BAC Information

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BAC

Clone NameB6Ng01-215P12
Chromosome6 (Build37)
Map Location 126,030,909 - 126,169,241
singlet/doubletdoublet
Overlap geneNtf3, LOC100043565
Upstream geneGpr92, Chd4, Nol1, A930037G23Rik, Gapdh, Ncapd2, Mrpl51, Vamp1, Tapbpl, Cd27, 4930417O13Rik, Tuba3a, Ltbr, Scnn1a, Tnfrsf1a, Plekhg6, Cd9, Vwf, Tmem16b
Downstream geneLOC667427, LOC100043567, Kcna5, Kcna1, Kcna6, LOC667463, Ndufa9, Akap3, Dyrk4, Rad51ap1, D6Wsu163e, LOC667473, LOC624256, Fgf6, Fgf23, 9630033F20Rik, Ccnd2, Tpi-rs11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-215P12.bB6Ng01-215P12.g
ACCGA032785GA032786
length1,1311,119
definitionB6Ng01-215P12.b B6Ng01-215P12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,030,909 - 126,032,028)(126,168,122 - 126,169,241)
sequence
gaattccagccacagaatgcagagagagctggctaggaagaatagctcta
tctggaagtgctaggtttgacttgtctcaaagaataatgtggaaaagtaa
cagggcacactccgggacatcaaccgcgggcctacacatggacgagtaat
gaagggtgcggtctaccatttccatacctacatttatgtaaatcatgtat
gcatgcatgcacattccaaacatgggaaaataatgctaaagctgtcagca
aagtgattttatttgctgttgttttgttttaagacagaatctcacgatga
agcctcgctgggtcagcctcaaactcttgatccccctgtctaagcctctt
aagtttgagcgtggggcttaagggagtgtgccacatgaccagcaagcagc
acagtgtctctctgcagccatgattcctaggacgactttgccaaccagaa
gccatgaaacacattacccgtgactcagtttccttgatgacaaaaaagga
aggaactgtaagacccacctctcaagaacaaagaaggggtggtattttag
tcacttctctcagtgctgtgataaaaatcctgaatcaggcaactaaggaa
ggaagggtttactttggtttaccatttgagggcacagctcaccccagcaa
ggaaggcgtggtgtcagagctgtgaagcaggtggtcctactgcatctgaa
gtcaggaagcagagcctgatgaaagtctttgcttagctcagtttctcctc
tttattcagtctggaacctgagcccatggaatggtactgcctacatttgg
ggtggatcaccccacatcaaagaacccaaggtagacattccctcgaagac
agagccagaggttcgtcttcaacatgattcccaaatttgtcttggttgga
aatcaatattaaatcctcacagaagaggcaactactccggagaaactgtc
cactttcaatttatattggcctgccccacaagggatgtagtagagtttaa
tttgctacttttcctgaattctcttacaatttctggttcttgacctagcc
ttaatggatggagccatcctctccagccctgccttctgaatctcaaaggg
atgctaagaaattcatctcaggttatttttt
gaattccagaggagcgaaacatgtgtgaaggcttatgacagcactgcgtg
tttgagaaactgcaaacattacaaatactgtggctaaccagaggggagct
ggaggaggggctgggaaacatctcaggagtattggcagtgtgcacagtca
gtctctcaaagaccttgtggctactcagggaagggtgggcttcgacctgc
ggcaatggacaaagcttttaattatcttttgttggtgttattttactgca
gaagccatgtagaatttcaggtggctgatgtcaatagcatgaagaaaaca
tatggaagaaaattgtagaaagagtctatgtcaaaggcagacacagtaag
aacagaggtcagcattcttgctgccccatcttcttcagtgttcctggacc
ttgaagagagtgaattagatgtcttgtttaagaattgtgtgtgattgtat
ttaatttttccataaacctaataaaaactcaaaatacaaagtctaagatt
tttaaacacatgtacacacacacacacacacacacacacacacacacaca
ccacacacacacacacacacacgcacacacacacacgtgcacgcgcatat
gcatgcacacatgcacacacatgcacttacacacatttctggcttttaca
taaacttttccagtccttgtccaagtaaatggaagtttaggccaggaatt
tagcttcacatgagttgtctgcatgtaaaaacttctcttcagcacaggaa
gaagtgacctctaaccctgccaagttacatcagagagggagaggaacgag
tcccagagtgatgaatggaggccagtgaagagacttatacaaatttctct
actttaaaaaactgacaagctgactcccagagaggcaagtaattcttaat
cgcctgtttgattagagttgagaacagataaggagcacaatggcgtgccc
agagagcaggacatgaataaccacaagtgacaggtgtaatgtaatgccta
gtacattggtgcttggtgctacaagacagcattcccgagtaagcccggtc
tccatcatttgatttcaggcttgcagtggacccgaagcaatcacctcttt
ctggaaaacgatagagcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_126030909_126032028
seq2: B6Ng01-215P12.b_46_1176

