BAC Information

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BAC

Clone NameB6Ng01-215F17
Chromosome6 (Build37)
Map Location 18,865,541 - 18,977,542
singlet/doubletdoublet
Overlap geneLOC626180
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneEif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-215F17.bB6Ng01-215F17.g
ACCGA032348GA032349
length1,1631,031
definitionB6Ng01-215F17.b B6Ng01-215F17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,976,374 - 18,977,542)(18,865,541 - 18,866,568)
sequence
gaattccttccagtccagaagaggagatataaaatgcctaaggcacatcc
cagaacctcctgaatgagacagtgtgatggaaatttaatgaagagctcca
atgctatctgtgccacgcaattagaaccatgagcagtgcaagtgcagaaa
agtctgcatcctcaaatcaagcagggctatgatcatcatggagggacagc
atggcagagcttgaagcccaagtggtttctttacttgaaaatggaaacat
tcacaagggcagagatgataaagagctttttgtgtttggaattgcaaagt
aagttcataagatccatccctgaccatctggagtgggctactgcagaaga
tatgactgcctagaagaatgagctaccatcaacaggttagggctacaaag
atctgtgccagggcccatagttcaggtaacgtattctctagaacacacat
agcttctaaggtagtgttgaacgaaaagctcagagccctcccaaaagcct
gtccatctgagaaagagacttcatcccactgccttccttattcgtctacc
cccttaataaaactctcttacttactgaagcaagtcagactaagaaatac
aaatgcttcccatcctatgaagaaatctaaaatttagattctaggtcata
catataatataggaagagagaagaaaagtgagaatttatgtgggtaggga
gacagggagtatctgaaaagagttgagggaaaagaaagaatatgatcaaa
acatattttatgaaaaaattaattaaaaaatgaaagcaaatcagcaaaat
gagtctgatggaaagacaccttaccctagaactcaagaatgcccactgct
ctctggagaacactttgcttgaattaaacaaaggaagtgatttaattatt
ttgttcttcaaagagtaattcagcaaaataaaaccaatagcccaatcctt
gtttttcttttcttgttgtgaataacagtaagatgggatctgagtaattg
tatataaataattttaaattgttagtaactaccatgtcttttctgatcta
tgactctaggacctaataaaccacaaacttgatgacatttagttaagaaa
aaaaacacctcatttcctgctaaatatctaacaaggtttacaatttttct
ctctgaaagtata

gaattctatacaatgaggaagtataatgtagcaatttctttttagttcca
tggatcttgaggtagaatttcttaagggggaatatgttaggttaaataga
aattattacacacttagttgctcatgtaggtgttttatgcgaatacattt
ttatatgcaaaattattgttcaaatggcatcagggaacaatttcaaatga
attaataggttttaaaaattagtttggaaaggtggacatttgaaagtttt
aatgtaaatcaaaataaagttttaaaatttaaaatatcagcattttgaag
taatgagcttagatgtcagcaagtcacatttcttcaaaagccaatatttt
aaaagatgtacccaaacagattttcctgtgtttaaagacaataaacttta
tatctaacacacttaatttgctaataaaaataacctattcattctaaaga
aatttctaaaaggcatactataaaagagcacatttttatttcccaagggg
cttcattccaaaagataagcaaactcccaatctaagccttctttatgact
ctgttaagtacatctattacattacatcttgctataaaagcccttcacat
ggaaggcagcagaaatgagatctgtgttctgcatgccaaatcagcccaat
gtttcccagctgtgttggcgtacagctctgggctctccctttagagtccg
tgtaatgagttataattgatggtggtgatggggatgacaagacttcggag
cgagtgttttcatgtaatctcatttcactagagttgtgagcaatcactgt
gtcagtcttaaattcttacaatgaatgggatgcacttgaagcaataaaat
gatgctacaagattttacttaataacttgctcaggaaaatctaggtacac
actgtagaattcagctaatgagtgctgcctcttacatgacttggtaagat
aagtgcgtgctaaccagagtttttagaaccattaagaaaagaaattttgt
atcataattggagtttaagggcttctgagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18976374_18977542
seq2: B6Ng01-215F17.b_44_1206 (reverse)

seq1  TATACTTT-TCAGAGAAAAATGGTAAAAACTTTGTTAGATATATAAGCAG  49
      ||||||||   |||||||||| ||  |||| ||||||||||| | |||||
seq2  TATACTTTCAGAGAGAAAAATTGT--AAACCTTGTTAGATAT-TTAGCAG  47

seq1  GAATGGAAGTTGTTTTTTTTTTCTTAACT-AATGTCATCCAGTTTGTGGT  98
      |||   | |  || ||||||||||||||| ||||||||| ||||||||||
seq2  GAA---ATGAGGTGTTTTTTTTCTTAACTAAATGTCATCAAGTTTGTGGT  94

seq1  TTATTAGGTCCTAGAGTCATAGATCAGAAAGAACATGGTAGTTTACTAAC  148
      ||||||||||||||||||||||||||||||  ||||||||| ||||||||
seq2  TTATTAGGTCCTAGAGTCATAGATCAGAAAAGACATGGTAG-TTACTAAC  143

