BAC Information

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BAC

Clone NameB6Ng01-216L12
Chromosome6 (Build37)
Map Location 133,851,830 - 133,975,911
singlet/doubletdoublet
Overlap geneLOC668063
Upstream geneTas2r142-ps5, Tas2r125, Tas2r146-ps1, Tas2r129, Tas2r131, Tas2r109, EG667992, LOC100043634, Tas2r140, LOC668002, Tas2r141-ps4, 2700089E24Rik, LOC630618, 5530400C23Rik, EG545884, EG626372, LOC100043649, LOC100043653, EG545886, LOC622962, Kap, LOC100043655, LOC100043656
Downstream geneEtv6, LOC100043660, Bcl2l14, Lrp6, Mansc1, Loh12cr1, LOC100043884, Dusp16, Crebl2, Gpr19, Cdkn1b, 1190002F15Rik, Apold1, Ddx47
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-216L12.bB6Ng01-216L12.g
ACCGA033333GA033334
length1,080704
definitionB6Ng01-216L12.b B6Ng01-216L12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(133,974,811 - 133,975,911)(133,851,830 - 133,852,521)
sequence
gaattctgggaatgtagttcacgttgaccaggttgtcctattacacaggc
atttcatacattaacctgcattccatcaaactactctctggcagttctaa
tcttagaacttttcgggacttctgttgcatcttttccaactactcctcac
ggtcttccatctgcttccccacagcttcctcatctcccttagttacttac
gacgccacctattttcgacctcggtgaacaaagttcaagacaaattttga
cagactgctttcatgggtgcgatgcagatggcccgtctcccaatctatct
gctctactgaggttcctcttgatctctgcaagcatcttctagaggcagtt
ccttcccaacctggattattgctatggcccttcttctactgaacttctat
aggactcggcccatgggaactagaggaacctgtaacttgtaagtgtcaga
acttgtggaacttgtaagtttcagagcctaatgcctaagaagctggagtt
ccaaggcctgagagcaaagattgtccaagctcaagaagaaacttaatgtg
gccttcctctattctgccagtctatacagtcccgtgaggtgccctcattg
gtgggggctaggttgtctttcctcagactactaatgatttgttgaaataa
cctcgcaggtatatacagaaacaatgtcttaccagcctctgagcacggcc
tgggttatgctggttgacatgaaaaaattaatcatcacaaacctcttcat
caccccacatttccacctttaagtcttgtcttctgttactcaaggcttca
cataaacatgagactgtcttatatcaagtaatacctgcaatcacctcttt
cacaaatgcattttacattactataaatagaagccatccaaagataggta
ttaaattgctggagtaacttcatgatgcagagctgctcagctacccacta
ttataactgggagacggagagaccctccatcatcatgctttaggacatgt
gtatctaataacatctctctatagtagcctttatgctgccataaactagg
atcttcattcatgaggtgggatagggggtt
gaattcccaaggggcacatggaagccagacagtagtggatatgttcatta
cctttattgccagtggcttctctacataaaagtgtccaaaaaaacttagt
gttttacacccttcatatttattaataactaaactagcatgtgagagttt
ttaagctcctgatgttagcctagggaacacacacacacctgtttcggggg
ggcatgcagaaggaacaacaaatggtgttagaactcatggaatgtggccc
aagggtcactacagtcacatgggtgaacctcagtgtggcacagccccgag
gaccatgtgtcctgaggacttcatgctgttatggagatctgttttgcttg
ctgtgctcacgtccttctcaacctaaaagttatatgaaaactctaagtgg
gcttccagcccctcactggacagcatctctggcacttacaatgatagtgc
ttgatctctttcaggcatcgttgccagaccagactaatgattctgtcacc
tgggaaagaacatagagacatagattgtcagcaacatttggaaatgtcag
aaaacatttggaaaaataaaatcattagtgaagctaggttgggatatttt
tacagctagctctgatgtagagaatcttaggaaacaatttgaagttcgga
aagacacacacttactagttaaattagggaccttttatagtcagggaaca
agaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_133974811_133975911
seq2: B6Ng01-216L12.b_40_1118 (reverse)

seq1  ACCCCACTATCCCACCTTCCATTGAATAGAAGAATCCTAGTTTAATGGCA  50
      ||||| |||||||||||  || ||||| |||| |||||||||| ||||||
seq2  ACCCC-CTATCCCACCT--CA-TGAAT-GAAG-ATCCTAGTTT-ATGGCA  43

