BAC Information

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BAC

Clone NameB6Ng01-214E06
Chromosome6 (Build37)
Map Location 98,403,998 - 98,580,827
singlet/doubletdoublet
Overlap geneLOC665963
Upstream geneFrmd4b, LOC641241, LOC100043692, Mitf, Gm765, LOC666019
Downstream geneLOC665979, Foxp1, Eif4e3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-214E06.bB6Ng01-214E06.g
ACCGA031560GA031561
length1,098423
definitionB6Ng01-214E06.b B6Ng01-214E06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,579,734 - 98,580,827)(98,403,998 - 98,404,423)
sequence
gaattcaactgtaaacctttttaggtgtgtgtgttttatagagctcctga
aacacatgccatctaaaaatcacaatagcagaatttttctgaaacttacc
gctgaatgggaaaagtcacttatatgggaaaaatttgtcttgcgtctgtg
aaagcaaaattacaacagctgccaaaacatgaaaacttcatcatcgtggg
gcagaatgttgagaggaacgccaaggaatttatcgttattcaacatttca
ggtaacattctcctgtcgtctcttctgggaggagatttttttttcttttt
tgctcctcactctggagaggcgcgtccacgtttgctgagagacacgcagg
aaataatataatgaaaggttcatatcatgtttgactctgctcagcgagtg
agcaggcaggcaaccctgtaaccttcagatccctgctctgcgctgcaact
cacagaaggacaggttggctggaaaagatgggcgtggctttcatcttcac
caaccatgcaaagcatctgccagccttctccgtcctttgggctgaggagg
ctttgacacccggaagtgaaaccaggcaattgaaataaaaatgctttcta
aaatttaggatgattacccttattattcgttcctggtgagccttttagtt
tgttaatggcatacgtttcatgtcatttccactttcctagttaaaccact
gccattcctcaggcgtcccatgtcagaccatgctatatccacttgagaat
gtcggaccatgctattcacttgagaatgtttgccttgtcaagaaagaatg
ggaatgcctgagttgtctgatgcaatactattcattttactctctagcac
attggccttattttagtttgggtttcctcagacgtggacaccaagtcagg
gactcagtgggagtgttgtactctagagctagacccaggaaacagggtag
ggagggggccgtatgaaggaggaaaggaagagaagcagacagcaaggatg
tggctcctagccattaccacttgggtgtgtatttcctactggggacgttc
tagaattaagtagcatactgagccctggaggtactcttaccaaggaga

actggtgtctggtgagatgtctaagaagcaagcacccatgttccagaaga
aatggcactattttttgcctgcataagtttcactcacaaaactgactaga
taaggctgaaagaagctgagaggaagggcgatcctgtaagagaaccagca
gtctcaattaatctggatccccgaggtctctcaaacactggaccaaacag
acagcatatgccagctgatatgaggctcccaacacacatacagtagaggg
cttccaggtctgggttcaatcagagatgatgcacctaaccctcaagagac
tggaggtcccagggaggttagagatcaggtgtgtgtgtgtggggggggga
acagccacatggagacaagaaggtggggaggaggtttgagatgtagaaca
gttggacagtgtatgttgggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_98579734_98580827
seq2: B6Ng01-214E06.b_47_1144 (reverse)

seq1  TCTCC-TGGT-AGAGTAACTCCAGGCCTCAGTATGCTAC-TAATTCTAGG  47
      ||||| |||| |||||| ||||||| ||||||||||||| ||||||||| 
seq2  TCTCCTTGGTAAGAGTACCTCCAGGGCTCAGTATGCTACTTAATTCTAGA  50

seq1  ACGTCCCCAGTA-GAAATACACACCCCAGTGGTAATGGCTA-GAGCCACA  95
      |||||||||||| ||||||||||||| |||||||||||||| ||||||||
seq2  ACGTCCCCAGTAGGAAATACACACCCAAGTGGTAATGGCTAGGAGCCACA  100

seq1  TCCTTTGCTGTCTGCTTCCTCTTCCTTTCCTCCTTCATACGGCCCCCTCC  145
      ||| ||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TCC-TTGCTGTCTGCTT-CTCTTCCTTTCCTCCTTCATACGGCCCCCTCC  148

seq1  CTACCCTGTTTCCTGGGTCTAGCTCTAGAGTACAACACTCCCACTGAGTC  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCTGTTTCCTGGGTCTAGCTCTAGAGTACAACACTCCCACTGAGTC  198

seq1  CCTGACTTGGTGTCCACGTCTGAGG-AACCCAAACTAAAATAAGGCCAAT  244
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CCTGACTTGGTGTCCACGTCTGAGGAAACCCAAACTAAAATAAGGCCAAT  248

seq1  GTGCTAGAGAGTAAAATGAATAGTATTGCATCAGACAACTCAGGCATTCC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTAGAGAGTAAAATGAATAGTATTGCATCAGACAACTCAGGCATTCC  298

seq1  CATTCTTTCTTGACAAGGCAAACATTCTCAAGTGAATAGCATGGTCCGAC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTTCTTGACAAGGCAAACATTCTCAAGTGAATAGCATGGTCCGAC  348

seq1  ATTCTCAAGTGGATATAGCATGGTCTGACATGGGACGCCTGAGGAATGGC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCAAGTGGATATAGCATGGTCTGACATGGGACGCCTGAGGAATGGC  398

