BAC Information

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BAC

Clone NameB6Ng01-213J18
Chromosome6 (Build37)
Map Location 124,653,142 - 124,844,489
singlet/doubletdoublet
Overlap geneMboat5, Emg1, Phb2, Ptpn6, Grcc10, Atn1, Eno2, Lrrc23, Spsb2, Tpi1, Usp5, Cdca3, Gnb3, Leprel2, Gpr162, Cd4
Upstream geneEG435916, EG243628, EG545874, LOC384484, LOC623282, V2r1b, EG384486, Vmn2r-ps34, Vmn2r27, LOC623374, EG622297, Cd163, LOC100043530, 1700013D24Rik, 1700027F06Rik, 1700060L04Rik, Pex5, Clstn3, C1rl, C1r, C1s, LOC667277, EG317677
Downstream geneLag3, Ptms, Mlf2, EG667343, Cops7a, C530028O21Rik, Zfp384, Ing4, Acrbp, Gpr92, Chd4, Nol1, A930037G23Rik, Gapdh, Ncapd2, Mrpl51, Vamp1, Tapbpl, Cd27, 4930417O13Rik, Tuba3a, Ltbr, Scnn1a, Tnfrsf1a, Plekhg6, Cd9, Vwf, Tmem16b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-213J18.bB6Ng01-213J18.g
ACCGA031082GA031083
length803735
definitionB6Ng01-213J18.b B6Ng01-213J18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(124,843,687 - 124,844,489)(124,653,142 - 124,653,873)
sequence
gaattccaggctagcccgctctacagagcaagacactgataaaataaaac
aaaacactatcctggccagagtctgcaacagcccttgtccctatgaccca
gggtcacaactcatccacccaacacagaggaggtacctgtcttagtcagg
tttctattcctgcacaaacatcatgaccacaaacaaattggggaggaaag
gatttattcagcttacacttccgcattgctgttcatcaccaaaggaagtc
aggactgaaactcaagcagatcaggaagcaggagctgatgcagaggcctt
ggaggggtgtttcttactggcttgcctcccctggcttgctcagcttgctc
tcttatagaacccatgactaccagccacaatgagcccttccccttcttga
tcaccaactgagaaaatgccccacagctggatctcatagaggcacttccc
cagctgaagctcctttctctgtgataactgcagctcgtgtcaagttgaca
cacaaaaccagccagtacagtatctattgaaacttggacttgattctaag
aaaatagctcctaatcctggagaaagcctcttcctgtgaagatgagaccc
tgagaaaagtttagttctagcaccagggtgacagcttaggccatgaagag
cttacctcacccatacaaggacatgagttcagtcaccagacctgaggtcc
tagctgtacacagtgtcttggaggtatactctgttcttcttttgtttgct
ccaaaaagcctgcctattcttgctgaatatcttcgtgtgtgtgtgtgaat
ata
gaattcctcattgttatcgtggaaaagcaggtaggactcgagggtgggag
gaaaacggatagggaggaagacggggaccgtgacctctctctttccaccc
caggtcagcagtctaattcgggacagccctgccctgagcagcctggcctc
catcactgccctacagcccttctactacttggtgcaacagaccatccact
ggctgttcatgggttactctatgactgccttctgcctcttcacatgggac
aaatggcttaaggtagtgaagacctgtaaggctgaggggggtgggggtgt
cactaaaacctcaagtagcaagggacaacccacacctcacatctatttca
gtggtttctgtctccccgcaggtgtacagatccatctatttccttggaca
tgtcttcttcttgagcctactattcatattgccttatatccacaaagcaa
tggtgccaagaaaagaaaagttaaaaaagagggaatgatctctgtctttc
cctggtaagtaaagtctgcaggctacaggcaggctagaaccagactagaa
atgccactggaaactgaggtggacttcagtgcagcttgtccccaaggggg
acactgtaggttctgccttgctagaagggcctggggtcactctggcagcc
ttctgagcacacgccttgcccctgcaggtggccgagagctggactggtgc
agaaaactactttgtctcccttctcacagcactcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_124843687_124844489
seq2: B6Ng01-213J18.b_43_845 (reverse)

seq1  TATATTCACACACACACACGAAGATATTCAGCAAGAATAGGCAGGCTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTCACACACACACACGAAGATATTCAGCAAGAATAGGCAGGCTTTT  50

seq1  TGGAGCAAACAAAAGAAGAACAGAGTATACCTCCAAGACACTGTGTACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCAAACAAAAGAAGAACAGAGTATACCTCCAAGACACTGTGTACAG  100

seq1  CTAGGACCTCAGGTCTGGTGACTGAACTCATGTCCTTGTATGGGTGAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGACCTCAGGTCTGGTGACTGAACTCATGTCCTTGTATGGGTGAGGT  150

seq1  AAGCTCTTCATGGCCTAAGCTGTCACCCTGGTGCTAGAACTAAACTTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCTTCATGGCCTAAGCTGTCACCCTGGTGCTAGAACTAAACTTTTC  200

seq1  TCAGGGTCTCATCTTCACAGGAAGAGGCTTTCTCCAGGATTAGGAGCTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGTCTCATCTTCACAGGAAGAGGCTTTCTCCAGGATTAGGAGCTAT  250

seq1  TTTCTTAGAATCAAGTCCAAGTTTCAATAGATACTGTACTGGCTGGTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTAGAATCAAGTCCAAGTTTCAATAGATACTGTACTGGCTGGTTTT  300

seq1  GTGTGTCAACTTGACACGAGCTGCAGTTATCACAGAGAAAGGAGCTTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTCAACTTGACACGAGCTGCAGTTATCACAGAGAAAGGAGCTTCAG  350