seq1  GCATTAAAGGCTACTATAGAAGAGATGTTAATTTAGATAACACATGTCTT  100
      ||| ||||||||||||||| ||||||||||  |||||| ||||||||| |
seq2  GCA-TAAAGGCTACTATAG-AGAGATGTTA--TTAGAT-ACACATGTCCT  88

seq1  AAAGCATGGATGATGGGAGTGTCTTCTCCGGTCTCCCAGGTTATAATTAG  150
      ||||||| |||||| |||| ||| ||||| |||||||| ||||||| |||
seq2  AAAGCAT-GATGAT-GGAGGGTC-TCTCC-GTCTCCCA-GTTATAA-TAG  132

seq1  TGGGTAGCTGAGCAGCTCTTGCATCATGAAGTTACTCCAGCATTTTAATA  200
      |||||||||||||||||| ||||||||||||||||||||||| |||||||
seq2  TGGGTAGCTGAGCAGCTC-TGCATCATGAAGTTACTCCAGCAATTTAATA  181

seq1  CCTTATCTTTTGGATGGCTTCTATTTATAGTAATGTAAAATGCATTTGTG  250
      || |||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CC-TATC-TTTGGATGGCTTCTATTTATAGTAATGTAAAATGCATTTGTG  229

seq1  AAAGAGGTGATTTGCAGGTATTACTTGATATAAGACAGTTTCATGTTTAT  300
      |||||||||| |||||||||||||||||||||||||||| ||||||||||
seq2  AAAGAGGTGA-TTGCAGGTATTACTTGATATAAGACAGTCTCATGTTTAT  278

seq1  GTGAAGCCTTGAGTAACAGAAGACAAGACTTAAAGGTGGAAATGTGGGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGCCTTGAGTAACAGAAGACAAGACTTAAAGGTGGAAATGTGGGGT  328

seq1  GATGAAGAGGTTTGTGATGATTAATTTTTTCATGTCAACCAGCATAACCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAGAGGTTTGTGATGATTAATTTTTTCATGTCAACCAGCATAACCC  378

seq1  AGGCCGTGCTCAGAGGCTGGTAAGACATTGTTTCTGTATATACCTGCGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCGTGCTCAGAGGCTGGTAAGACATTGTTTCTGTATATACCTGCGAG  428

seq1  GTTATTTCAACAAATCATTAGTAGTCTGAGGAAAGACAACCTAGCCCCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTTCAACAAATCATTAGTAGTCTGAGGAAAGACAACCTAGCCCCCA  478

seq1  CCAATGAGGGCACCTCACGGGACTGTATAGACTGGCAGAATAGAGGAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGAGGGCACCTCACGGGACTGTATAGACTGGCAGAATAGAGGAAGG  528

seq1  CCACATTAAGTTTCTTCTTGAGCTTGGACAATCTTTGCTCTCAGGCCTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATTAAGTTTCTTCTTGAGCTTGGACAATCTTTGCTCTCAGGCCTTG  578

seq1  GAACTCCAGCTTCTTAGGCATTAGGCTCTGAAACTTACAAGTTCCACAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCCAGCTTCTTAGGCATTAGGCTCTGAAACTTACAAGTTCCACAAG  628

seq1  TTCTGACACTTACAAGTTACAGGTTCCTCTAGTTCCCATGGGCCGAGTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGACACTTACAAGTTACAGGTTCCTCTAGTTCCCATGGGCCGAGTCC  678

seq1  TATAGAAGTTCAGTAGAAGAAGGGCCATAGCAATAATCCAGGTTGGGAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAAGTTCAGTAGAAGAAGGGCCATAGCAATAATCCAGGTTGGGAAG  728

seq1  GAACTGCCTCTAGAAGATGCTTGCAGAGATCAAGAGGAACCTCAGTAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGCCTCTAGAAGATGCTTGCAGAGATCAAGAGGAACCTCAGTAGAG  778

seq1  CAGATAGATTGGGAGACGGGCCATCTGCATCGCACCCATGAAAGCAGTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAGATTGGGAGACGGGCCATCTGCATCGCACCCATGAAAGCAGTCT  828

