BAC Information

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BAC

Clone NameB6Ng01-214I16
Chromosome6 (Build37)
Map Location 16,527,207 - 16,646,118
singlet/doubletdoublet
Overlap genenone
Upstream geneMdfic, LOC100041116
Downstream geneTcfec, EG435881, Tes, EG232599, Cav2, Cav1, Met, Capza2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-214I16.bB6Ng01-214I16.g
ACCGA031763GA031764
length1,2141,094
definitionB6Ng01-214I16.b B6Ng01-214I16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,644,899 - 16,646,118)(16,527,207 - 16,528,311)
sequence
gaattcattggctttcattgttaagtatttgatcatttgtattaacacat
gggctcaaattcctttgtttcactactttctgatttacttaaagtatact
gccttgaagactaaatcaacttaaaggagctgcatctgagccttaaggag
ctgtgcacattgacctgggaacagctccattttcctgtttccacccggcc
ccccaggggagctaggagctaggctcttaactcacagttaggagaaggta
aatgatctaatgaccttctctgaaaagttaaaaataaaaacacccctgcc
cctgatggaattactcctccagatggtctttgggggcttagtgctgactg
aaatcttaaggtttccattttcattccgaagatcacttctttacatgatt
tctcctagctaattggaaacagtatgacctaatggaaggaacaaaggata
acggactgcaaatgttgaggtttaatccaggccctgtcagtgactactgc
ttagcgtttcaaccacattacatagacctttcagctttattttgctgtat
ttattttgtgtatgagaatttctaactccagagtagtgtatgcccataag
gacaagcaggggatgagagacattgctctcttgcagtattattataagag
caatattatttgtaagagatacaggtattcatgctcttgaaatgtgatag
agagattaacacacacacacacacttgatacatttacttgctactgtagt
ctgaaacctatattttaatccactatgaagtcagggtggaattgctggaa
aatcccttgtacaagtggctagggttgaggtcagttgatctaacacattt
ctaaaagcaaagatatatttcatcccagtttacaaaaataaatgtaatct
tattgttatgaggtcaaaaactatcttctaggtactcttttaaataatga
tctatgctgccattatttaaacacaaaacagagttatctgaaagggtagg
gaacataaattgaaaaaaatgcctccataagatagagctatatgaaaaaa
aaaagatagagctataaggcattttctaatactgattgatagagagattc
agcccatggtggggtgctcatgcttggtctgttgtcctgggattctatgg
gagacgaactgcaagccataaagcaggccagtagagacacttctctcctt
gtcctctcgcgcat

gaattctttgaaatctccataaatctctattttaaaatacacttaaagct
tcagtagagtacttataactgctttttataatagatatataagtatgcac
atggatatgaaaaatacaaacacgtatttacaaaatatatatgtacttgt
ttgtattgaagtttagaaaaagtccactaaaatgtagcaaatgaaggcct
tgtacataataatttcatctaaagttaattatgtttataaactagaagct
attttttgagctgttctcacaaaattgtcaaggatataaagctttgtgta
gagctaatgcaagtattcattgtaactaacagaattggggctctttcagg
gaagaagtgaaaatttcaaaggactttatatacaaccaaatcctgaaata
actggagaatgacttctgttcctatgaatacagagcctgacactttgaca
aaaccttcttttagaataataaagtctccatagtgtacgattaaaaaaaa
aaagaatcattgcattgctatttcttctggcagtaggaaagtggagagga
attgagagagttaatggaaaattaataataaaaaagaaagggcaaaagtg
atgtcaataatgtgttggatgagctatcgggtcatagacatttatatagt
caagagagtagaagatggagggagggttgatcacagtctataaatactgg
gcaagtatctgtacagacgaaacgtgatgattcagagcatcaggatcaga
aggacaagaggcactgatctgaagctaaagaagagcatattcagcctcat
gttatactaagaaatgcttggcagcagtgagaggatgtggcattagaaat
aaaaatcaaggacaatacataaagtttagagaagggttgaaaatgatgta
tctttagcacagagagtaaatcagacatgatgaagggagatggaaaacag
gatcagagagcacaggtctggatgcatatagcttgccatcattctttcta
ttatgtatagtctcagaaaatctcattttaaaatttacaacaaaatttgc
agcagtcaaagcgattggggaaaaatgtccagtactgctgtata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_16644899_16646118
seq2: B6Ng01-214I16.b_48_1261 (reverse)