seq1  AGTGGTTTAACTAGGAAAGTGGAAATGACATGAAACGTATGCCATTAACA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTTTAACTAGGAAAGTGGAAATGACATGAAACGTATGCCATTAACA  448

seq1  AACTAAAAGGCTCACCAGGAACGAATAATAAGGGTAATCATCCTAAATTT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAAAGGCTCACCAGGAACGAATAATAAGGGTAATCATCCTAAATTT  498

seq1  TAGAAAGCATTTTTATTTCAATTGCCTGGTTTCACTTCCGGGTGTCAAAG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAGCATTTTTATTTCAATTGCCTGGTTTCACTTCCGGGTGTCAAAG  548

seq1  CCTCCTCAGCCCAAAGGACGGAGAAGGCTGGCAGATGCTTTGCATGGTTG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCAGCCCAAAGGACGGAGAAGGCTGGCAGATGCTTTGCATGGTTG  598

seq1  GTGAAGATGAAAGCCACGCCCATCTTTTCCAGCCAACCTGTCCTTCTGTG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGATGAAAGCCACGCCCATCTTTTCCAGCCAACCTGTCCTTCTGTG  648

seq1  AGTTGCAGCGCAGAGCAGGGATCTGAAGGTTACAGGGTTGCCTGCCTGCT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCAGCGCAGAGCAGGGATCTGAAGGTTACAGGGTTGCCTGCCTGCT  698

seq1  CACTCGCTGAGCAGAGTCAAACATGATATGAACCTTTCATTATATTATTT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCGCTGAGCAGAGTCAAACATGATATGAACCTTTCATTATATTATTT  748

seq1  CCTGCGTGTCTCTCAGCAAACGTGGACGCGCCTCTCCAGAGTGAGGAGCA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCGTGTCTCTCAGCAAACGTGGACGCGCCTCTCCAGAGTGAGGAGCA  798

seq1  AAAAAGAAAAAAAAATCTCCTCCCAGAAGAGACGACAGGAGAATGTTACC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAAAAAAAAATCTCCTCCCAGAAGAGACGACAGGAGAATGTTACC  848

seq1  TGAAATGTTGAATAACGATAAATTCCTTGGCGTTCCTCTCAACATTCTGC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGTTGAATAACGATAAATTCCTTGGCGTTCCTCTCAACATTCTGC  898

seq1  CCCACGATGATGAAGTTTTCATGTTTTGGCAGCTGTTGTAATTTTGCTTT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACGATGATGAAGTTTTCATGTTTTGGCAGCTGTTGTAATTTTGCTTT  948

seq1  CACAGACGCAAGACAAATTTTTCCCATATAAGTGACTTTTCCCATTCAGC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGACGCAAGACAAATTTTTCCCATATAAGTGACTTTTCCCATTCAGC  998

seq1  GGTAAGTTTCAGAAAAATTCTGCTATTGTGATTTTTAGATGGCATGTGTT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGTTTCAGAAAAATTCTGCTATTGTGATTTTTAGATGGCATGTGTT  1048

seq1  TCAGGAGCTCTATAAAACACACACACCTAAAAAGGTTTACAGTTGAATTC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAGCTCTATAAAACACACACACCTAAAAAGGTTTACAGTTGAATTC  1098


seq1: chr6_98403998_98404423
seq2: B6Ng01-214E06.g_66_494

seq1  GAATTCACTGGTGTCTGGTGAGATGTCTAAGAAGCAAGCACCCATGTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGGTGTCTGGTGAGATGTCTAAGAAGCAAGCACCCATGTTCC  50

seq1  AGAAGAAATGGCACTATTTTTTGCCTGCATAAGTTTCACTCACAAAACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAATGGCACTATTTTTTGCCTGCATAAGTTTCACTCACAAAACTG  100

seq1  ACTAGATAAGGCTGAAAGAAGCTGAGAGGAAGGGCGATCCTGTAAGAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGATAAGGCTGAAAGAAGCTGAGAGGAAGGGCGATCCTGTAAGAGAA  150

seq1  CCAGCAGTCTCAATTAATCTGGATCCCCGAGGTCTCTCAAACACTGGACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAGTCTCAATTAATCTGGATCCCCGAGGTCTCTCAAACACTGGACC  200

seq1  AAACAGACAGCATATGCCAGCTGATATGAGGCTCCCAACACACATACAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGACAGCATATGCCAGCTGATATGAGGCTCCCAACACACATACAGT  250

seq1  AGAGGGCTTCCAGGTCTGGGTTCAATCAGAGATGATGCACCTAACCCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGCTTCCAGGTCTGGGTTCAATCAGAGATGATGCACCTAACCCTCA  300

seq1  AGAGACTGGAGGTCCCAGGGAGGTTAGAGATCAGGTGTGTGTGTGTGGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACTGGAGGTCCCAGGGAGGTTAGAGATCAGGTGTGTGTGTGTGGGG  350

seq1  GGGGGAACAGCCACATGGAGACAAGAAGGTGGGGAGGAGGTATGAGATGT  400
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GGGGGAACAGCCACATGGAGACAAGAAGGTGGGGAGGAGGTTTGAGATGT  400

seq1  AGAACAGTTGGAGAGTG---GATGGGGGG  426
      |||||||||||| ||||   | |||||||
seq2  AGAACAGTTGGACAGTGTATGTTGGGGGG  429


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