BAC Information

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BAC

Clone NameB6Ng01-212C02
Chromosome6 (Build37)
Map Location 57,270,946 - 57,271,676
singlet/doubletsinglet
Overlap genenone
Upstream genePde1c, EG666688, Lsm5, 5830411G16Rik, LOC100042288, Kbtbd2, Fkbp9, Nt5c3, LOC100042327, V1rc21, V1rc19, V1rc20, EG434016, V1rc32, V1rc30, V1rc1, V1rc3, EG626397, V1rc4, V1rc5, V1rc7, V1rc6, LOC100041445, V1r-ps6
Downstream geneV1rc29, V1rc16, V1rc26, V1rc27, EG434017, LOC666822, Ppm1k, Herc5, Pigy, Lancl2, AW146242, V1rc28, LOC626582, V1rc23, V1rc24, LOC100041514, V1rc18, V1rc8, V1rc17, EG633683, LOC626649, LOC626659, LOC626672, LOC666893, LOC100041571, V1rc33, LOC626724, V1rc25, V1rc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-212C02.bB6Ng01-212C02.g
ACCGA030007GA030008
length1,200894
definitionB6Ng01-212C02.b B6Ng01-212C02.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgagaaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcagttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaaccttgat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctaggcaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtactcactgataagtggatattagccccaaacc
tagtatacccaagatataagatataatttgctaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgcccctccttagaattgggaa
caaaacacccatggaaggggttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattccatacactagcaagattttattgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcatagggctccca
atggaggagctagagatagtagccaaggagctaaaggatctgcaacccta
tagtggaacaaaattatgaactaacagtacccggagctcttgactctagc
tgcatataatatccaaagatgctagtggcatcactgcaaagagaggtcat
ttgactgcaaccttatatgccagtacaggaacacaggtcatcgggaatgg
ctgccaagggaagtgtggttctatgtacgctatcaacgatctagctccat

gaattctgtggaaagggtggtagaaagactagaatagccagaatggatag
aaagcttcaaagaaacaaagccttataaatatatcaaaatggacatgcat
ataaactcagagactgtggcaacatgcacaggaactgtttggggtgtgcc
tgtgttgtcctagagtagaattgatatacatcccctccataatccaatag
ctatctccctttgaagccacttgcaaataaaaaattacttttcttcatag
tagtctcattggagaaacaaactactcttcagggtaggctctatgtcctg
cagtagatggacaacacaaaacagtcttaatggagtctttagtgatcctt
tgcctatatactatgacttctggttttgtatttttataagatctctgtgt
aagaacttgtgtgtttctgtgtctgtctgattgttgtgttttgctttggc
atgtttttcttctgtgtgttttgtcctattctaatttatttattttcttt
tttcttgttgtttattttactcatttcttagaagcctgcttattttctaa
agagagaaagaaatatcagtttgaatagtgaaggaagtgaagagtaactc
taaagaacagcagaaggagaaacactaaacagtttatagtgtatgaattt
tttttcaataaaaacaagagcacaattttaaatgggagggggtatggtgg
tgaatacttctaatcccataactggagaggtagaaactggaagagccatg
atattatgatcttcacccatatcatagacagagagatcctctataatgac
acaaggtgaatggagtgtgaggaacaacagccaaggttgtctcctggcct
ccatgtgcacatatacacacatcccttcaactgacacacataca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_57270946_57271676
seq2: B6Ng01-212C02.g_226_956

seq1  AGTAGAATTGATATACATCCCCTCCATAATCCAATAGCTATCTCCCTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAATTGATATACATCCCCTCCATAATCCAATAGCTATCTCCCTTTG  50

seq1  AAGCCACTTGCAAATAAAAAATTACTTTTCTTCATAGTAGTCTCATTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCACTTGCAAATAAAAAATTACTTTTCTTCATAGTAGTCTCATTGGA  100

seq1  GAAACAAACTACTCTTCAGGGTAGGCTCTATGTCCTGCAGTAGATGGACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAAACTACTCTTCAGGGTAGGCTCTATGTCCTGCAGTAGATGGACA  150

seq1  ACACAAAACAGTCTTAATGGAGTCTTTAGTGATCCTTTGCCTATATACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAAACAGTCTTAATGGAGTCTTTAGTGATCCTTTGCCTATATACTA  200

seq1  TGACTTCTGGTTTTGTATTTTTATAAGATCTCTGTGTAAGAACTTGTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTCTGGTTTTGTATTTTTATAAGATCTCTGTGTAAGAACTTGTGTG  250

seq1  TTTCTGTGTCTGTCTGATTGTTGTGTTTTGCTTTGGCATGTTTTTCTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTGTCTGTCTGATTGTTGTGTTTTGCTTTGGCATGTTTTTCTTCT  300

seq1  GTGTGTTTTGTCCTATTCTAATTTATTTATTTTCTTTTTTCTTGTTGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTTTTGTCCTATTCTAATTTATTTATTTTCTTTTTTCTTGTTGTTT  350

seq1  ATTTTACTCATTTCTTAGAAGCCTGCTTATTTTCTAAAGAGAGAAAGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTACTCATTTCTTAGAAGCCTGCTTATTTTCTAAAGAGAGAAAGAAA  400

seq1  TATCAGTTTGAATAGTGAAGGAAGTGAAGAGTAACTCTAAAGAACAGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGTTTGAATAGTGAAGGAAGTGAAGAGTAACTCTAAAGAACAGCAG  450

seq1  AAGGAGAAACACTAAACAGTTTATAGTGTATGAATTTTTTTTCAATAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGAAACACTAAACAGTTTATAGTGTATGAATTTTTTTTCAATAAAA  500

seq1  ACAAGAGCACAATTTTAAATGGGAGGGGGTATGGTGGTGAATACTTCTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAGCACAATTTTAAATGGGAGGGGGTATGGTGGTGAATACTTCTAA  550

seq1  TCCCATAACTGGAGAGGTAGAAACTGGAAGAGCCATGATATTATGATCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATAACTGGAGAGGTAGAAACTGGAAGAGCCATGATATTATGATCTT  600

seq1  CACCCATATCATAGACAGAGAGATCCTCTATAATGACACAAGGTGAATGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCATATCATAGACAGAGAGATCCTCTATAATGACACAAGGTGAATGG  650

seq1  AGTGTGAGGAACAACAGCCAAGGTTGTCTCCTGGCCTCCATGTGCACATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGAGGAACAACAGCCAAGGTTGTCTCCTGGCCTCCATGTGCACATA  700

seq1  TACACACAT-CCTTCAGCTGTACACACATACA  731
      ||||||||| |||||| ||| |||||||||||
seq2  TACACACATCCCTTCAACTG-ACACACATACA  731