seq1  AATTTTAAAATTATTTATTATACAATTACTCAGATCCCATCTTACTGTTA  198
      || |||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AA-TTTAAAATTATTTA-TATACAATTACTCAGATCCCATCTTACTGTTA  191

seq1  TTCACAACAAGAAAAGAAAAAACAGGATT-GGCTATTGGTTTTATTTTGC  247
      |||||||||||||||||||||  |||||| ||||||||||||||||||||
seq2  TTCACAACAAGAAAAGAAAAACAAGGATTGGGCTATTGGTTTTATTTTGC  241

seq1  TGAATTACTCTTTGAAGAACAAAATAATTAAATCACTTCCTTTGTTTAAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTACTCTTTGAAGAACAAAATAATTAAATCACTTCCTTTGTTTAAT  291

seq1  TCAAGCAAAGTGTTCTCCAGAGAGCAGTGGGCATTCTTGAGTTCTAGGGT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCAAAGTGTTCTCCAGAGAGCAGTGGGCATTCTTGAGTTCTAGGGT  341

seq1  AAGGTGTCTTTCCATCAGACTCATTTTGCTGATTTGCTTTCATTTTTTAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGTCTTTCCATCAGACTCATTTTGCTGATTTGCTTTCATTTTTTAA  391

seq1  TTAATTTTTTCATAAAATATGTTTTGATCATATTCTTTCTTTTCCCTCAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTTTTCATAAAATATGTTTTGATCATATTCTTTCTTTTCCCTCAA  441

seq1  CTCTTTTCAGATACTCCCTGTCTCCCTACCCACATAAATTCTCACTTTTC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTCAGATACTCCCTGTCTCCCTACCCACATAAATTCTCACTTTTC  491

seq1  TTCTCTCTTCCTATATTATATGTATGACCTAGAATCTAAATTTTAGATTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCTTCCTATATTATATGTATGACCTAGAATCTAAATTTTAGATTT  541

seq1  CTTCATAGGATGGGAAGCATTTGTATTTCTTAGTCTGACTTGCTTCAGTA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATAGGATGGGAAGCATTTGTATTTCTTAGTCTGACTTGCTTCAGTA  591

seq1  AGTAAGAGAGTTTTATTAAGGGGGTAGACGAATAAGGAAGGCAGTGGGAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGAGAGTTTTATTAAGGGGGTAGACGAATAAGGAAGGCAGTGGGAT  641

seq1  GAAGTCTCTTTCTCAGATGGACAGGCTTTTGGGAGGGCTCTGAGCTTTTC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCTCTTTCTCAGATGGACAGGCTTTTGGGAGGGCTCTGAGCTTTTC  691

seq1  GTTCAACACTACCTTAGAAGCTATGTGTGTTCTAGAGAATACGTTACCTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAACACTACCTTAGAAGCTATGTGTGTTCTAGAGAATACGTTACCTG  741

seq1  AACTATGGGCCCTGGCACAGATCTTTGTAGCCCTAACCTGTTGATGGTAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATGGGCCCTGGCACAGATCTTTGTAGCCCTAACCTGTTGATGGTAG  791

seq1  CTCATTCTTCTAGGCAGTCATATCTTCTGCAGTAGCCCACTCCAGATGGT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTCTTCTAGGCAGTCATATCTTCTGCAGTAGCCCACTCCAGATGGT  841

seq1  CAGGGATGGATCTTATGAACTTACTTTGCAATTCCAAACACAAAAAGCTC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGATGGATCTTATGAACTTACTTTGCAATTCCAAACACAAAAAGCTC  891

seq1  TTTATCATCTCTGCCCTTGTGAATGTTTCCATTTTCAAGTAAAGAAACCA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCATCTCTGCCCTTGTGAATGTTTCCATTTTCAAGTAAAGAAACCA  941

seq1  CTTGGGCTTCAAGCTCTGCCATGCTGTCCCTCCATGATGATCATAGCCCT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGCTTCAAGCTCTGCCATGCTGTCCCTCCATGATGATCATAGCCCT  991

seq1  GCTTGATTTGAGGATGCAGACTTTTCTGCACTTGCACTGCTCATGGTTCT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGATTTGAGGATGCAGACTTTTCTGCACTTGCACTGCTCATGGTTCT  1041

seq1  AATTGCGTGGCACAGATAGCATTGGAGCTCTTCATTAAATTTCCATCACA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCGTGGCACAGATAGCATTGGAGCTCTTCATTAAATTTCCATCACA  1091

seq1  CTGTCTCATTCAGGAGGTTCTGGGATGTGCCTTAGGCATTTTATATCTCC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCATTCAGGAGGTTCTGGGATGTGCCTTAGGCATTTTATATCTCC  1141

seq1  TCTTCTGGACTGGAAGGAATTC  1169
      ||||||||||||||||||||||
seq2  TCTTCTGGACTGGAAGGAATTC  1163


seq1: chr6_18865541_18866568
seq2: B6Ng01-215F17.g_66_1095

seq1  GAATTCTATACAATGAGGAAGTATAATGTAGCAATTTCTTTTTAGTTCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATACAATGAGGAAGTATAATGTAGCAATTTCTTTTTAGTTCCA  50

