BAC Information

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BAC

Clone NameB6Ng01-212M08
Chromosome6 (Build37)
Map Location 4,320,316 - 4,438,466
singlet/doubletdoublet
Overlap geneLOC100039965
Upstream geneSamd9l, AI987662, Ccdc132, Calcr, LOC100039942, Tfpi2, Gngt1, Gng11, 4930528H21Rik, Bet1, LOC667381
Downstream geneCol1a2, Casd1, Sgce, Peg10, LOC100040018, Ppp1r9a, Pon1, Pon3, Pon2, Asb4, Pdk4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-212M08.bB6Ng01-212M08.g
ACCGA030482GA030483
length1,0931,178
definitionB6Ng01-212M08.b B6Ng01-212M08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,437,373 - 4,438,466)(4,320,316 - 4,321,494)
sequence
gaattctttccctatgacacatctgtcttctcaatttaatagaaactaca
gttcttgggatttttcttgccatgaatttgaaggagatcagaaaagagaa
acttctcttactctcccctcttcccccgattttacaaggaactatttgca
aggctactttgtaaaagaagaattaagaacacagaaaaaaagagacagac
ttgatccctcccaccagatggatattcagaaagaacccatcatttatcat
ggggagaagtccattagtgttgatcggctgtgtttaactgactctgtgtg
gagctttgctttaaagtgcttgtgtgaatataatgatcagcgtcctgttg
ctccaattctgtgagttaagtggtaacttctgcagctaggttattaatct
gtcggcaaattactaaaaccctgggaagaacggagacaagagaaggggaa
tatccccatttattaggagtaatgttttctcagcctacatacgtagagtg
aggagcagaaagatcatttgtgaatttatcagtgactttggaaagtcaag
gggaaaagctttgcaaattcaaactcagttgttctcaactggaagtctag
ggaagaggtcacttagcggttgaactaaagatggtagccacatttgagga
ctctggttcatggtcattttcttggaattggttctgagggccccaatttc
tagaaataaaaccccctaacaaggcagaactctgcatggttatttataat
caaggtggtaagaggatttcaggggtaggctcagtgagctgtgttttaat
gtcatccagtggattctgattctaagtgatgcttatggaactctgggtta
ataaccccattgctcattgctgccaccacctaccccatctgaaagtaact
cactcgttgtattagcttgctagggctgctctaaccaaggatcataaacc
tagtggcttaaacaacacacacacacacgtggtctcacccttgtagagtt
gggagtttagttccaggtgtttcattcttcctgagcagagttctaggagc
caggatggagcctgggcgtccgagtcgaactcagactccctgt
gaattctctctgtcagaaaaggcttttgggtggctaggctttgcaatata
tcttggggagctattcccactagctggaaatgcttgcaattggttctgtt
ctaccttcatcagtttatccttgctttcttcattcttatttacaacccat
atacccaaaacacactgtgcactctgcatccttctaaccagcaaggactc
cttgtaaggtggtaatttttcccttccaggaccttctcatttcaccttca
ggtcaaagccacctgtccccatttctaagaatctttcatggaacttgata
tctaatcttcgcattaaggtttttttttcttttttaactaaagcattaga
gggaaaaaactttaaatattagttttcaaaatttttatttcatcacctta
atccaaaacagtgactctctagctatgatggaggaggagatcctgtgagt
tagactcacaggtttggctcctcggttcgtgtctttcagttaatatttca
tttttgactgatttcactctcacacttcataaaattacaaggctttagag
ctggaaagggtttagagataagtcgatgctctcattttaaagattaagaa
ccaggagcacataagatgtcagagaagaggcacagcaaaagagaagccag
aactcctgactccaagtcaagcacttgttccgtatctcacagatactctg
aaaatgaactttccagaaaaatatagtttcaaactaattctcttctgttg
ttgttgtcctcctccttctcttccttctctctcctccttctcttccccct
ccttcctctttcccctctcctcctcctcctgctcttccttcttctccttc
ttctatctggtatttccagtcagatggagtagatgagattggagagaata
tttcttcaacgtctataaataatatctttggcttgaaagaaaaataacag
tgctaaactattgttgcatctcaaactagggaaattaaagttttatttat
ttgtatgacattaaactacaagtatatgtgaattataattgcaggtaaca
attttatcttggctttcagtattctcaaggtgggaaaatgtaaggagtag
cagctcaggaaaacctagaaaggccatgctctaagtttacctcaattaga
tgaagaatgtttggcttatttgttcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_4437373_4438466
seq2: B6Ng01-212M08.b_48_1140 (reverse)

