BAC Information

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BAC

Clone NameB6Ng01-214I12
Chromosome6 (Build37)
Map Location 115,893,305 - 116,030,378
singlet/doubletdoublet
Overlap geneH1foo, Plxnd1, Tmcc1
Upstream gene1500001M20Rik, LOC100043420, Syn2, Timp4, Pparg, Tsen2, 2510049J12Rik, Mkrn2, Raf1, LOC100043759, D830050J10Rik, Tmem40, EG620848, Cand2, Rpl32, BC060267, Mbd4, Ift122, Rho
Downstream geneLOC100043425, EG666634, EG666648, D6Wsu116e, Anubl1, March8, Alox5, LOC100043432, Olfr211, Olfr212, Olfr213, EG434080, Olfr214, Olfr215, Zfp422, Rassf4, 8430408G22Rik, C230095G01Rik, LOC100043439
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-214I12.bB6Ng01-214I12.g
ACCGA031755GA031756
length1,0451,188
definitionB6Ng01-214I12.b B6Ng01-214I12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,893,305 - 115,894,346)(116,029,180 - 116,030,378)
sequence
gaattcaagggagaggaaagcgccatgagcctgatggaaaatctcaaact
tttcctcaaaggaagtagggacccatgggagattctagaaatggagtgag
gtctgtttcactgcaaagaactttgagggccacagcctttctcaaaccag
acttatgatggatggtgagttctctgggaaaattccagaaaatagaggga
tcacacacacagaggggagaagcttgcaagtaaggcatcctcaaccttca
cctttcccaaagcagctgctgctaccacactggtgtgagtcctggtagac
ctgagctcgagtcagggccctgcaaggccgtgcattacagtaatgagcag
accttatctacaggagggagctgaaggccttcttcagcgctggcctcccc
attctcgcagctgtgtcctatctccctgtcaacaggcaacaattgactga
gcctgttcctatcctgacaagtttttagtttgtcttgaatttctgatgat
actggggcaaagttcccatttgttagtccccctgtttttccccagggagg
gatggctgagccgtgaagcaagctcatctttgctccataaaatgttgagt
tgcctctaaggtggctggcctgtcagctctcccagcttctgtgtgattcc
cgtacagtcactatgagaaatgctcatctcatatttcataagcaatattg
acattcagccaggagagagattcagcttgttgtaatccatcctggttttg
tttccttttggtttgactctttttttgagtcagggcttgcagtctaggct
agccccaaacgccctagcctcctgcctcagtttccccagtgtgggaacaa
gaacaagccacagtcatatatgctgtagcatgttttacagcgatggagtc
atttactcatgcccatgtggcttcactgagaagtcacttctgtctttcat
cttgatgactcaacccttcctaggaaacaggcagaatgaccaggctcggg
agaatccctttcccaagtcataagccctgttggggggtggggggg
gaattcaactttgtgttgaccatcttctgttaaaaacccagattaaactc
tgacatttgaaaccagtatgcaaagaggtatatgagctgtctgtcactta
gactgtttcccagtatcaaggaagattaccaaaaagctgcaagctttggc
tggttcctgtattgaatataagattctagctactggggctggagggatgg
ctcagccgttaaacactaggctcacaacgaaaaatataagaatctagcca
ctgaaccctgattgtacagcaagcccttgctttactttatagacataaat
aagaatgacgcatgaaggatgccttcctacctttcataaaatcattgtta
atttttcttatatatttatctacatatatattccttgcttcatttaagtt
cctgatgaattcgctaacacttttttttaacagctaacaaaaaattagag
tgagaactggtgttgccagaaaaaaaatccaaagcgctcaaatgtgttta
ctttagtttatatcagtctgtagttcaattatctttcttctctccttcaa
ccccccccccccatatacccccacagagctgaggacaaaacttagggcct
tgcgctgcaagcactctaccactaagataaatccccaacccctacctttc
ttcttattcccctttatattttgttcttgaatcatatttcttactgagct
tttaaatgcacataaacttgtttttgttttgtttgaaagagcctttcacc
aggtagtgggagcacactcctttgatcccagcacttgggaggcagaggca
ggtgaatttctgagttcgaggccagcctggtctacagagtgagctccagg
acagctagggctacacagagaaaccctgtctcaaaaaaaagaaaagaaaa
agagtctttgtaatccaggctaacctcagatgtgtaatgacctttccacc
taccaagtgttgtagctactagcctgtggtacatcacacataaactttgt
aacttatcttaaatcattttttggaaataaagtagatgttgattaatatc
acagttattacaacagaattaaaaataacatgccaacaaaattaattaat
atacaaggctgagtcaagatttctagtccctgaaatcttgagcagagatt
tacttttggaaaccagcttcgaattaggaacaactgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_115893305_115894346
seq2: B6Ng01-214I12.b_45_1089

