BAC Information

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BAC

Clone NameB6Ng01-214H07
Chromosome6 (Build37)
Map Location 8,653,082 - 8,765,739
singlet/doubletdoublet
Overlap geneIca1
Upstream geneEG667529, C1galt1, LOC100040661, Col28a1, BC020002, Rpa3, LOC100036521, LOC667028, A430035B10Rik, Glcci1
Downstream geneLOC100040238, Nxph1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-214H07.bB6Ng01-214H07.g
ACCGA031699GA031700
length1,2161,191
definitionB6Ng01-214H07.b B6Ng01-214H07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,653,082 - 8,654,285)(8,764,548 - 8,765,739)
sequence
gaattctccttaaaaagggacggggtttcgttttctccctctcttgcttc
ttgctctcttgctccttgcactctggctcctgaagatgtaagcaataaag
ctttgccgcagaagattctggtctgttgcgtctttcctggccggtcgtga
gaacgcgtctaataacagcttcaaaaataaagttaaatagaacatctagg
agtaaaccaaaacaaaaaagcgaaagccttctatgatgaaaagtttaaag
ccatcaaagaatacactgaagaagacagtagaagatcaaaagactttcca
tgcttatgattggtacaactaattttgtaaagttagctacattactaaaa
ggaatttacagacttaatgtaatccctaccaaaagttcagtggcattatt
tataggtatgagaaatcaattatttaaaaaaagcaaattgaaaataaata
ataataatactgacactcctatgaggacacaataccctataaaagctata
tctataaatagaaagcaatgccaaagttattgtaatatctcatttcaaat
tatatcacagagccacagtaacaagattagcacggcgctgccacaaaacc
agacacataaacttttatagtttgaacataaattcctcttataggctcat
gtatttgaacacttggcccctaactatttggacaattgtagaacctctga
gactgtgtcctggttaagagataagagttgctgaggcaagactagaagat
gaggaccacttccggctccgggctaagctctctgctcctttatcagccaa
gctagagaagtagcacctgcaggctggtgccactcggaccaagaaacccc
agctgctttgcattctctgccatgatggaatatactctaccctgtgacct
gtgaaccaaaataaaactctcttaagttgcttccatcaattatgttgcca
tggtgatgaggaaaggaagggatacagaacattgaaagattggcactctt
actgtgacctctggaactgggttgagaatgtagaaaatatttggagatgc
aagtttaggtaagctttagagcactggtgatcagtgctgaatgacaattc
tggtgtgatattccaaaaatgcttaaaggaattcagactaagtcagctgc
ctcaatgagcttccaacaagaaccagccaatggagttcaggccagaaata
tatatctctctcacct

gaattcagtaactacacgtaagtggacacagaaaagcaaagcaaatgtgg
aatatgtgtgaaaaggcacaaaatgtagtgcaaatagcaaggatagagtt
tttcctcaagggatctcaaagataacaaaaagcccctcagatgaccatgg
aaaaccatttcgatcacactgggatgtctgcattccacttattagtttga
agttgtagcaaatacagggataaaaggacaattacaagtttaatgtattg
aggaatgaattttagtgaaatcttataaacagaataagtctcatttaact
gagaatgctccttccaattgagaaagagatcccaacaccagcctctgaac
tccacatgcacccacacaggcaagcgatcctgcacacacatacatataca
tcaatcaaataaattcatgattttaattcattaaatttttaagagagtta
ttctccagaaagtcattgataataaaaaatttacaaaaaatcagaaaaat
tgggagaattaaaaattaaaaagagcaagacaaaaatcaatttatgaagg
aaattcagcaaaataaataccaataacagaatagcatggcaatgtggcag
ggggagtgagtttcagtcacaaaaagacaaaattgaaaaaaggaatcatt
aggaagttttctgacacaacatggactgacagaagttgaattggcattta
tttcccaggacatacacagcacaacctgtacctaagagctgtttgcttcg
atctgacatttctaccatgttgtttcctagtgaaagctaagtctgaagaa
tgtcagcttatgatttgtaaattgtgcttatactaagtcacatatggaag
agcagaggtcaagaaaaatagaataacttgtttagaaaacatgtctctct
ccattaaagtgcctcatgtcgttccagctcctctgagacatgaataaaat
gtcagttcatcaaggaggatacagagagatgttatcgtcttctcaaagaa
attccttttcctatgataggagaaagaacaagcaaacagcaaaaggctct
ccaacctcataacaacttttaacttcaaaatacaaggagaagaagattca
tttttctcctaagcaaataatttcacatcagcctcttccaagaattgtta
atcgtcggtcactgcaatgacaatctctcaatttattatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_8653082_8654285
seq2: B6Ng01-214H07.b_47_1262