seq1  ACAGGGAGTTCCTGAG-TCGACTCGACCGCCCAGCCTCCACCCTGGCTCC  49
      |||||||||  ||||| ||||||||  ||||||| ||||| |||||||||
seq2  ACAGGGAGT--CTGAGTTCGACTCGGACGCCCAGGCTCCATCCTGGCTCC  48

seq1  TAGAACTCTGCTCAGGAAG-ATG-AACACCTGGAACTTAAACTCCCAACC  97
      ||||||||||||||||||| ||| |||||||||||| ||||||||||| |
seq2  TAGAACTCTGCTCAGGAAGAATGAAACACCTGGAAC-TAAACTCCCAA-C  96

seq1  TCTACAAGGGTGAGACCACGTGTGTGTGTGTGTTGTTTAAGCCACTAGGT  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAAGGGTGAGACCACGTGTGTGTGTGTGTTGTTTAAGCCACTAGGT  146

seq1  TTATGATCCTTGGTTAGAGCAGCCCTAGCAAGCTAATACAACGAGTGAGT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGATCCTTGGTTAGAGCAGCCCTAGCAAGCTAATACAACGAGTGAGT  196

seq1  TACTTTCAGATGGGGTAGGTGGTGGCAGCAATGAGCAATGGGGTTATTAA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTCAGATGGGGTAGGTGGTGGCAGCAATGAGCAATGGGGTTATTAA  246

seq1  CCCAGAGTTCCATAAGCATCACTTAGAATCAGAATCCACTGGATGACATT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAGTTCCATAAGCATCACTTAGAATCAGAATCCACTGGATGACATT  296

seq1  AAAACACAGCTCACTGAGCCTACCCCTGAAATCCTCTTACCACCTTGATT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACACAGCTCACTGAGCCTACCCCTGAAATCCTCTTACCACCTTGATT  346

seq1  ATAAATAACCATGCAGAGTTCTGCCTTGTTAGGGGGTTTTATTTCTAGAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAACCATGCAGAGTTCTGCCTTGTTAGGGGGTTTTATTTCTAGAA  396

seq1  ATTGGGGCCCTCAGAACCAATTCCAAGAAAATGACCATGAACCAGAGTCC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGGCCCTCAGAACCAATTCCAAGAAAATGACCATGAACCAGAGTCC  446

seq1  TCAAATGTGGCTACCATCTTTAGTTCAACCGCTAAGTGACCTCTTCCCTA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATGTGGCTACCATCTTTAGTTCAACCGCTAAGTGACCTCTTCCCTA  496

seq1  GACTTCCAGTTGAGAACAACTGAGTTTGAATTTGCAAAGCTTTTCCCCTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCCAGTTGAGAACAACTGAGTTTGAATTTGCAAAGCTTTTCCCCTT  546

seq1  GACTTTCCAAAGTCACTGATAAATTCACAAATGATCTTTCTGCTCCTCAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTCCAAAGTCACTGATAAATTCACAAATGATCTTTCTGCTCCTCAC  596

seq1  TCTACGTATGTAGGCTGAGAAAACATTACTCCTAATAAATGGGGATATTC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACGTATGTAGGCTGAGAAAACATTACTCCTAATAAATGGGGATATTC  646

seq1  CCCTTCTCTTGTCTCCGTTCTTCCCAGGGTTTTAGTAATTTGCCGACAGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCTCTTGTCTCCGTTCTTCCCAGGGTTTTAGTAATTTGCCGACAGA  696