seq1  TGGATCTTGAGGTAGAATTTCTTAAGGGGGAATATGTTAGGTTAAATAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCTTGAGGTAGAATTTCTTAAGGGGGAATATGTTAGGTTAAATAGA  100

seq1  AATTATTACACACTTAGTTGCTCATGTAGGTGTTTTATGCGAATACATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTACACACTTAGTTGCTCATGTAGGTGTTTTATGCGAATACATTT  150

seq1  TTATATGCAAAATTATTGTTCAAATGGCATCAGGGAACAATTTCAAATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATGCAAAATTATTGTTCAAATGGCATCAGGGAACAATTTCAAATGA  200

seq1  ATTAATAGGTTTTAAAAATTAGTTTGGAAAGGTGGACATTTGAAAGTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATAGGTTTTAAAAATTAGTTTGGAAAGGTGGACATTTGAAAGTTTT  250

seq1  AATGTAAATCAAAATAAAGTTTTAAAATTTAAAATATCAGCATTTTGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAAATCAAAATAAAGTTTTAAAATTTAAAATATCAGCATTTTGAAG  300

seq1  TAATGAGCTTAGATGTCAGCAAGTCACATTTCTTCAAAAGCCAATATTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAGCTTAGATGTCAGCAAGTCACATTTCTTCAAAAGCCAATATTTT  350

seq1  AAAAGATGTACCCAAACAGATTTTCCTGTGTTTAAAGACAATAAACTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATGTACCCAAACAGATTTTCCTGTGTTTAAAGACAATAAACTTTA  400

seq1  TATCTAACACACTTAATTTGCTAATAAAAATAACCTATTCATTCTAAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTAACACACTTAATTTGCTAATAAAAATAACCTATTCATTCTAAAGA  450

seq1  AATTTCTAAAAGGCATACTATAAAAGAGCACATTTTTATTTCCCAAGGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTAAAAGGCATACTATAAAAGAGCACATTTTTATTTCCCAAGGGG  500

seq1  CTTCATTCCAAAAGATAAGCAAACTCCCAATCTAAGCCTTCTTTATGACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATTCCAAAAGATAAGCAAACTCCCAATCTAAGCCTTCTTTATGACT  550

seq1  CTGTTAAGTACATCTATTACATTACATCTTGCTATAAAAGCCCTTCACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTAAGTACATCTATTACATTACATCTTGCTATAAAAGCCCTTCACAT  600

seq1  GGAAGGCAGCAGAAATGAGATCTGTGTTCTGCATGCCAAATCAGCCCAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGCAGCAGAAATGAGATCTGTGTTCTGCATGCCAAATCAGCCCAAT  650

seq1  GTTTCCCAGCTGTGTTGGCGTACAGCTCTGGGCTCTCCCTTTAGAGTCCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCCAGCTGTGTTGGCGTACAGCTCTGGGCTCTCCCTTTAGAGTCCG  700

seq1  TGTAATGAGTTATAATTGATGGTGGTGATGGGGATGACAAGAC-TCGGAG  749
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TGTAATGAGTTATAATTGATGGTGGTGATGGGGATGACAAGACTTCGGAG  750

seq1  CGAGTGTTTTCATGTAATCTCA-TTCACTAGAGTTGTGAGCAATCACTGT  798
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CGAGTGTTTTCATGTAATCTCATTTCACTAGAGTTGTGAGCAATCACTGT  800

seq1  GTCAGTCTTAAATTCTTACAATGAATGGGATGCACTTGAAGCAATAAAAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GTCAGTCTTAAATTCTTACAATGAATGGGATGCACTTGAAGCAATAAAA-  849

seq1  TGATGCTACAAAGAATTTACTAATAAACTTGCTCAGGAAAATCTAAGTTA  898
      ||||||||| |||| |||||| |  ||||||||||||||||||| || ||
seq2  TGATGCTAC-AAGATTTTACTTAATAACTTGCTCAGGAAAATCT-AGGTA  897

seq1  CACACTGTAGAATTCAGCTAATGAGTGCTGCCTCTAATATGACT--GGAA  946
      ||||||||||||||||||||||||||||||||||| | ||||||  | ||
seq2  CACACTGTAGAATTCAGCTAATGAGTGCTGCCTCTTACATGACTTGGTAA  947

seq1  GATAAGTGCGTGCTAACCAGAGTTTTTAGAAACCATAAGAAAGAAAATTT  996
      ||||||||||||||||||||||||||||||| |  |||||||  ||||||
seq2  GATAAGTGCGTGCTAACCAGAGTTTTTAGAACCATTAAGAAAAGAAATTT  997

seq1  TGTAGCATAATTGGAGTTT-AGGGCTTCTGAGA  1028
      |||| |||||||||||||| |||||||||||||
seq2  TGTATCATAATTGGAGTTTAAGGGCTTCTGAGA  1030


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