seq1  ATGCG---GAGGACAAGGAGAGGTGCTGCT-TACTGGCTTGCTTTTAATG  46
      |||||   ||||||||||||||  |   || ||||||| ||||||  |||
seq2  ATGCGCGAGAGGACAAGGAGAGAAGTGTCTCTACTGGCCTGCTTT--ATG  48

seq1  GCTTGCCCAGTCTGCTCTCCCATAGAA-CCCAGGACCACCAGCCCAGGCA  95
      |||||  |||| |  |||||||||||| ||||||| || ||| ||| |||
seq2  GCTTG--CAGT-TCGTCTCCCATAGAATCCCAGGA-CAACAGACCAAGCA  94

seq1  TGGAACCACCCACAATGGGCTGGATCCTCTCTATCAATCAGTAATTAAGA  145
      | || |  ||||| |||||||| || |||||||||||||||||  | |||
seq2  T-GAGCACCCCACCATGGGCTGAAT-CTCTCTATCAATCAGTA--TTAGA  140

seq1  AAATGCCTTATAGCTCTATCTTTTTTTTTCATTATAGCTCTATCTTATGG  195
      |||||||||||||||||||||||||||||   ||||||||||||||||||
seq2  AAATGCCTTATAGCTCTATCTTTTTTTTTTCATATAGCTCTATCTTATGG  190

seq1  AGGCATTTTTTTCAATTTATGTTCCCTACCCTTTCAGATAACTCTGTTTT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATTTTTTTCAATTTATGTTCCCTACCCTTTCAGATAACTCTGTTTT  240

seq1  GTGTTTAAATAATGGCAGCATAGATCATTATTTTAAAGAGTACCTAGAAG  295
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GTGTTTAAATAATGGCAGCATAGATCATTATTTAAAAGAGTACCTAGAAG  290

seq1  ATAGTTTTTTGACCTCATAACAATAAGATTACATTTATTTTTGTAAACTG  345
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAG-TTTTTGACCTCATAACAATAAGATTACATTTATTTTTGTAAACTG  339

seq1  GGATGAAATATATCTTTGCTTTTAGAAATGTGTTAGATCAACTGACCTCA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGAAATATATCTTTGCTTTTAGAAATGTGTTAGATCAACTGACCTCA  389

seq1  ACCCTAGCCACTTGTACAAGGGATTTTCCAGCAATTCCACCCTGACTTCA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTAGCCACTTGTACAAGGGATTTTCCAGCAATTCCACCCTGACTTCA  439

seq1  TAGTGGATTAAAATATAGGTTTCAGACTACAGTAGCAAGTAAATGTATCA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGATTAAAATATAGGTTTCAGACTACAGTAGCAAGTAAATGTATCA  489

seq1  AGTGTGTGTGTGTGTGTTAATCTCTCTATCACATTTCAAGAGCATGAATA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGTGTGTGTGTGTTAATCTCTCTATCACATTTCAAGAGCATGAATA  539

seq1  CCTGTATCTCTTACAAATAATATTGCTCTTATAATAATACTGCAAGAGAG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTATCTCTTACAAATAATATTGCTCTTATAATAATACTGCAAGAGAG  589

seq1  CAATGTCTCTCATCCCCTGCTTGTCCTTATGGGCATACACTACTCTGGAG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTCTCTCATCCCCTGCTTGTCCTTATGGGCATACACTACTCTGGAG  639

seq1  TTAGAAATTCTCATACACAAAATAAATACAGCAAAATAAAGCTGAAAGGT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAATTCTCATACACAAAATAAATACAGCAAAATAAAGCTGAAAGGT  689

