BAC Information

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BAC

Clone NameB6Ng01-213J17
Chromosome6 (Build37)
Map Location 46,358,948 - 46,360,075
singlet/doubletsinglet
Overlap geneCntnap2
Upstream genenone
Downstream geneRbpsuh-rs3, LOC622745, LOC100041064, LOC100041078
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-213J17.bB6Ng01-213J17.g
ACCGA031080GA031081
length1,1971,116
definitionB6Ng01-213J17.b B6Ng01-213J17.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctctgtaccccattttttaatttttatttgagtcc
agcttcttgagctctttatatatattgggtattagtcccctttcagattt
aggattggtaaaaatccttttccaatctgttggtgtcctttttgtcttat
tgacagtgtcttttgtctaacagaagctttgcaattttatgaggtcccat
ttgtcaattcttgatcttacagcacaagtcattgctgttctgtttaggaa
tttttcccctgtgcccatatctttgaggctttttcccactttcttctcta
ttaatttcagtgtctctggttttatgtggcattccttgatccacttacac
ttgagctttttacaaggagataagaatggatcaatttgaattcttctaca
tgataactggcagttttgccagcaccatttgctgaaaatgctgtcttttt
tccactggatggttttagctcccttgtctaagatcaagtgacaataggtg
tgtggattcatttcttggtcttcgattctattctattgatctacctgtct
gtcattgtaccagtaccatgcagtttttatcacaattgttctgtagacaa
gcttagtatcagacatggtgattcattccaccagaggttctttttttgtt
gagaatagtttttgctatcctatgtttttttattatttcagatgaattta
caaatttcccttcctatctcagtgaagaattgagttggaatgttgttggg
aattgcattgaatctatagattgctttcagaaggatagccattttgatta
tattaatcctgctaatccatgagcatgggagatctttccatcttctgaga
ttttcttcaatttctttctttagacatttgaagttcttatcattcagatc
ttttacttccttagttagagtctcaccaaggtattttatattatttgtga
ctattgtgaagggtgctgttccctaatttcttctcagtgcatttatcctt
tgtgtagagaaaggcattgatttgttgagtatttatatccagctatgcac
tgaactgttatcagtttaggagtttctggtgattttggggtcactaatta
ttacttatcttatattgccaaataggaataatgactactcttccattgaa
tccttgacgtcttgtgtcgaatggctctctggcagagaaaccatcag

gaattcatttaaaattaacaaaaatgtatttaatttaatttaaaggaaaa
cctatttctgattagaaactgctaatttcaaatgctaattttagccattc
tgaatcaagttgtgtggataactcaaataataaaaattataacaatattt
gatttctaattaatggctttaaagtattctactataatgtatccagttta
gtgaatgatgtgacacaattaatttaaatatcaaataaacccttctgaat
tcagtggaaaaaataaataattaaaatctgtgaacactggaacaagctgt
ttcctacagtagagagggctgagtctattctttgtctttgttctataatt
tccttggtctgtagctcagggtcatttgacagtttttcctgtagaatctc
ttgattgaagagtaggtgtttcagtgggcaatattcaagtttctcattga
ctgagtacccaagatttagtagttcatacagtgtttcaactggccctact
tgaagaatcttttatttgtttctattgtgccttatctattacctaacctt
cagtataatgattaagttatgattcatctaccttgaacttaaagaggtct
tatgcatactgtcatggcctctgtgagttcatatgtgtaattgaaatgtt
ataatctaaaatattgctttcttgtagttaactatgaatattaggtgtgg
gagagttagttttctttagaggtagatcaaaatactctggtaaatggtca
gcctcccaatatcgtataggcagcactaactatcctcatccagttttaaa
gtacaatgccaatacaaggttgagtgtgaatggcatgggagtgaggtgta
tccaggaagaattgggggagaaagctgaaaataatcaaattatagtacat
gaaattcttaaagaattaatagaatatgtacaaaaagatttgggctggtg
actttagaatttttccagaaagttaaatacggttttatacagtattcatt
agtagagaatatttacatgggttaaattcagaaatctggagaaaaggcat
tttgtcttgctcatagattataatcctcatgtgacatatttccagcacct
gagttattatgactat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_46358948_46360075
seq2: B6Ng01-213J17.g_63_1178 (reverse)

seq1  ATAGTCATAATAACATCAGGTGCTTGAAATAAGGGCAACATGAGGGATTA  50
      |||||||||||||| ||||||||| ||||||   |  |||||| ||||||
seq2  ATAGTCATAATAAC-TCAGGTGCTGGAAATA--TGTCACATGA-GGATTA  46

seq1  TAAATCTATGAGCAAGACAAAATTGCCTTTCTTCCAGATTTCTGAATTTT  100
      | |||||||||||||||||||| |||||||  |||||||||||||| |||
seq2  T-AATCTATGAGCAAGACAAAA-TGCCTTTTCTCCAGATTTCTGAA-TTT  93