seq1  GAATTCCAGCCACAGAATGCAGAGAGAGCTGGCTAGGAAGAATAGCTCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCCACAGAATGCAGAGAGAGCTGGCTAGGAAGAATAGCTCTA  50

seq1  TCTGGAAGTGCTAGGTTTGACTTGTCTCAAAGAATAATGTGGAAAAGTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAAGTGCTAGGTTTGACTTGTCTCAAAGAATAATGTGGAAAAGTAA  100

seq1  CAGGGCACACTCCGGGACATCAACCGCGGGCCTACACATGGACGAGTAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCACACTCCGGGACATCAACCGCGGGCCTACACATGGACGAGTAAT  150

seq1  GAAGGGTGCGGTCTACCATTTCCATACCTACATTTATGTAAATCATGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGTGCGGTCTACCATTTCCATACCTACATTTATGTAAATCATGTAT  200

seq1  GCATGCATGCACATTCCAAACATGGGAAAATAATGCTAAAGCTGTCAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCATGCACATTCCAAACATGGGAAAATAATGCTAAAGCTGTCAGCA  250

seq1  AAGTGATTTTATTTGCTGTTGTTTTGTTTTAAGACAGAATCTCACGATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGATTTTATTTGCTGTTGTTTTGTTTTAAGACAGAATCTCACGATGA  300

seq1  AGCCTCGCTGGGTCAGCCTCAAACTCTTGATCCCCCTGTCTAAGCCTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCGCTGGGTCAGCCTCAAACTCTTGATCCCCCTGTCTAAGCCTCTT  350

seq1  AAGTTTGAGCGTGGGGCTTAAGGGAGTGTGCCACATGACCAGCAAGCAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTGAGCGTGGGGCTTAAGGGAGTGTGCCACATGACCAGCAAGCAGC  400

seq1  ACAGTGTCTCTCTGCAGCCATGATTCCTAGGACGACTTTGCCAACCAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGTCTCTCTGCAGCCATGATTCCTAGGACGACTTTGCCAACCAGAA  450

seq1  GCCATGAAACACATTACCCGTGACTCAGTTTCCTTGATGACAAAAAAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGAAACACATTACCCGTGACTCAGTTTCCTTGATGACAAAAAAGGA  500

seq1  AGGAACTGTAAGACCCACCTCTCAAGAACAAAGAAGGGGTGGTATTTTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACTGTAAGACCCACCTCTCAAGAACAAAGAAGGGGTGGTATTTTAG  550

seq1  TCACTTCTCTCAGTGCTGTGATAAAAATCCTGAATCAGGCAACTAAGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTCTCTCAGTGCTGTGATAAAAATCCTGAATCAGGCAACTAAGGAA  600

seq1  GGAAGGGTTTACTTTGGTTTACCATTTGAGGGCACAGCTCACCCCAGCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGGTTTACTTTGGTTTACCATTTGAGGGCACAGCTCACCCCAGCAA  650

seq1  GGAAGGCGTGGTGTCAGAGCTGTGAAGCAGGTGGTCCTACTGCATCTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGCGTGGTGTCAGAGCTGTGAAGCAGGTGGTCCTACTGCATCTGAA  700

seq1  GTCAGGAAGCAGAGCCTGATGAAAGTCTTTGCTTAGCTCAGTTTCTCCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGAAGCAGAGCCTGATGAAAGTCTTTGCTTAGCTCAGTTTCTCCTC  750