seq1  CTATGTAATGTGGTTGAAACGCTAAGCAGTAGTCACTGACAGGGCCTGGA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTAATGTGGTTGAAACGCTAAGCAGTAGTCACTGACAGGGCCTGGA  739

seq1  TTAAACCTCAACATTTGCAGTCCGTTATCCTTTGTTCCTTCCATTAGGTC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACCTCAACATTTGCAGTCCGTTATCCTTTGTTCCTTCCATTAGGTC  789

seq1  ATACTGTTTCCAATTAGCTAGGAGAAATCATGTAAAGAAGTGATCTTCGG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGTTTCCAATTAGCTAGGAGAAATCATGTAAAGAAGTGATCTTCGG  839

seq1  AATGAAAATGGAAACCTTAAGATTTCAGTCAGCACTAAGCCCCCAAAGAC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAAATGGAAACCTTAAGATTTCAGTCAGCACTAAGCCCCCAAAGAC  889

seq1  CATCTGGAGGAGTAATTCCATCAGGGGCAGGGGTGTTTTTATTTTTAACT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGGAGGAGTAATTCCATCAGGGGCAGGGGTGTTTTTATTTTTAACT  939

seq1  TTTCAGAGAAGGTCATTAGATCATTTACCTTCTCCTAACTGTGAGTTAAG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGAGAAGGTCATTAGATCATTTACCTTCTCCTAACTGTGAGTTAAG  989

seq1  AGCCTAGCTCCTAGCTCCCCTGGGGGGCCGGGTGGAAACAGGAAAATGGA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTAGCTCCTAGCTCCCCTGGGGGGCCGGGTGGAAACAGGAAAATGGA  1039

seq1  GCTGTTCCCAGGTCAATGTGCACAGCTCCTTAAGGCTCAGATGCAGCTCC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTCCCAGGTCAATGTGCACAGCTCCTTAAGGCTCAGATGCAGCTCC  1089

seq1  TTTAAGTTGATTTAGTCTTCAAGGCAGTATACTTTAAGTAAATCAGAAAG  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGTTGATTTAGTCTTCAAGGCAGTATACTTTAAGTAAATCAGAAAG  1139

seq1  TAGTGAAACAAAGGAATTTGAGCCCATGTGTTAATACAAATGATCAAATA  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGAAACAAAGGAATTTGAGCCCATGTGTTAATACAAATGATCAAATA  1189

seq1  CTTAACAATGAAAGCCAATGAATTC  1220
      |||||||||||||||||||||||||
seq2  CTTAACAATGAAAGCCAATGAATTC  1214


seq1: chr6_16527207_16528311
seq2: B6Ng01-214I16.g_67_1160

seq1  GAATTCTTTGAAATCTCCATAAATCTCTATTTTAAAATACACTTAAAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGAAATCTCCATAAATCTCTATTTTAAAATACACTTAAAGCT  50

seq1  TCAGTAGAGTACTTATAACTGCTTTTTATAATAGATATATAAGTATGCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAGAGTACTTATAACTGCTTTTTATAATAGATATATAAGTATGCAC  100

seq1  ATGGATATGAAAAATACAAACACGTATTTACAAAATATATATGTACTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATATGAAAAATACAAACACGTATTTACAAAATATATATGTACTTGT  150

seq1  TTGTATTGAAGTTTAGAAAAAGTCCACTAAAATGTAGCAAATGAAGGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATTGAAGTTTAGAAAAAGTCCACTAAAATGTAGCAAATGAAGGCCT  200

seq1  TGTACATAATAATTTCATCTAAAGTTAATTATGTTTATAAACTAGAAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACATAATAATTTCATCTAAAGTTAATTATGTTTATAAACTAGAAGCT  250

seq1  ATTTTTTGAGCTGTTCTCACAAAATTGTCAAGGATATAAAGCTTTGTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTGAGCTGTTCTCACAAAATTGTCAAGGATATAAAGCTTTGTGTA  300

