BAC Information

Click to search

BAC

Clone NameB6Ng01-211G17
Chromosome6 (Build37)
Map Location 23,708,104 - 23,709,032
singlet/doubletsinglet
Overlap geneCadps2
Upstream genePtprz1, Aass, EG668044, EG546894, EG668053, EG384356, Fezf1, Rnf133, Rnf148
Downstream geneTas2r118, LOC100041082, Slc13a1, LOC100041094, Iqub, Ndufa5, Asb15, EG626715, Lmod2, Wasl, 4932701A20Rik, Hyal4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-211G17.bB6Ng01-211G17.g
ACCGA029491GA029492
length1,237929
definitionB6Ng01-211G17.b B6Ng01-211G17.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagctctgagccccattttttaatggggttatttgatt
ttctggagtctaccttcttgagttctttatatatattggatattagtccc
ctatccgatttgggataggtaaagatcctttcccaatctgttggtggcct
ttttgtcttattgacggtgtcttttgcttagcagaagcttagcaatttta
tgaggtcccatttattgattcttgatcttacagcacaagccattgctgtt
ctattcaggaatttttcccctgtacccatatcttcaaggcttttccctac
tttctcctctaaaagtttcagtgtctctggttttatgtggagttccttaa
tccacttagatttgaccttagtacaaggagatagaaatggatcaattcgc
attcttctacatgataaccgccagttgtgccagcaccatttgttgaaaat
gctgtcttttttccactggatggttttagctcccttgtcaaagatcaagt
gaccataggtgtgtggatacatctctgggtcttcaattctgttccattgg
tctacttgtctgtcactataccagtaccatgcagttttgatcacaattgc
tctgtagtacagttttaggtccggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctcagttttttgttattccagatg
aatctgccgattgccctttctaattcgttgaagaattgagttaaattttg
atggggattgcattgaatctgtagattgcttttggcaagatggccatttt
tacaatgttgatcctgccaatccatgagcatgggagatctttccatcgtc
tgagatcttctttaatttctttctttagagacttgaagttcttatcatac
agatctttcacttccttagttagagtcacgccaaggtactttatattatt
tgtgactattgagaagggtgttgtttccctaatttctttttcagcctgtt
tttctttggtgtaaagaaagggccatttgacttggtttgaggtttatttt
atattccagcttaccttcacggaaagctggtttatcagcctagaaatttc
tctgggtgaatttttagggttcattataattccatacatactatctggca
agggaaatttggactcctcccttccaatggaatccttgaatcctattgtg
ggcaattgcttcgcgcagtacacttcacgaacatact
gaattcactttaaaacaaatttatctatgtgcctctgtggagaaatgcta
gttctggtgacttcttggtcctaaaatggagaagggccactctaaaggtc
acggtttatgcatcaactctagacttaaccaaatgaactagagttcagtt
cgttgttcttagtcatctgtgcaggggctgagaatatggactggtaacgc
tctcacttaaagcattgtctgaaccttggacaggttcattctgttcaagt
ctcattcaaaattgggcaaatgagccctccaggagacatccacgattcag
tgtttattttaataaggagtgtaccctgcctcccagattaatttgggaat
aaattatgtgttttagaattaatacttaagtatttccacttggttttatg
aaaagcatatatatgctctgataattgcttgttagctgcatattgcttgg
ttgcaaagcacttgttttcttaatgaagtcattaacaatattttaatgac
tggagtggctctgttttcttagcttggttttctatttaaaaggctagtga
ccctagtggcaagagctcccaagtcacaagcttgccatctagtggtgaga
agctactgtgatttatggtatgtgtcacattttcatacatgattctgata
gaaaccagcatagggaacgacaagatttgtgtcacaatggtagcaatatg
acattttctcaaatcctaaaataagattctataacatcagggcacccgtt
gcttgctccttgtgcaccaccaaagtgagagcctaaggaggattttgtct
cattgctccaactttgaaaatgatgtagtccttctgaatggccattagtt
gcccgcccatgagtgtccatatacatgagtgtatgtgtaactgtatataa
atatgtgtgtgtgtgtgtgtgaaagggcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_23708104_23709032
seq2: B6Ng01-211G17.g_69_997 (reverse)

