAACAAACAATAAATAAGTCAAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCCTGGATTACATGACACTCAAAAAACAAACAATAAATAAGTCAAC  238

seq1  AGGGGCAGACGATGTGGCCCATACTTGCCGGGAGGCTACAGCGAGGCAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCAGACGATGTGGCCCATACTTGCCGGGAGGCTACAGCGAGGCAAA  288

seq1  CAACATTTCCAGAAGTCACTCTTCTAAATTCCAGCAGTCATGGGACAAAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATTTCCAGAAGTCACTCTTCTAAATTCCAGCAGTCATGGGACAAAT  338

seq1  AGAGTCAGTAGGCCAGACTCACAGTTTCTACAGACAGTGCATTATTTATA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCAGTAGGCCAGACTCACAGTTTCTACAGACAGTGCATTATTTATA  388

seq1  AAGAAATATTTGTAAAAAACTGAAACTGCACCTAATTTCCATGTGTCCAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATATTTGTAAAAAACTGAAACTGCACCTAATTTCCATGTGTCCAG  438

seq1  GAACTTTACACTGAACACAATTTCTTTTTTTTCTTTCTTTCTTTCTTTCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTTACACTGAACACAATTTCTTTTTTTTCTTTCTTTCTTTCTTTCT  488

seq1  TTTTTTTTTTTTTTTTTTTTGGTTTTCGAGACAGGGTTTCTCTGTCTAGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTTTTTGGTTTTCGAGACAGGGTTTCTCTGTCTAGC  538

seq1  TCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAG  588

seq1  ACATTCACCTGCCTTTGCCTCCCGAGTGCTGGGATTAAAGGCGTGTACCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCACCTGCCTTTGCCTCCCGAGTGCTGGGATTAAAGGCGTGTACCA  638

seq1  CCACGCCCAGCTGAACACAATTTCTTAAGCTATGGTCACACTGTATGTAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGCCCAGCTGAACACAATTTCTTAAGCTATGGTCACACTGTATGTAT  688

seq1  GGCATTGTACTATATTAAGAAATTCTGCCCCATTTTCAACAAATGGTACT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTGTACTATATTAAGAAATTCTGCCCCATTTTCAACAAATGGTACT  738

seq1  GACACAACTGGCAGTTATCATATAGAAGAATGCGAATTGATCTATTCTTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAACTGGCAGTTATCATATAGAAGAATGCGAATTGATCTATTCTTA  788

seq1  TCTCCTTGTACAAAGTTCAAGTCTAAGTGGATCAAGGAACTCCACATAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTGTACAAAGTTCAAGTCTAAGTGGATCAAGGAACTCCACATAAA  838

seq1  ACCAGAGACACTAAAACTTATTGAGGAGAAAGTGGGGGAAAACCTCAAAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAGACACTAAAACTTATTGAGGAGAAAGTGGGGGAAAACCTCAAAG  888

seq1  ATATGGGCACAGGGGAATGGCTTGTGCTGTAGGATCAAGAATCTACAAAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGGCACAGGGGAATGGCTTGTGCTGTAGGATCAAGAATCTACAAAT  938

seq1  GGGACCTCATAAAATTGCAAAGCTTCTGTAAGGCAAAAGACACCGTCAAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACCTCATAAAATTGCAAAGCTTCTGTAAGGCAAAAGACACCGTCAAT  988

seq1  AAGACAAAAAGGCCACTAACAGATTGGGAAAGGATTTTTACCAATCCTAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAAAAAGGCCACTAACAGATTGGGAAAGGATTTTTACCAATCCTAA  1038

seq1  ATCTGATAGGGGACTAATATCCAATATATACAAAGAACTCAAGAAGCTGT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGATAGGGGACTAATATCCAATATATACAAAGAACTCAAGAAGCTGT  1088

seq1  ACTCCAGAAAATCAAATAATCCTATTAAAAAATGGGGCACAGAGCTAAAC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAGAAAATCAAATAATCCTATTAAAAAATGGGGCACAGAGCTAAAC  1138

seq1  AAAGAATTC  1158
      |||||||||
seq2  AAAGAATTC  1147

seq1: chr6_84643821_84644860
seq2: B6Ng01-211B12.g_65_1101

seq1  GAATTCACTGAGAAATCCAAAAGAGAAATATCAATTGTCAATTTGTTCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGAGAAATCCAAAAGAGAAATATCAATTGTCAATTTGTTCCC  50

seq1  AAAGGAGCTGGGAGGAGAGATTGAATAAAAGAGTTCCATAAAGTGCAGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAGCTGGGAGGAGAGATTGAATAAAAGAGTTCCATAAAGTGCAGTC  100

