BAC Information

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BAC

Clone NameB6Ng01-216F05
Chromosome6 (Build37)
Map Location 130,136,348 - 130,333,591
singlet/doubletdoublet
Overlap geneLOC100038894, Klra9, Klra7, LOC100038898, Klra12, Klra10, Klra13, Klra3, Klra1, LOC100038902, LOC100038903
Upstream geneClec2d, Cd69, 4922502D21Rik, Clec12a, 4933425B16Rik, Clec1b, Clec9a, Clec1a, Clec7a, Olr1, D630042F21Rik, Gabarapl1, Klre1, Klrd1, Klrk1, Klrc3, Klrc2, Klrc1, LOC640755, Klri1, Klri2, Gm156, Klra17, Klra5, LOC667764, Klra6, LOC100038893, LOC100038895, Klra4, LOC667769, LOC100038897, Klra8, EG654449
Downstream geneLOC625436, EG625473, LOC640779, LOC667793, EG667798, EG625558, LOC625566, EG636947, LOC625628, EG625648, LOC667830, EG434094, Klra2, LOC434095, 2010012C16Rik, Styk1, Csda
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-216F05.bB6Ng01-216F05.g
ACCGA033047GA033048
length3221,145
definitionB6Ng01-216F05.b B6Ng01-216F05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(130,136,348 - 130,136,669)(130,332,434 - 130,333,591)
sequence
tagatatgcagtaattcgttgtgcccacacttgtctatacacgtgtatgc
acttagcattgtgccaagatctgtgataagtgatattaccttaacagaaa
taagagacatcaaatgccaggtggggtggcaaatgcctttattctaagcc
ctttggaggcacaggcaggcagatttctgagttcgggtccagcctggtcg
agaaagtgagttccagtacagctaaggctacacagagaaaccctgtctca
aaaaaccaaagagagagatagagatgatagagagagagagagagagagag
agagagagagagagagagagag
gaattctcatcacaaacacatgtacaaaactcatagaagaaaaaaaaatc
atatcatctcatctctaaaaaaataactgtgagtattttcatgccaatgg
atagaatgtcatctaataatctttattagagttcttcaaatgtatatttt
cttgaatcccatgacttcatgcataaaataattttttagtatgttctaaa
gaatatcccatgtagtttttaaactaacaacaacaaaatattatagtaca
actgggatggtcctcagtaatagatgatcaaaattatttatgctgcacat
aagtaattaatacttatatgactttaaattattgagatcaacatatataa
aatgaagaaatgcgtattatttatttattaacctagagcatattgctgtc
atgatatacagctataattctaagacaaaaatgtatgaaaacccgaggaa
tatgattgtgaggtctacctgtgttacatagtaaaataaatcatctgtct
caaaaacaacaacagcaacaaacaaaaaaacaaaccagaacaaaacaaaa
ccaagtcctgggtctgtagctcaggggaagaatatttactgagcatgttc
attgtcttagatttgatttcccatcaccgtgacaacatcagcattaaaat
actccatacagaattacatcaatgttcataggaaatattatatatgattt
aaaaatctagaaaaatgtaaaggaagacttcaccacacttagctgcaact
agcataatttcaaaatgaagaaataacttaaaaattagtaacataatagt
aaatttccaacagtctattacaaaactaggagcatcagtgccacattttt
ccaagttgttttgctaaggacagtgtttttgctctcttctgcaggagttt
tcatcttctcttcttaaaataatcagtatggacatttgttttgcagcatc
tggcacaatacgttacttctctccttgttctgaaggtcaggtttcattaa
gcagtttcctcttttgctttgatgacgaggaggagcataaatcatgaggt
gagtatcccttcatggaatttagtctaccgtttatttgagaaccttagga
tactacccagaaaaagcacctttttcctccacgaaccacttcttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_130136348_130136669
seq2: B6Ng01-216F05.b_50_371

seq1  TAGATATGCAGTAATTCGTTGTGCCCACACTTGTCTATACACGTGTATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATATGCAGTAATTCGTTGTGCCCACACTTGTCTATACACGTGTATGC  50

seq1  ACTTAGCATTGTGCCAAGATCTGTGATAAGTGATATTACCTTAACAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGCATTGTGCCAAGATCTGTGATAAGTGATATTACCTTAACAGAAA  100

seq1  TAAGAGACATCAAATGCCAGGTGGGGTGGCAAATGCCTTTATTCTAAGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGACATCAAATGCCAGGTGGGGTGGCAAATGCCTTTATTCTAAGCC  150

seq1  CTTTGGAGGCACAGGCAGGCAGATTTCTGAGTTCGGGTCCAGCCTGGTCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGAGGCACAGGCAGGCAGATTTCTGAGTTCGGGTCCAGCCTGGTCG  200

seq1  AGAAAGTGAGTTCCAGTACAGCTAAGGCTACACAGAGAAACCCTGTCTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTGAGTTCCAGTACAGCTAAGGCTACACAGAGAAACCCTGTCTCA  250

seq1  AAAAACCAAAGAGAGAGATAGAGATGATAGAGAGAGAGAGAGAGAGAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCAAAGAGAGAGATAGAGATGATAGAGAGAGAGAGAGAGAGAGAG  300

seq1  AGAGAGAGAGAGAGAGAGAGAG  322
      ||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAG  322

seq1: chr6_130332434_130333591
seq2: B6Ng01-216F05.g_67_1211 (reverse)

seq1  CAAGAAGTGGTTCTGGTGGAGGAAAAAGTTGGCTTTTTCTGGTTGATATC  50
      |||||||||||||  ||||||||||||| | ||||||||||| |  ||| 
seq2  CAAGAAGTGGTTC--GTGGAGGAAAAAGGT-GCTTTTTCTGGGTAGTAT-  46