seq1  CTGGGGAAGTGCCTCTATGAGATCCAGCTGTGGGGCATTTTCTCAGTTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGAAGTGCCTCTATGAGATCCAGCTGTGGGGCATTTTCTCAGTTGG  400

seq1  TGATCAAGAAGGGGAAGGGCTCATTGTGGCTGGTAGTCATGGGTTCTATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCAAGAAGGGGAAGGGCTCATTGTGGCTGGTAGTCATGGGTTCTATA  450

seq1  AGAGAGCAAGCTGAGCAAGCCAGGGGAGGCAAGCCAGTAAGAAACACCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGCAAGCTGAGCAAGCCAGGGGAGGCAAGCCAGTAAGAAACACCCC  500

seq1  TCCAAGGCCTCTGCATCAGCTCCTGCTTCCTGATCTGCTTGAGTTTCAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGGCCTCTGCATCAGCTCCTGCTTCCTGATCTGCTTGAGTTTCAGT  550

seq1  CCTGACTTCCTTTGGTGATGAACAGCAATGCGGAAGTGTAAGCTGAATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACTTCCTTTGGTGATGAACAGCAATGCGGAAGTGTAAGCTGAATAA  600

seq1  ATCCTTTCCTCCCCAATTTGTTTGTGGTCATGATGTTTGTGCAGGAATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTTCCTCCCCAATTTGTTTGTGGTCATGATGTTTGTGCAGGAATAG  650

seq1  AAACCTGACTAAGACAGGTACCTCCTCTGTGTTGGGTGGATGAGTTGTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTGACTAAGACAGGTACCTCCTCTGTGTTGGGTGGATGAGTTGTGA  700

seq1  CCCTGGGTCATAGGGACAAGGGCTGTTGCAGACTCTGGCCAGGATAGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGGTCATAGGGACAAGGGCTGTTGCAGACTCTGGCCAGGATAGTGT  750

seq1  TTTGTTTTATTTTATCAGTGTCTTGCTCTGTAGAGCGGGCTAGCCTGGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTATTTTATCAGTGTCTTGCTCTGTAGAGCGGGCTAGCCTGGAA  800

seq1  TTC  803
      |||
seq2  TTC  803

seq1: chr6_124653142_124653873
seq2: B6Ng01-213J18.g_65_799

seq1  GAATTCCTCATTGTTATCGTGGAAAAGCAGGTAGGACTCGAGGGTGGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCATTGTTATCGTGGAAAAGCAGGTAGGACTCGAGGGTGGGAG  50

seq1  GAAAACGGATAGGGAGGAAGACGGGGACCGTGACCTCTCTCTTTCCACCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACGGATAGGGAGGAAGACGGGGACCGTGACCTCTCTCTTTCCACCC  100

seq1  CAGGTCAGCAGTCTAATTCGGGACAGCCCTGCCCTGAGCAGCCTGGCCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCAGCAGTCTAATTCGGGACAGCCCTGCCCTGAGCAGCCTGGCCTC  150

seq1  CATCACTGCCCTACAGCCCTTCTACTACTTGGTGCAACAGACCATCCACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACTGCCCTACAGCCCTTCTACTACTTGGTGCAACAGACCATCCACT  200

seq1  GGCTGTTCATGGGTTACTCTATGACTGCCTTCTGCCTCTTCACATGGGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTTCATGGGTTACTCTATGACTGCCTTCTGCCTCTTCACATGGGAC  250

seq1  AAATGGCTTAAGGTAGTGAAGACCTGTAAGGCTGAGGGGGGTGGGGGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGCTTAAGGTAGTGAAGACCTGTAAGGCTGAGGGGGGTGGGGGTGT  300

seq1  CACTAAAACCTCAAGTAGCAAGGGACAACCCACACCTCACATCTATTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAAAACCTCAAGTAGCAAGGGACAACCCACACCTCACATCTATTTCA  350

seq1  GTGGTTTCTGTCTCCCCGCAGGTGTACAGATCCATCTATTTCCTTGGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTTCTGTCTCCCCGCAGGTGTACAGATCCATCTATTTCCTTGGACA  400

seq1  TGTCTTCTTCTTGAGCCTACTATTCATATTGCCTTATATCCACAAAGCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCTTCTTGAGCCTACTATTCATATTGCCTTATATCCACAAAGCAA  450

seq1  TGGTGCCAAGAAAAGAAAAGTTAAAAAAGAGGGAATGATCTCTGTCTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCCAAGAAAAGAAAAGTTAAAAAAGAGGGAATGATCTCTGTCTTTC  500

seq1  CCTGGTAAGTAAAGTCTGCAGGCTACAGGCAGGCTAGAACCAGACTAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTAAGTAAAGTCTGCAGGCTACAGGCAGGCTAGAACCAGACTAGAA  550

seq1  ATGCCACTGGAAACTGAGGTGGACTTCAGTGCAGCTTGTCCCCAAGGGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCACTGGAAACTGAGGTGGACTTCAGTGCAGCTTGTCCCCAAGGGGG  600

seq1  ACACTGTAGGTTCTGCCTTGCTAGAAGGGCCTGGGGTCACTCTGGCAGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGTAGGTTCTGCCTTGCTAGAAGGGCCTGGGGTCACTCTGGCAGCC  650

seq1  TTCTGAGCACACGCCTTG-CCCTGCAGGTGGCCGAGAGCTGGACTGGTGC  699
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTCTGAGCACACGCCTTGCCCCTGCAGGTGGCCGAGAGCTGGACTGGTGC  700

seq1  AG-AAACTAC-TTGTCTCCCTTCTCACAGCACTCC  732
      || ||||||| ||||||||||||||||||||||||
seq2  AGAAAACTACTTTGTCTCCCTTCTCACAGCACTCC  735