seq1  TTAATAACCTAGCTGCAGAAGTTACCACTTAACTCACAGAATTGGAGCAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAACCTAGCTGCAGAAGTTACCACTTAACTCACAGAATTGGAGCAA  746

seq1  CAGGACGCTGATCATTATATTCACACAAGCACTTTAAAGCAAAGCTCCAC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACGCTGATCATTATATTCACACAAGCACTTTAAAGCAAAGCTCCAC  796

seq1  ACAGAGTCAGTTAAACACAGCCGATCAACACTAATGGACTTCTCCCCATG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGTCAGTTAAACACAGCCGATCAACACTAATGGACTTCTCCCCATG  846

seq1  ATAAATGATGGGTTCTTTCTGAATATCCATCTGGTGGGAGGGATCAAGTC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGATGGGTTCTTTCTGAATATCCATCTGGTGGGAGGGATCAAGTC  896

seq1  TGTCTCTTTTTTTCTGTGTTCTTAATTCTTCTTTTACAAAGTAGCCTTGC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTTTTTTTCTGTGTTCTTAATTCTTCTTTTACAAAGTAGCCTTGC  946

seq1  AAATAGTTCCTTGTAAAATCGGGGGAAGAGGGGAGAGTAAGAGAAGTTTC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGTTCCTTGTAAAATCGGGGGAAGAGGGGAGAGTAAGAGAAGTTTC  996

seq1  TCTTTTCTGATCTCCTTCAAATTCATGGCAAGAAAAATCCCAAGAACTGT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCTGATCTCCTTCAAATTCATGGCAAGAAAAATCCCAAGAACTGT  1046

seq1  AGTTTCTATTAAATTGAGAAGACAGATGTGTCATAGGGAAAGAATTC  1094
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTATTAAATTGAGAAGACAGATGTGTCATAGGGAAAGAATTC  1093

seq1: chr6_4320316_4321494
seq2: B6Ng01-212M08.g_66_1243

seq1  GAATTCTCTCTGTCAGAAAAGGCTTTTGGGTGGCTAGGCTTTGCAATATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCTGTCAGAAAAGGCTTTTGGGTGGCTAGGCTTTGCAATATA  50

seq1  TCTTGGGGAGCTATTCCCACTAGCTGGAAATGCTTGCAATTGGTTCTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGGGAGCTATTCCCACTAGCTGGAAATGCTTGCAATTGGTTCTGTT  100

seq1  CTACCTTCATCAGTTTATCCTTGCTTTCTTCATTCTTATTTACAACCCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTTCATCAGTTTATCCTTGCTTTCTTCATTCTTATTTACAACCCAT  150

seq1  ATACCCAAAACACACTGTGCACTCTGCATCCTTCTAACCAGCAAGGACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCAAAACACACTGTGCACTCTGCATCCTTCTAACCAGCAAGGACTC  200

seq1  CTTGTAAGGTGGTAATTTTTCCCTTCCAGGACCTTCTCATTTCACCTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTAAGGTGGTAATTTTTCCCTTCCAGGACCTTCTCATTTCACCTTCA  250

seq1  GGTCAAAGCCACCTGTCCCCATTTCTAAGAATCTTTCATGGAACTTGATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAAAGCCACCTGTCCCCATTTCTAAGAATCTTTCATGGAACTTGATA  300

seq1  TCTAATCTTCGCATTAAGGTTTTTTTTTCTTTTTTAACTAAAGCATTAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATCTTCGCATTAAGGTTTTTTTTTCTTTTTTAACTAAAGCATTAGA  350

seq1  GGGAAAAAACTTTAAATATTAGTTTTCAAAATTTTTATTTCATCACCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAAAACTTTAAATATTAGTTTTCAAAATTTTTATTTCATCACCTTA  400

seq1  ATCCAAAACAGTGACTCTCTAGCTATGATGGAGGAGGAGATCCTGTGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAAACAGTGACTCTCTAGCTATGATGGAGGAGGAGATCCTGTGAGT  450