seq1  CAAAAGCCCTCATTGTTTACTGCATGGTAAATCATAATGGCAGGAGTGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGCCCTCATTGTTTACTGCATGGTAAATCATAATGGCAGGAGTGGT  150

seq1  CTTATCCTGTTACACTGGAAAGTGAGCTAGAAGAAGATAAAGTCACAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCCTGTTACACTGGAAAGTGAGCTAGAAGAAGATAAAGTCACAGCC  200

seq1  ACAGCCACTAACTACAGTAAACGAATACTTTATACATCCTGCAGAATGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCACTAACTACAGTAAACGAATACTTTATACATCCTGCAGAATGCT  250

seq1  TAGACAATGTACAGGCTCAAGGCACCCAGCCACTCCTGCGAAGAAAACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACAATGTACAGGCTCAAGGCACCCAGCCACTCCTGCGAAGAAAACAA  300

seq1  AACAAAACAAACCCCTCTCCCTTTCTCAGGTCCCGCCACAGGCATCACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAACAAACCCCTCTCCCTTTCTCAGGTCCCGCCACAGGCATCACAG  350

seq1  TAAAGCGTTCTGACAGTCAAAATGCCATGAAGATCCTGAGAGTAGTTGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCGTTCTGACAGTCAAAATGCCATGAAGATCCTGAGAGTAGTTGGC  400

seq1  TAGGGATACCACAGAGTTGGCAGATCCTGAATTCTGGGCATAAGCTATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGATACCACAGAGTTGGCAGATCCTGAATTCTGGGCATAAGCTATTT  450

seq1  TATTTCCTTTTTCTGAATTAAAGAATGGGCCTATCCCTGAGTGTATATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCCTTTTTCTGAATTAAAGAATGGGCCTATCCCTGAGTGTATATAA  500

seq1  AAAGAAAGTGTACCAAACAAAGAAGAATTGTTGTGTTTACTCAACTCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGTGTACCAAACAAAGAAGAATTGTTGTGTTTACTCAACTCTGT  550

seq1  TTTGTCTGTTGAGCCATTCTGCTTACTAAATGGGACATCAACACAGCCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTGTTGAGCCATTCTGCTTACTAAATGGGACATCAACACAGCCAC  600

seq1  TTCTATACCCAACACCAATGCCATCTGCATCCTTCTTCTTTGACTATGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATACCCAACACCAATGCCATCTGCATCCTTCTTCTTTGACTATGAA  650

seq1  CACTTTCCCCCACATTTGCTGACAGGAGCCTGATATAGCTGTCTCCTGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTCCCCCACATTTGCTGACAGGAGCCTGATATAGCTGTCTCCTGAG  700

seq1  AGGCCCTACAAGTGCCTGACAAATACAGAAATGGATGATCACAGCCTTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCTACAAGTGCCTGACAAATACAGAAATGGATGATCACAGCCTTCC  750

seq1  ATTGAACAGAGCACAGAGTCCCCCAATGAAGTACCTAGAGAAAGGACCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAACAGAGCACAGAGTCCCCCAATGAAGTACCTAGAGAAAGGACCCA  800

seq1  AGGAGCTGAAGGGGTTTGCAGCCCCATAGGAAGAACAACAATATGAACTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCTGAAGGGGTTTGCAGCCCCATAGGAAGAACAACAATATGAACTA  850

seq1  ACCAGTACCCCCTGAGCTCCTTGGGACTAAACCACCAACCAAAGAGCATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTACCCCCTGAGCTCCTTGGGACTAAACCACCAACCAAAGAGCATA  900

seq1  CATGGTGGGACTCATGGCTCCAGCTGCATAAGTAGCAGAAGAT-GGCCTA  949
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CATGGTGGGACTCATGGCTCCAGCTGCATAAGTAGCAGAAGATGGGCCTA  950

seq1  GTCGGTCATCAAT-GGGAGGAGAGGCCCTTGG-TCCCGTGAAGGCTCTAA  997
      ||||||||||||| ||||||||| |||||||| ||||||||  |||||||
seq2  GTCGGTCATCAATGGGGAGGAGA-GCCCTTGGTTCCCGTGA--GCTCTAA  997

seq1  GCTCCAGTGTAGGGGAATGCCAGGGCCAGGAAGT-GGGAGTGGG  1040
      ||||||||||| ||||||||   ||||| ||||| |||||||||
seq2  GCTCCAGTGTA-GGGAATGC--AGGCCA-GAAGTGGGGAGTGGG  1037