BAC Information

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BAC

Clone NameB6Ng01-215E08
Chromosome6 (Build37)
Map Location 105,569,961 - 105,717,676
singlet/doubletdoublet
Overlap geneLOC100043350, Cntn4
Upstream geneCntn6, LOC384470, LOC100043716
Downstream geneIl5ra
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-215E08.bB6Ng01-215E08.g
ACCGA032286GA032287
length1,138424
definitionB6Ng01-215E08.b B6Ng01-215E08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,716,532 - 105,717,676)(105,569,961 - 105,570,382)
sequence
gaattcactcagtgtttgaccttgattgtcttatagactctgtcaatcac
agtggcatgtgattcttcaagccaaggtaaatttcctctgtaactacaat
cagattgttgctaaggcactgctgtcagtcactgagttattcccaaaggt
aggctttcccggagtatgcctgagagtcaacaaactctcagttaaatgcc
attagaggacaacttttcctgcatataggattattatgcaatatctaact
ataaggacagacttgagaaatttagtttaatgaagcaagtcaaggcttac
cctaaaagaaaacataatcctcaattttaatccaaccaaaccaattatgc
aatacttagcagagtcactcaaaaacatcttactagacacatcagtgaga
caaaacgttcaaggtatgttttttaattatttttttattaaatttactgt
ggactagtgctcatgtaataggagggtagtttctggtgtccacggaggtc
agaggagtcagcatccacaaagataaagtcacaggatgttactggtgtag
gtgctgtgtcctctatcagaatagaagtcacttttagctactgagttacc
ctctagcccataaagacatgtgttttgtttgtttgtttgttttgttttga
agtcatggaaaaatatctattgtcacatacatttgatgtcattaatttag
attccaaatctactctttgctacataatgatcataaggataaaatttctg
agcttcatttaactaacataaaatgaaactactaaaatatatcttcctgg
gttaccatgaagatagagttacacaaaaatattgctagaatcaagtaaga
tctactaggtatgttcttaaatgttagtttccaatcctaatcttctaaca
attattttatgtaaccttgggattttaatagactggttgcattttaacca
gattagggcaattataaactcatcagaaaaaaaaaaaataaaggaaacta
ttatttagagcttgtcttactttaccacaacatgtatcacccagctgcat
gatataatcactgcacaaagctacgtctgaaattaccatgaaaaatattg
caactaatgagatattcaaactaaaacatgtacagatt

aatacaccagggcatgctggcttctctctgaatatacagcatgcatgcag
cactgtttcatttcatggtgttctttgcctgcctgttgctcttctctaaa
gcacactttcttccaacatattaatctctagccactcaatcgtccgtgtg
tgtgtgtctgtgtgtgtgtgtgtaaaactctccattttctttcttttttt
cttttttctttttttttccattttttattaggtatttagctcatttacat
ttccaatgctataccaaaagtcccccatacccacccacccccactcccct
acccacccactccccctttttggccctggcgttcccctgtactggggcat
ataaaatatatatatatatatatatatatatatatatatatatatatata
tatatatatatatatatatagata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_105716532_105717676
seq2: B6Ng01-215E08.b_42_1179 (reverse)

seq1  AATCTGGTACATGTTTTAGTTTTGGAATATCTCAATTTAGTTTGGCCATA  50
      ||||| ||||||||||||||||  ||||||||||  ||||||  || |||
seq2  AATCT-GTACATGTTTTAGTTT--GAATATCTCA--TTAGTT--GCAATA  43

seq1  TTTTTCATGGTTATTTTCCAGACGTAGCTTTGTGCAGTGATTATATCATG  100
      ||||||||||| ||||  ||||||||||||||||||||||||||||||||
seq2  TTTTTCATGGTAATTT--CAGACGTAGCTTTGTGCAGTGATTATATCATG  91

seq1  CAGCTGGGTTGATTACATGTTGTGGTAAAGTAAGAC-AGCTCTAAATAAT  149
      |||||||| ||| ||||||||||||||||||||||| |||||||||||||
seq2  CAGCTGGG-TGA-TACATGTTGTGGTAAAGTAAGACAAGCTCTAAATAAT  139

seq1  AGTTTTCTTTA-TTTTTTTTTTTCTGATGAGTTTAT-ATTGCCCTAATCT  197
      ||||| ||||| |||||||||||||||||||||||| |||||||||||||
seq2  AGTTTCCTTTATTTTTTTTTTTTCTGATGAGTTTATAATTGCCCTAATCT  189

seq1  GGTTAAAATGCAACCAGTCTATTAAAAT-CCAAGGTTACATAAAATAATT  246
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GGTTAAAATGCAACCAGTCTATTAAAATCCCAAGGTTACATAAAATAATT  239

seq1  GTTAGAAGATTAGGATTGGAAACTAACATTTAAGAACATACCTAGTAGAT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGAAGATTAGGATTGGAAACTAACATTTAAGAACATACCTAGTAGAT  289

seq1  CTTACTTGATTCTAGCAATATTTTTGTGTAACTCTATCTTCATGGTAACC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTTGATTCTAGCAATATTTTTGTGTAACTCTATCTTCATGGTAACC  339

seq1  CAGGAAGATATATTTTAGTAGTTTCATTTTATGTTAGTTAAATGAAGCTC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGATATATTTTAGTAGTTTCATTTTATGTTAGTTAAATGAAGCTC  389