seq1  GAATTCAAGGGAGAGGAAAGCGCCATGAGCCTGATGGAAAATCTCAAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGGAGAGGAAAGCGCCATGAGCCTGATGGAAAATCTCAAACT  50

seq1  TTTCCTCAAAGGAAGTAGGGACCCATGGGAGATTCTAGAAATGGAGTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCAAAGGAAGTAGGGACCCATGGGAGATTCTAGAAATGGAGTGAG  100

seq1  GTCTGTTTCACTGCAAAGAACTTTGAGGGCCACAGCCTTTCTCAAACCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTTTCACTGCAAAGAACTTTGAGGGCCACAGCCTTTCTCAAACCAG  150

seq1  ACTTATGATGGATGGTGAGTTCTCTGGGAAAATTCCAGAAAATAGAGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATGATGGATGGTGAGTTCTCTGGGAAAATTCCAGAAAATAGAGGGA  200

seq1  TCACACACACAGAGGGGAGAAGCTTGCAAGTAAGGCATCCTCAACCTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACACACAGAGGGGAGAAGCTTGCAAGTAAGGCATCCTCAACCTTCA  250

seq1  CCTTTCCCAAAGCAGCTGCTGCTACCACACTGGTGTGAGTCCTGGTAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCCAAAGCAGCTGCTGCTACCACACTGGTGTGAGTCCTGGTAGAC  300

seq1  CTGAGCTCGAGTCAGGGCCCTGCAAGGCCGTGCATTACAGTAATGAGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCTCGAGTCAGGGCCCTGCAAGGCCGTGCATTACAGTAATGAGCAG  350

seq1  ACCTTATCTACAGGAGGGAGCTGAAGGCCTTCTTCAGCGCTGGCCTCCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTATCTACAGGAGGGAGCTGAAGGCCTTCTTCAGCGCTGGCCTCCCC  400

seq1  ATTCTCGCAGCTGTGTCCTATCTCCCTGTCAACAGGCAACAATTGACTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCGCAGCTGTGTCCTATCTCCCTGTCAACAGGCAACAATTGACTGA  450

seq1  GCCTGTTCCTATCCTGACAAGTTTTTAGTTTGTCTTGAATTTCTGATGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTTCCTATCCTGACAAGTTTTTAGTTTGTCTTGAATTTCTGATGAT  500

seq1  ACTGGGGCAAAGTTCCCATTTGTTAGTCCCCCTGTTTTTCCCCAGGGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGGCAAAGTTCCCATTTGTTAGTCCCCCTGTTTTTCCCCAGGGAGG  550

seq1  GATGGCTGAGCCGTGAAGCAAGCTCATCTTTGCTCCATAAAATGTTGAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCTGAGCCGTGAAGCAAGCTCATCTTTGCTCCATAAAATGTTGAGT  600

seq1  TGCCTCTAAGGTGGCTGGCCTGTCAGCTCTCCCAGCTTCTGTGTGATTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTAAGGTGGCTGGCCTGTCAGCTCTCCCAGCTTCTGTGTGATTCC  650