seq1  TAGACTCACAGGTTTGGCTCCTCGGTTCGTGTCTTTCAGTTAATATTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTCACAGGTTTGGCTCCTCGGTTCGTGTCTTTCAGTTAATATTTCA  500

seq1  TTTTTGACTGATTTCACTCTCACACTTCATAAAATTACAAGGCTTTAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGACTGATTTCACTCTCACACTTCATAAAATTACAAGGCTTTAGAG  550

seq1  CTGGAAAGGGTTTAGAGATAAGTCGATGCTCTCATTTTAAAGATTAAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAAGGGTTTAGAGATAAGTCGATGCTCTCATTTTAAAGATTAAGAA  600

seq1  CCAGGAGCACATAAGATGTCAGAGAAGAGGCACAGCAAAAGAGAAGCCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAGCACATAAGATGTCAGAGAAGAGGCACAGCAAAAGAGAAGCCAG  650

seq1  AACTCCTGACTCCAAGTCAAGCACTTGTTCCGTATCTCACAGATACTCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCTGACTCCAAGTCAAGCACTTGTTCCGTATCTCACAGATACTCTG  700

seq1  AAAATGAACTTTCCAGAAAAATATAGTTTCAAACTAATTCTCTTCTGTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAACTTTCCAGAAAAATATAGTTTCAAACTAATTCTCTTCTGTTG  750

seq1  TTGTTGTCCTCCTCCTTCTCTTCCTTCTCTCTCCTCCTTCTCTTCCCCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTCCTCCTCCTTCTCTTCCTTCTCTCTCCTCCTTCTCTTCCCCCT  800

seq1  CCTTCCTCTTTCCCCTCTCCTCCTCCTCCTGCTCTTCCTTCTTCTCCTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTCTTTCCCCTCTCCTCCTCCTCCTGCTCTTCCTTCTTCTCCTTC  850

seq1  TTCTATCTGGTATTTCCAGTCAGATGGAGTAGATGAGATTGGAGAGAATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATCTGGTATTTCCAGTCAGATGGAGTAGATGAGATTGGAGAGAATA  900

seq1  TTTC-TCAACGTCTATAAATAATATCTTTGGCTTGAAAGAAAAATAACAG  949
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCAACGTCTATAAATAATATCTTTGGCTTGAAAGAAAAATAACAG  950

seq1  TGCTAAACTAT--GTGCATCTCAAACTAGGGAAATTAAAAGTCTA-TTAT  996
      |||||||||||   |||||||||||||||||||||||||  | || ||||
seq2  TGCTAAACTATTGTTGCATCTCAAACTAGGGAAATTAAAGTTTTATTTAT  1000

seq1  TTGTATGACA-TAAACTACAAGTAATAATGTGAAATATAATTGCAGGTAA  1045
      |||||||||| |||||||||||||   ||||||| |||||||||||||||
seq2  TTGTATGACATTAAACTACAAGTA--TATGTGAATTATAATTGCAGGTAA  1048

seq1  CAATTTTATCCTTGGCTTTTCAGTAATTCTCAAAGTTGGAAAATGGTAGA  1095
      ||||||||| |||||| ||||||| |||||||| || ||||||| ||| |
seq2  CAATTTTAT-CTTGGC-TTTCAGT-ATTCTCAAGGTGGGAAAAT-GTA-A  1093

seq1  GGAAGTAGGCAGC-CAGGAAAACCTAGAAAAGCCATGCTCTAAGTTTACC  1144
      || |||| ||||| |||||||||||||||| |||||||||||||||||||
seq2  GG-AGTA-GCAGCTCAGGAAAACCTAGAAAGGCCATGCTCTAAGTTTACC  1141

seq1  TCAAATAGATG-AGGATGTTTGG-TTATTTGTTCTTT  1179
      |||| |||||| || |||||||| |||||||||||||
seq2  TCAATTAGATGAAGAATGTTTGGCTTATTTGTTCTTT  1178