seq1  AACCCATTGGTAAATATTCTCTACTAAATGGATTACTTGTATTAAAACCG  150
      |||||||  ||||||||||||||||||   || ||| |||| ||||||||
seq2  AACCCAT--GTAAATATTCTCTACTAA--TGAATAC-TGTA-TAAAACCG  137

seq1  TATTTAACTTTCTGGAAAAATTCTAAAGTCACCAG-CCAAATCTTTTTGT  199
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TATTTAACTTTCTGGAAAAATTCTAAAGTCACCAGCCCAAATCTTTTTGT  187

seq1  ACATATTCTATTAATTCTTTAAGAATTTCATGTACTATAATTTGATTATT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATTCTATTAATTCTTTAAGAATTTCATGTACTATAATTTGATTATT  237

seq1  TTCAGCTTTCTCCCCCAATTCTTCCTGGATACACCTCACTCCCATGCCAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCTTTCTCCCCCAATTCTTCCTGGATACACCTCACTCCCATGCCAT  287

seq1  TCACACTCAACCTTGTATTGGCATTGTACTTTAAAACTGGATGAGGATAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACTCAACCTTGTATTGGCATTGTACTTTAAAACTGGATGAGGATAG  337

seq1  TTAGTGCTGCCTATACGATATTGGGAGGCTGACCATTTACCAGAGTATTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGCTGCCTATACGATATTGGGAGGCTGACCATTTACCAGAGTATTT  387

seq1  TGATCTACCTCTAAAGAAAACTAACTCTCCCACACCTAATATTCATAGTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTACCTCTAAAGAAAACTAACTCTCCCACACCTAATATTCATAGTT  437

seq1  AACTACAAGAAAGCAATATTTTAGATTATAACATTTCAATTACACATATG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACAAGAAAGCAATATTTTAGATTATAACATTTCAATTACACATATG  487

seq1  AACTCACAGAGGCCATGACAGTATGCATAAGACCTCTTTAAGTTCAAGGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCACAGAGGCCATGACAGTATGCATAAGACCTCTTTAAGTTCAAGGT  537

seq1  AGATGAATCATAACTTAATCATTATACTGAAGGTTAGGTAATAGATAAGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAATCATAACTTAATCATTATACTGAAGGTTAGGTAATAGATAAGG  587

seq1  CACAATAGAAACAAATAAAAGATTCTTCAAGTAGGGCCAGTTGAAACACT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATAGAAACAAATAAAAGATTCTTCAAGTAGGGCCAGTTGAAACACT  637

seq1  GTATGAACTACTAAATCTTGGGTACTCAGTCAATGAGAAACTTGAATATT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAACTACTAAATCTTGGGTACTCAGTCAATGAGAAACTTGAATATT  687

seq1  GCCCACTGAAACACCTACTCTTCAATCAAGAGATTCTACAGGAAAAACTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACTGAAACACCTACTCTTCAATCAAGAGATTCTACAGGAAAAACTG  737

seq1  TCAAATGACCCTGAGCTACAGACCAAGGAAATTATAGAACAAAGACAAAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATGACCCTGAGCTACAGACCAAGGAAATTATAGAACAAAGACAAAG  787

seq1  AATAGACTCAGCCCTCTCTACTGTAGGAAACAGCTTGTTCCAGTGTTCAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGACTCAGCCCTCTCTACTGTAGGAAACAGCTTGTTCCAGTGTTCAC  837

seq1  AGATTTTAATTATTTATTTTTTCCACTGAATTCAGAAGGGTTTATTTGAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTAATTATTTATTTTTTCCACTGAATTCAGAAGGGTTTATTTGAT  887

seq1  ATTTAAATTAATTGTGTCACATCATTCACTAAACTGGATACATTATAGTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAATTAATTGTGTCACATCATTCACTAAACTGGATACATTATAGTA  937

seq1  GAATACTTTAAAGCCATTAATTAGAAATCAAATATTGTTATAATTTTTAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACTTTAAAGCCATTAATTAGAAATCAAATATTGTTATAATTTTTAT  987

seq1  TATTTGAGTTATCCACACAACTTGATTCAGAATGGCTAAAATTAGCATTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGAGTTATCCACACAACTTGATTCAGAATGGCTAAAATTAGCATTT  1037

seq1  GAAATTAGCAGTTTCTAATCAGAAATAGGTTTTCCTTTAAATTAAATTAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTAGCAGTTTCTAATCAGAAATAGGTTTTCCTTTAAATTAAATTAA  1087

seq1  ATACATTTTTGTTAATTTTAAATGAATTC  1128
      |||||||||||||||||||||||||||||
seq2  ATACATTTTTGTTAATTTTAAATGAATTC  1116


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