seq1  CGCCCTTTCACACACACACACACACATATTTATATACAGTTACACATACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCTTTCACACACACACACACACATATTTATATACAGTTACACATACA  50

seq1  CTCATGTATATGGACACTCATGGGCGGGCAACTAATGGCCATTCAGAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGTATATGGACACTCATGGGCGGGCAACTAATGGCCATTCAGAAGG  100

seq1  ACTACATCATTTTCAAAGTTGGAGCAATGAGACAAAATCCTCCTTAGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACATCATTTTCAAAGTTGGAGCAATGAGACAAAATCCTCCTTAGGCT  150

seq1  CTCACTTTGGTGGTGCACAAGGAGCAAGCAACGGGTGCCCTGATGTTATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTTTGGTGGTGCACAAGGAGCAAGCAACGGGTGCCCTGATGTTATA  200

seq1  GAATCTTATTTTAGGATTTGAGAAAATGTCATATTGCTACCATTGTGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTTATTTTAGGATTTGAGAAAATGTCATATTGCTACCATTGTGACA  250

seq1  CAAATCTTGTCGTTCCCTATGCTGGTTTCTATCAGAATCATGTATGAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCTTGTCGTTCCCTATGCTGGTTTCTATCAGAATCATGTATGAAAA  300

seq1  TGTGACACATACCATAAATCACAGTAGCTTCTCACCACTAGATGGCAAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACACATACCATAAATCACAGTAGCTTCTCACCACTAGATGGCAAGC  350

seq1  TTGTGACTTGGGAGCTCTTGCCACTAGGGTCACTAGCCTTTTAAATAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGACTTGGGAGCTCTTGCCACTAGGGTCACTAGCCTTTTAAATAGAA  400

seq1  AACCAAGCTAAGAAAACAGAGCCACTCCAGTCATTAAAATATTGTTAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAGCTAAGAAAACAGAGCCACTCCAGTCATTAAAATATTGTTAATG  450

seq1  ACTTCATTAAGAAAACAAGTGCTTTGCAACCAAGCAATATGCAGCTAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCATTAAGAAAACAAGTGCTTTGCAACCAAGCAATATGCAGCTAACA  500

seq1  AGCAATTATCAGAGCATATATATGCTTTTCATAAAACCAAGTGGAAATAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATTATCAGAGCATATATATGCTTTTCATAAAACCAAGTGGAAATAC  550

seq1  TTAAGTATTAATTCTAAAACACATAATTTATTCCCAAATTAATCTGGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTATTAATTCTAAAACACATAATTTATTCCCAAATTAATCTGGGAG  600

seq1  GCAGGGTACACTCCTTATTAAAATAAACACTGAATCGTGGATGTCTCCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGTACACTCCTTATTAAAATAAACACTGAATCGTGGATGTCTCCTG  650

seq1  GAGGGCTCATTTGCCCAATTTTGAATGAGACTTGAACAGAATGAACCTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCTCATTTGCCCAATTTTGAATGAGACTTGAACAGAATGAACCTGT  700

seq1  CCAAGGTTCAGACAATGCTTTAAGTGAGAGCGTTACCAGTCCATATTCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGTTCAGACAATGCTTTAAGTGAGAGCGTTACCAGTCCATATTCTC  750

seq1  AGCCCCTGCACAGATGACTAAGAACAACGAACTGAACTCTAGTTCATTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCTGCACAGATGACTAAGAACAACGAACTGAACTCTAGTTCATTTG  800

seq1  GTTAAGTCTAGAGTTGATGCATAAACCGTGACCTTTAGAGTGGCCCTTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGTCTAGAGTTGATGCATAAACCGTGACCTTTAGAGTGGCCCTTCT  850

seq1  CCATTTTAGGACCAAGAAGTCACCAGAACTAGCATTTCTCCACAGAGGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTAGGACCAAGAAGTCACCAGAACTAGCATTTCTCCACAGAGGCA  900

seq1  CATAGATAAATTTGTTTTAAAGTGAATTC  929
      |||||||||||||||||||||||||||||
seq2  CATAGATAAATTTGTTTTAAAGTGAATTC  929