seq1  GAATTCTCCTTAAAAAGGGACGGGGTTTCGTTTTCTCCCTCTCTTGCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTTAAAAAGGGACGGGGTTTCGTTTTCTCCCTCTCTTGCTTC  50

seq1  TTGCTCTCTTGCTCCTTGCACTCTGGCTCCTGAAGATGTAAGCAATAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCTCTTGCTCCTTGCACTCTGGCTCCTGAAGATGTAAGCAATAAAG  100

seq1  CTTTGCCGCAGAAGATTCTGGTCTGTTGCGTCTTTCCTGGCCGGTCGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCCGCAGAAGATTCTGGTCTGTTGCGTCTTTCCTGGCCGGTCGTGA  150

seq1  GAACGCGTCTAATAACAGCTTCAAAAATAAAGTTAAATAGAACATCTAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACGCGTCTAATAACAGCTTCAAAAATAAAGTTAAATAGAACATCTAGG  200

seq1  AGTAAACCAAAACAAAAAAGCGAAAGCCTTCTATGATGAAAAGTTTAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAACCAAAACAAAAAAGCGAAAGCCTTCTATGATGAAAAGTTTAAAG  250

seq1  CCATCAAAGAATACACTGAAGAAGACAGTAGAAGATCAAAAGACTTTCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAAAGAATACACTGAAGAAGACAGTAGAAGATCAAAAGACTTTCCA  300

seq1  TGCTTATGATTGGTACAACTAATTTTGTAAAGTTAGCTACATTACTAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTATGATTGGTACAACTAATTTTGTAAAGTTAGCTACATTACTAAAA  350

seq1  GGAATTTACAGACTTAATGTAATCCCTACCAAAAGTTCAGTGGCATTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTTACAGACTTAATGTAATCCCTACCAAAAGTTCAGTGGCATTATT  400

seq1  TATAGGTATGAGAAATCAATTATTTAAAAAAAGCAAATTGAAAATAAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGTATGAGAAATCAATTATTTAAAAAAAGCAAATTGAAAATAAATA  450

seq1  ATAATAATACTGACACTCCTATGAGGACACAATACCCTATAAAAGCTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAATACTGACACTCCTATGAGGACACAATACCCTATAAAAGCTATA  500

seq1  TCTATAAATAGAAAGCAATGCCAAAGTTATTGTAATATCTCATTTCAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAAATAGAAAGCAATGCCAAAGTTATTGTAATATCTCATTTCAAAT  550

seq1  TATATCACAGAGCCACAGTAACAAGATTAGCACGGCGCTGCCACAAAACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCACAGAGCCACAGTAACAAGATTAGCACGGCGCTGCCACAAAACC  600

seq1  AGACACATAAACTTTTATAGTTTGAACATAAATTCCTCTTATAGGCTCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACATAAACTTTTATAGTTTGAACATAAATTCCTCTTATAGGCTCAT  650

seq1  GTATTTGAACACTTGGCCCCTAACTATTTGGACAATTGTAGAACCTCTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTGAACACTTGGCCCCTAACTATTTGGACAATTGTAGAACCTCTGA  700

seq1  GACTGTGTCCTGGTTAAGAGATAAGAGTTGCTGAGGCAAGACTAGAAGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTGTCCTGGTTAAGAGATAAGAGTTGCTGAGGCAAGACTAGAAGAT  750

seq1  GAGGACCACTTCCGGCTCCGGGCTAAGCTCTCTGCTCCTTTATCAGCCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACCACTTCCGGCTCCGGGCTAAGCTCTCTGCTCCTTTATCAGCCAA  800