seq1  CGTACAGTCACTATGAGAAATGCTCATCTCATATTTCATAAGCAATATTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTACAGTCACTATGAGAAATGCTCATCTCATATTTCATAAGCAATATTG  700

seq1  ACATTCAGCCAGGAGAGAGATTCAGCTTGTTGTAATCCATCCTGGTTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCAGCCAGGAGAGAGATTCAGCTTGTTGTAATCCATCCTGGTTTTG  750

seq1  TTTCCTTTTGGTTTGACTCTTTTTTTGAGTCAGGGGCTTGCAGTCTAGGC  800
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTTCCTTTTGGTTTGACTCTTTTTTTGAGTCA-GGGCTTGCAGTCTAGGC  799

seq1  TAGCCCCAAACGCCCTAGCCTCCTGCCTCAGTTTCCCCAGTGTGGGAACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCCAAACGCCCTAGCCTCCTGCCTCAGTTTCCCCAGTGTGGGAACA  849

seq1  AGAACAAGCCACAGTCATATATGCTGTAGCATGTTTTACAGCGATGGAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAAGCCACAGTCATATATGCTGTAGCATGTTTTACAGCGATGGAGT  899

seq1  CATTTACTCATGCCCATGTGGCTTCACTGAGAAGTCACTTCTGTCTTTCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTACTCATGCCCATGTGGCTTCACTGAGAAGTCACTTCTGTCTTTCA  949

seq1  TCTTGATGACTCAACCCTTCCTAGGAAACAGGCAGAATGACCAGGCTCGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGATGACTCAACCCTTCCTAGGAAACAGGCAGAATGACCAGGCTCGG  999

seq1  GAG-ATCCC-TTCCCAAGTCAT-AGCCCTGTT-GGGGGTGGGGGGG  1042
      ||| ||||| |||||||||||| ||||||||| |||||||||||||
seq2  GAGAATCCCTTTCCCAAGTCATAAGCCCTGTTGGGGGGTGGGGGGG  1045

seq1: chr6_116029180_116030378
seq2: B6Ng01-214I12.g_64_1251 (reverse)

seq1  CACAGTTGGTTCCTTAATTCTAAAGCTGTGTTTCAAAAAGTACATCTCTG  50
      ||||||| ||||| ||||||  |||||| ||||| ||||||| |||||||
seq2  CACAGTT-GTTCC-TAATTC-GAAGCTG-GTTTCCAAAAGTAAATCTCTG  46

seq1  CTCATGTATTTCA-GGACTAGAAATCCTGACTCAGCTTTTGTATATTATA  99
      |||| | |||||| |||||||||||| |||||||||  ||||||||||  
seq2  CTCAAG-ATTTCAGGGACTAGAAATCTTGACTCAGC-CTTGTATATTAAT  94

seq1  TAATTTTGTT-GCATGTTATTTTTTAATTCTGTTGTAATAACTGGTGAAT  148
      |||||||||| |||||||| ||||||||||||||||||||||| ||||  
seq2  TAATTTTGTTGGCATGTTA-TTTTTAATTCTGTTGTAATAACT-GTGA--  140

seq1  TATTAATTCACATCTTACTTTATTTCCAAAAAATGATTTTAAGATAAGTT  198
      |||||||  ||||| ||||||||||||||||||||| |||||||||||||
seq2  TATTAATCAACATC-TACTTTATTTCCAAAAAATGA-TTTAAGATAAGTT  188

seq1  ACAAAGTTTATGTGTGATGGTACCACAGGCTAGTAGCTACAACACTTGGT  248
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ACAAAGTTTATGTGTGAT-GTACCACAGGCTAGTAGCTACAACACTTGGT  237

seq1  AGGTGGAAAGGTCATTACACATCTGAGGTTAGCCTGGATTACAAAGACTC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGAAAGGTCATTACACATCTGAGGTTAGCCTGGATTACAAAGACTC  287

seq1  TTTTTCTTTTCTTTTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTAGCTG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTTTCTTTTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTAGCTG  337

seq1  TCCTGGAGCTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATTCAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGAGCTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATTCAC  387

seq1  CTGCCTCTGCCTCCCAAGTGCTGGGATCAAAGGAGTGTGCTCCCACTACC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCTGCCTCCCAAGTGCTGGGATCAAAGGAGTGTGCTCCCACTACC  437

seq1  TGGTGAAAGGCTCTTTCAAACAAAACAAAAACAAGTTTATGTGCATTTAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAAAGGCTCTTTCAAACAAAACAAAAACAAGTTTATGTGCATTTAA  487

seq1  AAGCTCAGTAAGAAATATGATTCAAGAACAAAATATAAAGGGGAATAAGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCAGTAAGAAATATGATTCAAGAACAAAATATAAAGGGGAATAAGA  537

seq1  AGAAAGGTAGGGGTTGGGGATTTATCTTAGTGGTAGAGTGCTTGCAGCGC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGTAGGGGTTGGGGATTTATCTTAGTGGTAGAGTGCTTGCAGCGC  587

seq1  AAGGCCCTAAGTTTTGTCCTCAGCTCTGTGGGGGTATATGGGGGGGGGGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCCTAAGTTTTGTCCTCAGCTCTGTGGGGGTATATGGGGGGGGGGG  637

seq1  GTTGAAGGAGAGAAGAAAGATAATTGAACTACAGACTGATATAAACTAAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAAGGAGAGAAGAAAGATAATTGAACTACAGACTGATATAAACTAAA  687

seq1  GTAAACACATTTGAGCGCTTTGGATTTTTTTTCTGGCAACACCAGTTCTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACACATTTGAGCGCTTTGGATTTTTTTTCTGGCAACACCAGTTCTC  737

seq1  ACTCTAATTTTTTGTTAGCTGTTAAAAAAAAGTGTTAGCGAATTCATCAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTAATTTTTTGTTAGCTGTTAAAAAAAAGTGTTAGCGAATTCATCAG  787

seq1  GAACTTAAATGAAGCAAGGAATATATATGTAGATAAATATATAAGAAAAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTAAATGAAGCAAGGAATATATATGTAGATAAATATATAAGAAAAA  837

seq1  TTAACAATGATTTTATGAAAGGTAGGAAGGCATCCTTCATGCGTCATTCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAATGATTTTATGAAAGGTAGGAAGGCATCCTTCATGCGTCATTCT  887

seq1  TATTTATGTCTATAAAGTAAAGCAAGGGCTTGCTGTACAATCAGGGTTCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATGTCTATAAAGTAAAGCAAGGGCTTGCTGTACAATCAGGGTTCA  937

seq1  GTGGCTAGATTCTTATATTTTTCGTTGTGAGCCTAGTGTTTAACGGCTGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTAGATTCTTATATTTTTCGTTGTGAGCCTAGTGTTTAACGGCTGA  987

seq1  GCCATCCCTCCAGCCCCAGTAGCTAGAATCTTATATTCAATACAGGAACC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCCCTCCAGCCCCAGTAGCTAGAATCTTATATTCAATACAGGAACC  1037

seq1  AGCCAAAGCTTGCAGCTTTTTGGTAATCTTCCTTGATACTGGGAAACAGT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAAGCTTGCAGCTTTTTGGTAATCTTCCTTGATACTGGGAAACAGT  1087

seq1  CTAAGTGACAGACAGCTCATATACCTCTTTGCATACTGGTTTCAAATGTC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTGACAGACAGCTCATATACCTCTTTGCATACTGGTTTCAAATGTC  1137

seq1  AGAGTTTAATCTGGGTTTTTAACAGAAGATGGTCAACACAAAGTTGAATT  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTTAATCTGGGTTTTTAACAGAAGATGGTCAACACAAAGTTGAATT  1187

seq1  C  1199
      |
seq2  C  1188