seq1  GTCAAAATTTGTCTTGAACTTTGTTCACCGAGGTCGAAAATAGGTGGCGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAATTTGTCTTGAACTTTGTTCACCGAGGTCGAAAATAGGTGGCGT  878

seq1  CGTAAGTAACTAAGGGAGATGAGGAAGCTGTGGGGAAGCAGATGGAAGAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAAGTAACTAAGGGAGATGAGGAAGCTGTGGGGAAGCAGATGGAAGAC  928

seq1  CGTGAGGAGTAGTTGGAAAAGATGCAACAGAAGTCCCGAAAAGTTCTAAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGAGGAGTAGTTGGAAAAGATGCAACAGAAGTCCCGAAAAGTTCTAAG  978

seq1  ATTAGAACTGCCAGAGAGTAGTTTGATGGAATGCAGGTTAATGTATGAAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAACTGCCAGAGAGTAGTTTGATGGAATGCAGGTTAATGTATGAAA  1028

seq1  TGCCTGTGTAATAGGACAACCTGGTCAACGTGAACTACATTCCCAGAATT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGTGTAATAGGACAACCTGGTCAACGTGAACTACATTCCCAGAATT  1078

seq1  C  1101
      |
seq2  C  1079

seq1: chr6_133851830_133852521
seq2: B6Ng01-216L12.g_63_754

seq1  GAATTCCCAAGGGGCACATGGAAGCCAGACAGTAGTGGATATGTTCATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAAGGGGCACATGGAAGCCAGACAGTAGTGGATATGTTCATTA  50

seq1  CCTTTATTGCCAGTGGCTTCTCTACATAAAAGTGTCCAAAAAAACTTAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTATTGCCAGTGGCTTCTCTACATAAAAGTGTCCAAAAAAACTTAGT  100

seq1  GTTTTACACCCTTCATATTTATTAATAACTAAACTAGCATGTGAGAGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTACACCCTTCATATTTATTAATAACTAAACTAGCATGTGAGAGTTT  150

seq1  TTAAGCTCCTGATGTTAGCCTAGGGAACACACACACACCTGTTTCGGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCTCCTGATGTTAGCCTAGGGAACACACACACACCTGTTTCGGGGG  200

seq1  GGCATGCAGAAGGAACAACAAATGGTGTTAGAACTCATGGAATGTGGCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGCAGAAGGAACAACAAATGGTGTTAGAACTCATGGAATGTGGCCC  250

seq1  AAGGGTCACTACAGTCACATGGGTGAACCTCAGTGTGGCACAGCCCCGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTCACTACAGTCACATGGGTGAACCTCAGTGTGGCACAGCCCCGAG  300

seq1  GACCATGTGTCCTGAGGACTTCATGCTGTTATGGAGATCTGTTTTGCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATGTGTCCTGAGGACTTCATGCTGTTATGGAGATCTGTTTTGCTTG  350

seq1  CTGTGCTCACGTCCTTCTCAACCTAAAAGTTATATGAAAACTCTAAGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCTCACGTCCTTCTCAACCTAAAAGTTATATGAAAACTCTAAGTGG  400

seq1  GCTTCCAGCCCCTCACTGGACAGCATCTCTGGCACTTACAATGATAGTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCAGCCCCTCACTGGACAGCATCTCTGGCACTTACAATGATAGTGC  450

seq1  TTGATCTCTTTCAGGCATCGTTGCCAGACCAGACTAATGATTCTGTCACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCTCTTTCAGGCATCGTTGCCAGACCAGACTAATGATTCTGTCACC  500

seq1  TGGGAAAGAACATAGAGACATAGATTGTCAGCAACATTTGGAAATGTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAAGAACATAGAGACATAGATTGTCAGCAACATTTGGAAATGTCAG  550

seq1  AAAACATTTGGAAAAATAAAATCATTAGTGAAGCTAGGTTGGGATATTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATTTGGAAAAATAAAATCATTAGTGAAGCTAGGTTGGGATATTTT  600

seq1  TACAGCTAGCTCTGATGTAGAGAATCTTAGGAAACAATTTGAAGTTCGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCTAGCTCTGATGTAGAGAATCTTAGGAAACAATTTGAAGTTCGGA  650

seq1  AAGACACACACTTACTAGTTAAATTAGGGACCTTTTATAGTC  692
      ||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACACACACTTACTAGTTAAATTAGGGACCTTTTATAGTC  692