seq1  GCTAGAGAAGTAGCACCTGCAGGCTGGTGCCACTCGGACCAAGAAACCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGAGAAGTAGCACCTGCAGGCTGGTGCCACTCGGACCAAGAAACCCC  850

seq1  AGCTGCTTTGCATTCTCTGCCATGATGGAATATACTCTACCCTGTGACCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCTTTGCATTCTCTGCCATGATGGAATATACTCTACCCTGTGACCT  900

seq1  GTGAACCAAAATAAAACTCTCTTAAGTTGCTTCCATCAATTATGTTGCCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACCAAAATAAAACTCTCTTAAGTTGCTTCCATCAATTATGTTGCCA  950

seq1  TGGTGATGAGGAAAGGAAGGGATACAGAACATTGAAAGATTGGCACTCTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGATGAGGAAAGGAAGGGATACAGAACATTGAAAGATTGGCACTCTT  1000

seq1  ACTGTGACCTCTGGAACT-GGTTGAGAATGTAG-AAATATTTGGAGATGC  1048
      |||||||||||||||||| |||||||||||||| ||||||||||||||||
seq2  ACTGTGACCTCTGGAACTGGGTTGAGAATGTAGAAAATATTTGGAGATGC  1050

seq1  -AGGTTAGGTAAGCTTTAGAGCACT-GTGATCAGTGCTTGATGGACCATT  1096
       || ||||||||||||||||||||| ||||||||||| |||  ||| |||
seq2  AAGTTTAGGTAAGCTTTAGAGCACTGGTGATCAGTGC-TGAATGACAATT  1099

seq1  CTGGTGGTGATATTCCAAAAATGCTTAGAGAAATACAGACTAAAGTCAG-  1145
      ||||| ||||||||||||||||||||| || ||| |||||| ||||||| 
seq2  CTGGT-GTGATATTCCAAAAATGCTTAAAGGAATTCAGACT-AAGTCAGC  1147

seq1  TGCTTCAATGAGGTTTCAAACAAGAA-CAGCCAAT-GAGTACAG--CAGA  1191
      ||| ||||||| | ||| |||||||| |||||||| |||| |||  ||||
seq2  TGCCTCAATGA-GCTTCCAACAAGAACCAGCCAATGGAGTTCAGGCCAGA  1196

seq1  AATATA-------CTCACCT  1204
      ||||||       |||||||
seq2  AATATATATCTCTCTCACCT  1216


seq1: chr6_8764548_8765739
seq2: B6Ng01-214H07.g_62_1252 (reverse)

seq1  ACATAATAAATTTGAGA-ATTGCATTTGCAGTGACACGAAGGAATTAACA  49
      |||||||||| |||||| ||||   |||||||||| ||| |  |||||||
seq2  ACATAATAAA-TTGAGAGATTGTCATTGCAGTGAC-CGACG--ATTAACA  46

seq1  TTTCCTTGGAAGA-GCTGATGTTGAAATTATTTGCCTTAGAGAAAAATGA  98
       || ||||||||| ||||||| ||||||||||||| |  |||||||||||
seq2  ATT-CTTGGAAGAGGCTGATG-TGAAATTATTTGCTTAGGAGAAAAATGA  94

seq1  TCCTTC-TCTCC-TGTATTTTGAAGTTAAAAGTTG-TATGAGGTGGGAAG  145
        |||| ||||| |||||||||||||||||||||| |||||||| || ||
seq2  ATCTTCTTCTCCTTGTATTTTGAAGTTAAAAGTTGTTATGAGGTTGG-AG  143

seq1  AGCCTTTTGCTGTTTGCTTGTTCTTTCT-CTATCATAGG-AAAGGAATTT  193
      |||||||||||||||||||||||||||| |||||||||| ||||||||||
seq2  AGCCTTTTGCTGTTTGCTTGTTCTTTCTCCTATCATAGGAAAAGGAATTT  193

seq1  CTTTGAGAAGACGATAACATCTCTCTGTTATCCTCCTTGATGAACTGACA  243
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CTTTGAGAAGACGATAACATCTCTCTG-TATCCTCCTTGATGAACTGACA  242

seq1  TTTTATTCATGTCTCAGAGGAGCTGGAACGACATGAGGCACTTTAATGGA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTCATGTCTCAGAGGAGCTGGAACGACATGAGGCACTTTAATGGA  292