seq1  GAGCTAATGCAAGTATTCATTGTAACTAACAGAATTGGGGCTCTTTCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTAATGCAAGTATTCATTGTAACTAACAGAATTGGGGCTCTTTCAGG  350

seq1  GAAGAAGTGAAAATTTCAAAGGACTTTATATACAACCAAATCCTGAAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGTGAAAATTTCAAAGGACTTTATATACAACCAAATCCTGAAATA  400

seq1  ACTGGAGAATGACTTCTGTTCCTATGAATACAGAGCCTGACACTTTGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAGAATGACTTCTGTTCCTATGAATACAGAGCCTGACACTTTGACA  450

seq1  AAACCTTCTTTTAGAATAATAAAGTCTCCATAGTGTACGATTAAAAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTTCTTTTAGAATAATAAAGTCTCCATAGTGTACGATTAAAAAAAA  500

seq1  AAAGAATCATTGCATTGCTATTTCTTCTGGCAGTAGGAAAGTGGAGAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATCATTGCATTGCTATTTCTTCTGGCAGTAGGAAAGTGGAGAGGA  550

seq1  ATTGAGAGAGTTAATGGAAAATTAATAATAAAAAAGAAAGGGCAAAAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGAGAGTTAATGGAAAATTAATAATAAAAAAGAAAGGGCAAAAGTG  600

seq1  ATGTCAATAATGTGTTGGATGAGCTATCGGGTCATAGACATTTATATAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAATAATGTGTTGGATGAGCTATCGGGTCATAGACATTTATATAGT  650

seq1  CAAGAGAGTAGAAGATGGAGGGAGGGTTGATCACAGTCTATAAATACTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGAGTAGAAGATGGAGGGAGGGTTGATCACAGTCTATAAATACTGG  700

seq1  GCAAGTATCTGTACAGACGAAACGTGATGATTCAGAGCATCAGGATCAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTATCTGTACAGACGAAACGTGATGATTCAGAGCATCAGGATCAGA  750

seq1  AGGACAAGAGGCACTGATCTGAAGCTAAAGAAGAGCATATTCAGCCTCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAAGAGGCACTGATCTGAAGCTAAAGAAGAGCATATTCAGCCTCAT  800

seq1  GTTATACTAAGAAATGCTTGGCAGCAGTGAGAGGATGTGGCATTAGAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATACTAAGAAATGCTTGGCAGCAGTGAGAGGATGTGGCATTAGAAAT  850

seq1  AAAAATCAAGGACAATACATAAAGTTTAGAGAAGGGTTGAAAATGATGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCAAGGACAATACATAAAGTTTAGAGAAGGGTTGAAAATGATGTA  900

seq1  TCTTTAGCACAGAGAGTAAATCAGACATGATGAAGGGAGAATGGAAAACA  950
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TCTTTAGCACAGAGAGTAAATCAGACATGATGAAGGGAG-ATGGAAAACA  949

seq1  GGATCAGAAGAGGCACAGGTCTGGATGCATTAATAGCTTGCCATCATTCT  1000
      ||||||| ||| ||||||||||||||||||  ||||||||||||||||||
seq2  GGATCAG-AGA-GCACAGGTCTGGATGCAT--ATAGCTTGCCATCATTCT  995

seq1  TTCTATTATGTATAGTTCTCCAGAAAATCTCATTTTAAAATTTACAACAA  1050
      ||||||||||||||| ||| ||||||||||||||||||||||||||||||
seq2  TTCTATTATGTATAG-TCT-CAGAAAATCTCATTTTAAAATTTACAACAA  1043

seq1  AATTTGGAAGGCAGTCAAAGCGAATGGGGAAAAAAATGT-CAGTACCTGC  1099
      |||||| |  ||||||||||||| |||||  |||||||| ||||| ||||
seq2  AATTTGCA--GCAGTCAAAGCGATTGGGG--AAAAATGTCCAGTA-CTGC  1088

seq1  TGTATA  1105
      ||||||
seq2  TGTATA  1094


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