BAC Information

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BAC

Clone NameB6Ng01-213P12
Chromosome9 (Build37)6 (Build37)
Map Location 19,185,641 - 19,185,72035,386,175 - 35,386,730
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneNaalad2, B020006M18Rik, Map1lc3-ps, Mbd3l2, Zfp558, Mbd3l1, Muc16, Olfr24, Olfr828, Olfr829, Olfr830, Olfr831-ps1, Olfr832, GA_x5J8B7W6RL5-13870817-13871726, Olfr834, Olfr835, Olfr836, Olfr837, GA_x5J8B7W6RL5-13695863-13696754, Olfr839-ps1, GA_x5J8B7W6RL5-13645512-13646298, Olfr841-ps1, Olfr842-ps1, Olfr843, Olfr845, Olfr1522-ps1, Olfr846, LOC665697, Olfr847
Downstream geneGA_x5J8B7W6RL5-13451244-13452122, Olfr849, Olfr850, Olfr851, Olfr852-ps1, Olfr853, Olfr854, Olfr855, Zfp75, EG624341, LOC665751, Olfr857, Olfr858-ps1, Olfr58, Olfr859, Olfr860, GA_x5J8B7W6RL5-13004417-13003354, Olfr862, Olfr77, EG665823, Olfr863-ps1, Olfr864-ps1, Olfr865-ps1, Olfr866, Olfr867, Olfr868, Olfr869, Olfr870, Olfr871, Olfr872, Olfr39, Olfr873, Olfr18, Zfp560
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-213P12.bB6Ng01-213P12.g
ACCGA031345GA031346
length5021,034
definitionB6Ng01-213P12.b B6Ng01-213P12.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(19,185,641 - 19,185,720)(35,386,175 - 35,386,730)
sequence
gaattcaagcgtattccccccactttctcttctcaggttcagtgcatagt
atcaggttcagtgtagagtatatctggttttatgctgcgatcttcgatcc
atttaagcttgaattttgtgcgaagtgatacataagaatttattttcatt
cttgtacatgcagacatagtaaaaccattatgtatttctggcttctttat
aaacatacagtttctgtaggtgtgtggatttatacatggcactacaatta
gattccattgattagcctgtttgtttcgatgccaataccctgttggtttt
attactatagctctgtagtacaacttgaaatcagggatggtgagacctcc
agtaactttattacttgggatagttgagtattttgcttttccatatgaaa
ttgaaaattgacctttcaaggtctataaagaattgtgttagaattttgat
gggaattgcattgaatctgtagattgttggtaggagccatttttactatg
tt
gaattcctgatctttccaaaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gtgtttgtttatataatggattacattgatagattttcgtatattaaacc
atccctgcatccctggaataaaccctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattgaggatttttgc
atcgatattcatgagagaaattggtctgaagttctctatctttgttgggt
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtaccttctacttctattttgtgaaatagtttgtgcagaactgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccatctg
gtcctgggctttttttggttgggagactattaataactgcttctatttct
ttaggtgatatgggactttttagatgatcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgatttttgttaa
ttaggattttgtccctatgccctttagtgagtctagctaagggtttatct
atcttgttgattttctcaaagaaccaactcctcgtttggttaattcttga
atagttcttcttgtttccacttggttgatttcacccctgagtttgattat
tttctgccgtctactccttcttgggtgaatttgcttcctttttttctagg
gctttagatgtgttgtcaagctgctagtatgtgctgtctcccgtttctct
tgaaggcactcagaagctatgagtttcccctcttagaaatgctttcattg
tgtcccataaggcttggtacgttgtggcttcatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_19185641_19185720
seq2: B6Ng01-213P12.b_471_545

seq1  AAGAATTGAGTTGGAATTTTGATGGGGATTGCATTGAATCTGTAGATTGC  50
      |||||||| ||| ||||||||||||| |||||||||||||||||||||| 
seq2  AAGAATTGTGTTAGAATTTTGATGGGAATTGCATTGAATCTGTAGATTG-  49

seq1  TTTTGGCAAGATAGCCATTTTTACAATGTT  80
        |||| | |  |||||||||||| |||||
seq2  --TTGGTAGG--AGCCATTTTTACTATGTT  75

seq1: chr6_35386175_35386730
seq2: B6Ng01-213P12.g_545_1101 (reverse)

seq1  AATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTCT  50
      ||||||||||||||||||| |  | |||||||||||||||||||||||||
seq2  AATGAAGCCACAACGTACCAAGCCTTATGGGACACAATGAAAGCATTTCT  50

seq1  AAGA-GGGAAACTCATAGC-GCTGAGTGCCTCCAAGAAGAAACGGGAGAC  98
      |||| ||||||||||||||  |||||||||| |||| |||||||||||||
seq2  AAGAGGGGAAACTCATAGCTTCTGAGTGCCTTCAAG-AGAAACGGGAGAC  99

seq1  AGCACATACTAGCAGCTTGACAACACATCTAAAAGCCCTAGAAAAAAAGG  148
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AGCACATACTAGCAGCTTGACAACACATCT-AAAGCCCTAGAAAAAAAGG  148

seq1  AAGCAAATTCACCCAAG-AGGAGTAGACGGCAGGAAATAATCAAACTCAG  197
      ||||||||||||||||| ||||||||||||||| ||||||||||||||||
seq2  AAGCAAATTCACCCAAGAAGGAGTAGACGGCAGAAAATAATCAAACTCAG  198

seq1  GGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACC  247
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTC-AAGAATTAACC  247

seq1  AAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTA  297

seq1  GCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAAC-AAAATCA  346
      |||||||||||||||||||| ||||||||||||||||||||| |||||||
seq2  GCTAGACTCACTAAAGGGCATAGGGACAAAATCCTAATTAACAAAAATCA  347

seq1  GAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACC  397

seq1  ATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGA  447

seq1  CGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGG  497

seq1  ATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGAAATAGAAGCA  546
      |||||||||| |||||||| ||||||||||||||||||||||||||||||
seq2  ATCAAGTTGATCATCTAAAAAGTCCCATATCACCTAAAGAAATAGAAGCA  547

seq1  GTTATTAATA  556
      ||||||||||
seq2  GTTATTAATA  557