seq1  AGAAATTTTATCCTTATGATCATTATGTAGCAAAGAGTAGATTTGGAATC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTTTATCCTTATGATCATTATGTAGCAAAGAGTAGATTTGGAATC  439

seq1  TAAATTAATGACATCAAATGTATGTGACAATAGATATTTTTCCATGACTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTAATGACATCAAATGTATGTGACAATAGATATTTTTCCATGACTT  489

seq1  CAAAACAAAACAAACAAACAAACAAAACACATGTCTTTATGGGCTAGAGG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACAAAACAAACAAACAAACAAAACACATGTCTTTATGGGCTAGAGG  539

seq1  GTAACTCAGTAGCTAAAAGTGACTTCTATTCTGATAGAGGACACAGCACC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTCAGTAGCTAAAAGTGACTTCTATTCTGATAGAGGACACAGCACC  589

seq1  TACACCAGTAACATCCTGTGACTTTATCTTTGTGGATGCTGACTCCTCTG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACCAGTAACATCCTGTGACTTTATCTTTGTGGATGCTGACTCCTCTG  639

seq1  ACCTCCGTGGACACCAGAAACTACCCTCCTATTACATGAGCACTAGTCCA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCGTGGACACCAGAAACTACCCTCCTATTACATGAGCACTAGTCCA  689

seq1  CAGTAAATTTAATAAAAAAATAATTAAAAAACATACCTTGAACGTTTTGT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAATTTAATAAAAAAATAATTAAAAAACATACCTTGAACGTTTTGT  739

seq1  CTCACTGATGTGTCTAGTAAGATGTTTTTGAGTGACTCTGCTAAGTATTG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTGATGTGTCTAGTAAGATGTTTTTGAGTGACTCTGCTAAGTATTG  789

seq1  CATAATTGGTTTGGTTGGATTAAAATTGAGGATTATGTTTTCTTTTAGGG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATTGGTTTGGTTGGATTAAAATTGAGGATTATGTTTTCTTTTAGGG  839

seq1  TAAGCCTTGACTTGCTTCATTAAACTAAATTTCTCAAGTCTGTCCTTATA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCTTGACTTGCTTCATTAAACTAAATTTCTCAAGTCTGTCCTTATA  889

seq1  GTTAGATATTGCATAATAATCCTATATGCAGGAAAAGTTGTCCTCTAATG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGATATTGCATAATAATCCTATATGCAGGAAAAGTTGTCCTCTAATG  939

seq1  GCATTTAACTGAGAGTTTGTTGACTCTCAGGCATACTCCGGGAAAGCCTA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTAACTGAGAGTTTGTTGACTCTCAGGCATACTCCGGGAAAGCCTA  989

seq1  CCTTTGGGAATAACTCAGTGACTGACAGCAGTGCCTTAGCAACAATCTGA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGGGAATAACTCAGTGACTGACAGCAGTGCCTTAGCAACAATCTGA  1039

seq1  TTGTAGTTACAGAGGAAATTTACCTTGGCTTGAAGAATCACATGCCACTG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGTTACAGAGGAAATTTACCTTGGCTTGAAGAATCACATGCCACTG  1089

seq1  TGATTGACAGAGTCTATAAGACAATCAAGGTCAAACACTGAGTGAATTC  1145
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGACAGAGTCTATAAGACAATCAAGGTCAAACACTGAGTGAATTC  1138


seq1: chr6_105569961_105570382
seq2: B6Ng01-215E08.g_64_485

seq1  GAATTCAATACACCAGGGCATGCTGGCTTCTCTCTGAATATACAGCATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATACACCAGGGCATGCTGGCTTCTCTCTGAATATACAGCATGC  50

seq1  ATGCAGCACTGTTTCATTTCATGGTGTTCTTTGCCTGCCTGTTGCTCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGCACTGTTTCATTTCATGGTGTTCTTTGCCTGCCTGTTGCTCTTC  100

seq1  TCTAAAGCACACTTTCTTCCAACATATTAATCTCTAGCCACTCAATCGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAGCACACTTTCTTCCAACATATTAATCTCTAGCCACTCAATCGTC  150

seq1  CGTGTGTGTGTGTCTGTGTGTGTGTGTGTAAAACTCTCCATTTTCTTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTGTGTGTGTCTGTGTGTGTGTGTGTAAAACTCTCCATTTTCTTTCT  200

seq1  TTTTTTCTTTTTTCTTTTTTTTTCCATTTTTTATTAGGTATTTAGCTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTTTTTTCTTTTTTTTTCCATTTTTTATTAGGTATTTAGCTCAT  250

seq1  TTACATTTCCAATGCTATACCAAAAGTCCCCCATACCCACCCACCCCCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTTCCAATGCTATACCAAAAGTCCCCCATACCCACCCACCCCCAC  300

seq1  TCCCCTACCCACCCACTCCCCCTTTTTGGCCCTGGCGTTCCCCTGTACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTACCCACCCACTCCCCCTTTTTGGCCCTGGCGTTCCCCTGTACTG  350

seq1  GGGCATATAAAATATATATATATATATATATATATATATATATATATATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATATAAAATATATATATATATATATATATATATATATATATATATA  400

seq1  TATATATATATATATATATATA  422
      ||||||||||||||||||||||
seq2  TATATATATATATATATATATA  422


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