seq1  GAGAGACATGTTTTCTAAACAAGTTATTCTATTTTTCTTGACCTCTGCTC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGACATGTTTTCTAAACAAGTTATTCTATTTTTCTTGACCTCTGCTC  342

seq1  TTCCATATGTGACTTAGTATAAGCACAATTTACAAATCATAAGCTGACAT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATATGTGACTTAGTATAAGCACAATTTACAAATCATAAGCTGACAT  392

seq1  TCTTCAGACTTAGCTTTCACTAGGAAACAACATGGTAGAAATGTCAGATC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAGACTTAGCTTTCACTAGGAAACAACATGGTAGAAATGTCAGATC  442

seq1  GAAGCAAACAGCTCTTAGGTACAGGTTGTGCTGTGTATGTCCTGGGAAAT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAAACAGCTCTTAGGTACAGGTTGTGCTGTGTATGTCCTGGGAAAT  492

seq1  AAATGCCAATTCAACTTCTGTCAGTCCATGTTGTGTCAGAAAACTTCCTA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCCAATTCAACTTCTGTCAGTCCATGTTGTGTCAGAAAACTTCCTA  542

seq1  ATGATTCCTTTTTTCAATTTTGTCTTTTTGTGACTGAAACTCACTCCCCC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTCCTTTTTTCAATTTTGTCTTTTTGTGACTGAAACTCACTCCCCC  592

seq1  TGCCACATTGCCATGCTATTCTGTTATTGGTATTTATTTTGCTGAATTTC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACATTGCCATGCTATTCTGTTATTGGTATTTATTTTGCTGAATTTC  642

seq1  CTTCATAAATTGATTTTTGTCTTGCTCTTTTTAATTTTTAATTCTCCCAA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATAAATTGATTTTTGTCTTGCTCTTTTTAATTTTTAATTCTCCCAA  692

seq1  TTTTTCTGATTTTTTGTAAATTTTTTATTATCAATGACTTTCTGGAGAAT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTGATTTTTTGTAAATTTTTTATTATCAATGACTTTCTGGAGAAT  742

seq1  AACTCTCTTAAAAATTTAATGAATTAAAATCATGAATTTATTTGATTGAT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTCTTAAAAATTTAATGAATTAAAATCATGAATTTATTTGATTGAT  792

seq1  GTATATGTATGTGTGTGCAGGATCGCTTGCCTGTGTGGGTGCATGTGGAG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATGTATGTGTGTGCAGGATCGCTTGCCTGTGTGGGTGCATGTGGAG  842

seq1  TTCAGAGGCTGGTGTTGGGATCTCTTTCTCAATTGGAAGGAGCATTCTCA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGGCTGGTGTTGGGATCTCTTTCTCAATTGGAAGGAGCATTCTCA  892

seq1  GTTAAATGAGACTTATTCTGTTTATAAGATTTCACTAAAATTCATTCCTC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAATGAGACTTATTCTGTTTATAAGATTTCACTAAAATTCATTCCTC  942

seq1  AATACATTAAACTTGTAATTGTCCTTTTATCCCTGTATTTGCTACAACTT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATTAAACTTGTAATTGTCCTTTTATCCCTGTATTTGCTACAACTT  992

seq1  CAAACTAATAAGTGGAATGCAGACATCCCAGTGTGATCGAAATGGTTTTC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTAATAAGTGGAATGCAGACATCCCAGTGTGATCGAAATGGTTTTC  1042

seq1  CATGGTCATCTGAGGGGCTTTTTGTTATCTTTGAGATCCCTTGAGGAAAA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTCATCTGAGGGGCTTTTTGTTATCTTTGAGATCCCTTGAGGAAAA  1092

seq1  ACTCTATCCTTGCTATTTGCACTACATTTTGTGCCTTTTCACACATATTC  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTATCCTTGCTATTTGCACTACATTTTGTGCCTTTTCACACATATTC  1142

seq1  CACATTTGCTTTGCTTTTCTGTGTCCACTTACGTGTAGTTACTGAATTC  1192
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTTGCTTTGCTTTTCTGTGTCCACTTACGTGTAGTTACTGAATTC  1191


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