seq1  TTTATTCAGTCTGGAACCTGAGCCCATGGAATGGTACTGCCTACATTTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCAGTCTGGAACCTGAGCCCATGGAATGGTACTGCCTACATTTGG  800

seq1  GGTGGATCACCCCACATCAAAGAACCCAAGGTAGACATTCCCTCGAAGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGATCACCCCACATCAAAGAACCCAAGGTAGACATTCCCTCGAAGAC  850

seq1  AGAGCCAGAGGTTCGTCTTCAACATGATT-CCAAAATTGTC-TGGTTGGA  898
      ||||||||||||||||||||||||||||| ||||| ||||| ||||||||
seq2  AGAGCCAGAGGTTCGTCTTCAACATGATTCCCAAATTTGTCTTGGTTGGA  900

seq1  AATCAATATT-AATCCTCACAGAAGGAGGCAACTACTCGGAGGAAACTGT  947
      |||||||||| ||||||||||||| ||||||||||||| |  ||||||||
seq2  AATCAATATTAAATCCTCACAGAA-GAGGCAACTACTCCGGAGAAACTGT  949

seq1  CCAC-TTCAAATTATAT--GGCTG-CCCAC-AGGGATGTAGTAGAGTTTA  992
      |||| ||||| ||||||  | ||| ||||| |||||||||||||||||||
seq2  CCACTTTCAATTTATATTGGCCTGCCCCACAAGGGATGTAGTAGAGTTTA  999

seq1  A-TTGGTACTTT--CTGAATTCTCTTAC-ATTTTTGGTTCTGAACCTAGC  1038
      | ||| ||||||  |||||||||||||| |||| |||||||  |||||||
seq2  ATTTGCTACTTTTCCTGAATTCTCTTACAATTTCTGGTTCTTGACCTAGC  1049

seq1  CTTTAATGGAT-GAGCCAT-CTCTCCAG-CCTGCTTCCTGAATTCTCAAA  1085
      | ||||||||| ||||||| |||||||| ||||| | ||||| |||||||
seq2  C-TTAATGGATGGAGCCATCCTCTCCAGCCCTGCCTTCTGAA-TCTCAAA  1097

seq1  GTGATGCTATAGAATCTATCTCATGGTTATTTTTT  1120
      | |||||||   |||  |||||| |||||||||||
seq2  GGGATGCTAAGAAATTCATCTCA-GGTTATTTTTT  1131

seq1: chr6_126168122_126169241
seq2: B6Ng01-215P12.g_66_1184 (reverse)

seq1  CTGCTCTTCTCTGTTTTCAG-AAGA-GTGATTGCTTTTGGGTCCACTTAC  48
      |||||| | ||  ||| ||| |||| |||||||| || |||||||||   
seq2  CTGCTC-TATCGTTTTCCAGAAAGAGGTGATTGC-TTCGGGTCCACTGCA  48

seq1  AGCCTG-AATCAAATGATGGAGACCGGGCTTAACTCTGGAATTGCTGTCC  97
      |||||| |||||||||||||||||||||||| |||| |||| |||||| |
seq2  AGCCTGAAATCAAATGATGGAGACCGGGCTT-ACTCGGGAA-TGCTGT-C  95

seq1  TTGTAGCCACAAGCACCATTGTACTA-GCATTACATTACACCTGTCACTT  146
      |||||||  ||||||||| ||||||| |||||||||||||||||||||||
seq2  TTGTAGCACCAAGCACCAATGTACTAGGCATTACATTACACCTGTCACTT  145

seq1  GTGGTTACTCATGTCCTGCTCTCTGGGCACGCCATTGCTGCTCCTTATCT  196
      ||||||| ||||||||||||||||||||||||||||| ||||||||||||
seq2  GTGGTTATTCATGTCCTGCTCTCTGGGCACGCCATTG-TGCTCCTTATCT  194

seq1  GTTCTCAACTCCTAATC-AACAGGCGATTATGAATTACTTGCCTCTCTGG  245
      |||||||||| |||||| |||||||||||| |||||||||||||||||||
seq2  GTTCTCAACT-CTAATCAAACAGGCGATTAAGAATTACTTGCCTCTCTGG  243