seq1  CCCTAAGTGTCTCCAAAATAAACGGTAGAACTAAATTTCCACTGAGAGAT  100
       ||||||  ||||  ||||||||||||| |||||| |||||   || |||
seq2  -CCTAAGGTTCTC--AAATAAACGGTAG-ACTAAA-TTCCATGAAGGGAT  91

seq1  ACTCAACCTCATGATTTTATGCTCCTCCTCGTCATCAAAGCAAAAAGAGG  150
      |||| ||||||||| |||||||||||||||||||||||||| ||||||||
seq2  ACTC-ACCTCATGA-TTTATGCTCCTCCTCGTCATCAAAGC-AAAAGAGG  138

seq1  AAACTGCTTAATGAAACCTGACCCTCAGAACAAAGGAGAGAAGTAACGTA  200
      ||||||||||||||||||||||| ||||||| ||||||||||||||||||
seq2  AAACTGCTTAATGAAACCTGACCTTCAGAAC-AAGGAGAGAAGTAACGTA  187

seq1  TTGTGCCAGATGCTGCAAAACAAATGTCCATAACTGATATTTTTAAGAAG  250
      ||||||||||||||||||||||||||||||| ||||||  ||||||||| 
seq2  TTGTGCCAGATGCTGCAAAACAAATGTCCAT-ACTGATTATTTTAAGAA-  235

seq1  GAGAAGATGAAAACTCCTGCAG-AGAGAGCAAAAACACTGTCCTTAGCAA  299
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GAGAAGATGAAAACTCCTGCAGAAGAGAGCAAAAACACTGTCCTTAGCAA  285

seq1  AACAACTTGGAAAAATGTGGCACTGATGCTCCTAGTTTTGTAATAGACTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACTTGGAAAAATGTGGCACTGATGCTCCTAGTTTTGTAATAGACTG  335

seq1  TTGGAAATTTACTATTATGTTACTAATTTTTAAGTTATTTCTTCATTTTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAATTTACTATTATGTTACTAATTTTTAAGTTATTTCTTCATTTTG  385

seq1  -AATTATGCTAGTTGCAGCTAAGTGTGGTGAAGTCTTCCTTTACATTTTT  448
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATGCTAGTTGCAGCTAAGTGTGGTGAAGTCTTCCTTTACATTTTT  435

seq1  CTAGATTTTTAAATCATATATAATATTTCCTATGAACATTGATGTAATTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATTTTTAAATCATATATAATATTTCCTATGAACATTGATGTAATTC  485

seq1  TGTATGGAGTATTTTAATGCTGATGTTGTCACGGTGATGGGAAATCAAAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGGAGTATTTTAATGCTGATGTTGTCACGGTGATGGGAAATCAAAT  535

seq1  CTAAGACAATGAACATGCTCAGTAAATATTCTTCCCCTGAGCTACAGACC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGACAATGAACATGCTCAGTAAATATTCTTCCCCTGAGCTACAGACC  585

seq1  CAGGACTTGGTTTTGTTTTGTTCTGGTTTGTTTTTTTGTTTGTTGCTGTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACTTGGTTTTGTTTTGTTCTGGTTTGTTTTTTTGTTTGTTGCTGTT  635

seq1  GTTGTTTTTGAGACAGATGATTTATTTTACTATGTAACACAGGTAGACCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTTTTGAGACAGATGATTTATTTTACTATGTAACACAGGTAGACCT  685

seq1  CACAATCATATTCCTCGGGTTTTCATACATTTTTGTCTTAGAATTATAGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATCATATTCCTCGGGTTTTCATACATTTTTGTCTTAGAATTATAGC  735

seq1  TGTATATCATGACAGCAATATGCTCTAGGTTAATAAATAAATAATACGCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATCATGACAGCAATATGCTCTAGGTTAATAAATAAATAATACGCA  785

seq1  TTTCTTCATTTTATATATGTTGATCTCAATAATTTAAAGTCATATAAGTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCATTTTATATATGTTGATCTCAATAATTTAAAGTCATATAAGTA  835

seq1  TTAATTACTTATGTGCAGCATAAATAATTTTGATCATCTATTACTGAGGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTACTTATGTGCAGCATAAATAATTTTGATCATCTATTACTGAGGA  885

seq1  CCATCCCAGTTGTACTATAATATTTTGTTGTTGTTAGTTTAAAAACTACA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCCAGTTGTACTATAATATTTTGTTGTTGTTAGTTTAAAAACTACA  935

seq1  TGGGATATTCTTTAGAACATACTAAAAAATTATTTTATGCATGAAGTCAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATATTCTTTAGAACATACTAAAAAATTATTTTATGCATGAAGTCAT  985

seq1  GGGATTCAAGAAAATATACATTTGAAGAACTCTAATAAAGATTATTAGAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTCAAGAAAATATACATTTGAAGAACTCTAATAAAGATTATTAGAT  1035

seq1  GACATTCTATCCATTGGCATGAAAATACTCACAGTTATTTTTTTAGAGAT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTCTATCCATTGGCATGAAAATACTCACAGTTATTTTTTTAGAGAT  1085

seq1  GAGATGATATGATTTTTTTTTCTTCTATGAGTTTTGTACATGTGTTTGTG  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGATATGATTTTTTTTTCTTCTATGAGTTTTGTACATGTGTTTGTG  1135

seq1  ATGAGAATTC  1158
      ||||||||||
seq2  ATGAGAATTC  1145