seq1  GAGTCAGCTTGTCAG-TTTTTAAAGTAGAGAAATTTGTATAAAGTCTCTT  294
      ||||||||||||||| |||||||||||||||||||||||| |||||||||
seq2  GAGTCAGCTTGTCAGTTTTTTAAAGTAGAGAAATTTGTAT-AAGTCTCTT  292

seq1  CACTGGCCT-CATTCATCACTCTGGGACTCGTTCCTCTCCCTCTCTGATG  343
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGCCTCCATTCATCACTCTGGGACTCGTTCCTCTCCCTCTCTGATG  342

seq1  TAACTTGGCAGGGTTAGAGGTCACTTCTTCCTGTGCTGAAGAGAAGTTTT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTGGCAGGGTTAGAGGTCACTTCTTCCTGTGCTGAAGAGAAGTTTT  392

seq1  TACATGCAGACAACTCATGTGAAGCTAAATTCCTGGCCTAAACTTCCATT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGCAGACAACTCATGTGAAGCTAAATTCCTGGCCTAAACTTCCATT  442

seq1  TACTTGGACAAGGACTGGAAAAGTTTATGTAAAAGCCAGAAATGTGTGTA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGGACAAGGACTGGAAAAGTTTATGTAAAAGCCAGAAATGTGTGTA  492

seq1  AGTGCATGTGTGTGCATGTGTGCATGCATATGCGCGTGCACGTGTGTGTG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCATGTGTGTGCATGTGTGCATGCATATGCGCGTGCACGTGTGTGTG  542

seq1  TGTGCGTGTGTGTGTGTGTGTGTGTGGTGTGTGTGTGTGTGTGTGTGTGT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCGTGTGTGTGTGTGTGTGTGTGGTGTGTGTGTGTGTGTGTGTGTGT  592

seq1  GTGTGTGTGTGTGTACATGTGTTTAAAAATCTTAGACTTTGTATTTTGAG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTACATGTGTTTAAAAATCTTAGACTTTGTATTTTGAG  642

seq1  TTTTTATTAGGTTTATGGAAAAATTAAATACAATCACACACAATTCTTAA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTAGGTTTATGGAAAAATTAAATACAATCACACACAATTCTTAA  692

seq1  ACAAGACATCTAATTCACTCTCTTCAAGGTCCAGGAACACTGAAGAAGAT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGACATCTAATTCACTCTCTTCAAGGTCCAGGAACACTGAAGAAGAT  742

seq1  GGGGCAGCAAGAATGCTGACCTCTGTTCTTACTGTGTCTGCCTTTGACAT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAGCAAGAATGCTGACCTCTGTTCTTACTGTGTCTGCCTTTGACAT  792

seq1  AGACTCTTTCTACAATTTTCTTCCATATGTTTTCTTCATGCTATTGACAT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCTTTCTACAATTTTCTTCCATATGTTTTCTTCATGCTATTGACAT  842

seq1  CAGCCACCTGAAATTCTACATGGCTTCTGCAGTAAAATAACACCAACAAA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCACCTGAAATTCTACATGGCTTCTGCAGTAAAATAACACCAACAAA  892

seq1  AGATAATTAAAAGCTTTGTCCATTGCCGCAGGTCGAAGCCCACCCTTCCC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAATTAAAAGCTTTGTCCATTGCCGCAGGTCGAAGCCCACCCTTCCC  942

seq1  TGAGTAGCCACAAGGTCTTTGAGAGACTGACTGTGCACACTGCCAATACT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTAGCCACAAGGTCTTTGAGAGACTGACTGTGCACACTGCCAATACT  992

seq1  CCTGAGATGTTTCCCAGCCCCTCCTCCAGCTCCCCTCTGGTTAGCCACAG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGATGTTTCCCAGCCCCTCCTCCAGCTCCCCTCTGGTTAGCCACAG  1042

seq1  TATTTGTAATGTTTGCAGTTTCTCAAACACGCAGTGCTGTCATAAGCCTT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTAATGTTTGCAGTTTCTCAAACACGCAGTGCTGTCATAAGCCTT  1092

seq1  CACACATGTTTCGCTCCTCTGGAATTC  1120
      |||||||||||||||||||||||||||
seq2  CACACATGTTTCGCTCCTCTGGAATTC  1119